RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 PACRGQ96M98 296 aaPredicted RBP11.9□□□□□ -0.5
USP40-217ENST00000496298 CARHSP1Q9Y2V2 147 aaKnown RBP11.9□□□□□ -0.5
USP40-217ENST00000496298 UBR4Q5T4S7 5183 aa11.89□□□□□ -0.51
USP40-217ENST00000496298 GAGE2EQ4V326 116 aa11.89□□□□□ -0.51
USP40-217ENST00000496298 Q8IZM0 81 aa11.89□□□□□ -0.51
USP40-217ENST00000496298 SLC7A5P1Q8MH63 180 aa11.89□□□□□ -0.51
USP40-217ENST00000496298 GAGE2DQ9UEU5 116 aa11.89□□□□□ -0.51
USP40-217ENST00000496298 CDKN2A-AS1Q9UH64 79 aa11.89□□□□□ -0.51
USP40-217ENST00000496298 SCGB3A1Q96QR1 104 aa11.88□□□□□ -0.51
USP40-217ENST00000496298 PRSS2P07478 247 aa11.87□□□□□ -0.51
USP40-217ENST00000496298 RHEBQ15382 184 aa11.87□□□□□ -0.51
USP40-217ENST00000496298 C6orf226Q5I0X4 101 aa11.87□□□□□ -0.51
USP40-217ENST00000496298 C1orf137Q5JT78 98 aa11.87□□□□□ -0.51
USP40-217ENST00000496298 KRTAP11-1Q8IUC1 163 aa11.87□□□□□ -0.51
USP40-217ENST00000496298 C9orf129Q5T035 196 aaKnown RBP11.86□□□□□ -0.51
USP40-217ENST00000496298 FAM19A5Q7Z5A7 132 aaPredicted RBP11.86□□□□□ -0.51
USP40-217ENST00000496298 GEMIN7Q9H840 131 aaKnown RBP11.86□□□□□ -0.51
USP40-217ENST00000496298 TOMM7Q9P0U1 55 aa11.86□□□□□ -0.51
USP40-217ENST00000496298 CKS1BP61024 79 aa11.85□□□□□ -0.51
USP40-217ENST00000496298 MRPL18Q9H0U6 180 aaKnown RBP11.85□□□□□ -0.51
USP40-217ENST00000496298 RPS10P5Q9NQ39 176 aa11.84□□□□□ -0.51
USP40-217ENST00000496298 IGLV5-45A0A087WSX0 123 aa11.83□□□□□ -0.52
USP40-217ENST00000496298 TINCRA0A1B0GVN0 87 aa11.83□□□□□ -0.52
USP40-217ENST00000496298 IGLV7-43P04211 117 aa11.83□□□□□ -0.52
USP40-217ENST00000496298 FABP9Q0Z7S8 132 aa11.83□□□□□ -0.52
USP40-217ENST00000496298 CST9LQ9H4G1 147 aa11.83□□□□□ -0.52
USP40-217ENST00000496298 F8VRH5 84 aa11.82□□□□□ -0.52
USP40-217ENST00000496298 ODF1Q14990 250 aa11.82□□□□□ -0.52
USP40-217ENST00000496298 SMIM1B2RUZ4 78 aa11.81□□□□□ -0.52
USP40-217ENST00000496298 M0QXV9 152 aa11.81□□□□□ -0.52
USP40-217ENST00000496298 FA2HQ7L5A8 372 aa11.81□□□□□ -0.52
USP40-217ENST00000496298 CXCL5P42830 114 aa11.8□□□□□ -0.52
USP40-217ENST00000496298 PDZD11Q5EBL8 140 aa11.8□□□□□ -0.52
USP40-217ENST00000496298 LINC00469Q8N7U9 141 aa11.8□□□□□ -0.52
USP40-217ENST00000496298 PMVKQ15126 192 aa11.79□□□□□ -0.52
USP40-217ENST00000496298 DIRC1Q969H9 104 aa11.79□□□□□ -0.52
USP40-217ENST00000496298 SMCO4Q9NRQ5 59 aa11.79□□□□□ -0.52
USP40-217ENST00000496298 A0A096LNJ9 63 aa11.76□□□□□ -0.53
USP40-217ENST00000496298 H0Y9J4 135 aa11.76□□□□□ -0.53
USP40-217ENST00000496298 UBE2BP63146 152 aa11.76□□□□□ -0.53
USP40-217ENST00000496298 COX7B2Q8TF08 81 aa11.76□□□□□ -0.53
USP40-217ENST00000496298 URB1-AS1Q96HZ7 61 aa11.76□□□□□ -0.53
USP40-217ENST00000496298 C18orf32Q8TCD1 76 aa11.75□□□□□ -0.53
USP40-217ENST00000496298 XAGE1AQ9HD64 81 aa11.75□□□□□ -0.53
USP40-217ENST00000496298 TRAPPC1Q9Y5R8 145 aa11.75□□□□□ -0.53
USP40-217ENST00000496298 LINC00614P0C842 121 aa11.74□□□□□ -0.53
USP40-217ENST00000496298 C22orf24Q9Y442 160 aa11.74□□□□□ -0.53
USP40-217ENST00000496298 APOC3P02656 99 aa11.73□□□□□ -0.53
USP40-217ENST00000496298 TP73-AS1Q9UF72 201 aa11.73□□□□□ -0.53
USP40-217ENST00000496298 SPINK8P0C7L1 97 aa11.72□□□□□ -0.53
USP40-217ENST00000496298 IGLC3P0DOY3 106 aa11.72□□□□□ -0.53
USP40-217ENST00000496298 SNAPINO95295 136 aa11.71□□□□□ -0.53
USP40-217ENST00000496298 LBHQ53QV2 105 aaPredicted RBP11.71□□□□□ -0.53
USP40-217ENST00000496298 SVBPQ8N300 66 aa11.71□□□□□ -0.53
USP40-217ENST00000496298 IGLV5-39A0A0G2JS06 123 aa11.7□□□□□ -0.54
USP40-217ENST00000496298 H3BRM9 83 aa11.7□□□□□ -0.54
USP40-217ENST00000496298 LRP2P98164 4655 aa11.7□□□□□ -0.54
USP40-217ENST00000496298 LCE2BO14633 110 aa11.69□□□□□ -0.54
USP40-217ENST00000496298 HBDP02042 147 aa11.69□□□□□ -0.54
USP40-217ENST00000496298 KRTAP1-4P0C5Y4 121 aa11.69□□□□□ -0.54
USP40-217ENST00000496298 NUPR1O60356 82 aa11.68□□□□□ -0.54
USP40-217ENST00000496298 PRR26Q8N8Z3 221 aa11.68□□□□□ -0.54
USP40-217ENST00000496298 YPEL4Q96NS1 127 aa11.68□□□□□ -0.54
USP40-217ENST00000496298 RAB5BP61020 215 aa11.67□□□□□ -0.54
USP40-217ENST00000496298 MRPL55Q7Z7F7 128 aaKnown RBP11.67□□□□□ -0.54
USP40-217ENST00000496298 IGLV1-50A0A075B6I6 118 aa11.66□□□□□ -0.54
USP40-217ENST00000496298 ZNF861PO60384 105 aa11.66□□□□□ -0.54
USP40-217ENST00000496298 ZNF22P17026 224 aaPredicted RBP11.66□□□□□ -0.54
USP40-217ENST00000496298 IGLV5-37A0A075B6J1 123 aa11.65□□□□□ -0.54
USP40-217ENST00000496298 ATP5LO75964 103 aa11.65□□□□□ -0.54
USP40-217ENST00000496298 NDUFA6P56556 154 aa11.65□□□□□ -0.54
USP40-217ENST00000496298 PMCHL1Q16048 86 aa11.65□□□□□ -0.54
USP40-217ENST00000496298 SMCPP49901 116 aaPredicted RBP11.64□□□□□ -0.55
USP40-217ENST00000496298 LINC00167Q96N53 147 aa11.63□□□□□ -0.55
USP40-217ENST00000496298 C11orf86A6NJI1 115 aa11.61□□□□□ -0.55
USP40-217ENST00000496298 BAGE3Q86Y29 109 aa11.61□□□□□ -0.55
USP40-217ENST00000496298 BCE1O60756 84 aa11.6□□□□□ -0.55
USP40-217ENST00000496298 CHCHD1Q96BP2 118 aaKnown RBP11.59□□□□□ -0.55
USP40-217ENST00000496298 RPL13AP40429 203 aaKnown RBP11.58□□□□□ -0.56
USP40-217ENST00000496298 COX17Q14061 63 aa11.58□□□□□ -0.56
USP40-217ENST00000496298 RNF213Q63HN8 5207 aa11.58□□□□□ -0.56
USP40-217ENST00000496298 RPL37AP8A6NKH3 93 aa11.57□□□□□ -0.56
USP40-217ENST00000496298 PFN2P35080 140 aa11.57□□□□□ -0.56
USP40-217ENST00000496298 RPL28P46779 137 aaKnown RBP11.57□□□□□ -0.56
USP40-217ENST00000496298 SFTA2Q6UW10 78 aa11.57□□□□□ -0.56
USP40-217ENST00000496298 ERG28Q9UKR5 140 aa11.57□□□□□ -0.56
USP40-217ENST00000496298 TMEM170BQ5T4T1 132 aa11.56□□□□□ -0.56
USP40-217ENST00000496298 NKAPP1Q8N9T2 125 aa11.56□□□□□ -0.56
USP40-217ENST00000496298 CHTOPQ9Y3Y2 248 aaKnown RBP11.56□□□□□ -0.56
USP40-217ENST00000496298 TRAV12-1A0A0B4J245 112 aa11.55□□□□□ -0.56
USP40-217ENST00000496298 GAGE10A6NGK3 116 aa11.55□□□□□ -0.56
USP40-217ENST00000496298 ZNF625Q96I27 306 aaPredicted RBP11.55□□□□□ -0.56
USP40-217ENST00000496298 SND1-IT1Q9HBX3 110 aa11.55□□□□□ -0.56
USP40-217ENST00000496298 KRTAP13-1Q8IUC0 172 aa11.54□□□□□ -0.56
USP40-217ENST00000496298 VPREB1P12018 145 aa11.53□□□□□ -0.56
USP40-217ENST00000496298 IFI27L1Q96BM0 104 aa11.53□□□□□ -0.56
USP40-217ENST00000496298 CBLN2Q8IUK8 224 aa11.52□□□□□ -0.57
USP40-217ENST00000496298 TMEM223A0PJW6 202 aa11.51□□□□□ -0.57
USP40-217ENST00000496298 SCO1O75880 301 aa11.5□□□□□ -0.57
USP40-217ENST00000496298 RPL24P83731 157 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms