RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 SCGB3A1Q96QR1 104 aa7.8□□□□□ -1.16
PTPRF-214ENST00000496043 ALKBH7Q9BT30 221 aaPredicted RBP7.8□□□□□ -1.16
PTPRF-214ENST00000496043 GNB1LQ9BYB4 327 aa7.8□□□□□ -1.16
PTPRF-214ENST00000496043 GEMIN7Q9H840 131 aaKnown RBP7.8□□□□□ -1.16
PTPRF-214ENST00000496043 ERASQ7Z444 233 aa7.79□□□□□ -1.16
PTPRF-214ENST00000496043 Q8IZM0 81 aa7.79□□□□□ -1.16
PTPRF-214ENST00000496043 DIRC1Q969H9 104 aa7.79□□□□□ -1.16
PTPRF-214ENST00000496043 UBR4Q5T4S7 5183 aa7.78□□□□□ -1.16
PTPRF-214ENST00000496043 LINC01549A6NIU2 74 aa7.78□□□□□ -1.16
PTPRF-214ENST00000496043 UBE2BP63146 152 aa7.78□□□□□ -1.16
PTPRF-214ENST00000496043 COX19Q49B96 90 aa7.78□□□□□ -1.16
PTPRF-214ENST00000496043 CDKN2A-AS1Q9UH64 79 aa7.78□□□□□ -1.16
PTPRF-214ENST00000496043 M0QXV9 152 aa7.77□□□□□ -1.17
PTPRF-214ENST00000496043 ODF1Q14990 250 aa7.77□□□□□ -1.17
PTPRF-214ENST00000496043 C9orf129Q5T035 196 aaKnown RBP7.77□□□□□ -1.17
PTPRF-214ENST00000496043 KRTAP11-1Q8IUC1 163 aa7.77□□□□□ -1.17
PTPRF-214ENST00000496043 KRTAP7-1Q8IUC3 87 aa7.77□□□□□ -1.17
PTPRF-214ENST00000496043 RHEBQ15382 184 aa7.76□□□□□ -1.17
PTPRF-214ENST00000496043 SVBPQ8N300 66 aa7.76□□□□□ -1.17
PTPRF-214ENST00000496043 RPS10P5Q9NQ39 176 aa7.76□□□□□ -1.17
PTPRF-214ENST00000496043 TINCRA0A1B0GVN0 87 aa7.75□□□□□ -1.17
PTPRF-214ENST00000496043 LINC01546A6NGU7 62 aa7.75□□□□□ -1.17
PTPRF-214ENST00000496043 F8VRH5 84 aa7.75□□□□□ -1.17
PTPRF-214ENST00000496043 SNAPINO95295 136 aa7.75□□□□□ -1.17
PTPRF-214ENST00000496043 FABP9Q0Z7S8 132 aa7.75□□□□□ -1.17
PTPRF-214ENST00000496043 LINC00469Q8N7U9 141 aa7.75□□□□□ -1.17
PTPRF-214ENST00000496043 H0Y9J4 135 aa7.74□□□□□ -1.17
PTPRF-214ENST00000496043 CXCL5P42830 114 aa7.74□□□□□ -1.17
PTPRF-214ENST00000496043 LBHQ53QV2 105 aaPredicted RBP7.74□□□□□ -1.17
PTPRF-214ENST00000496043 PDZD11Q5EBL8 140 aa7.74□□□□□ -1.17
PTPRF-214ENST00000496043 FA2HQ7L5A8 372 aa7.74□□□□□ -1.17
PTPRF-214ENST00000496043 CST9LQ9H4G1 147 aa7.74□□□□□ -1.17
PTPRF-214ENST00000496043 ATP6V1G1O75348 118 aa7.73□□□□□ -1.17
PTPRF-214ENST00000496043 MRPL18Q9H0U6 180 aaKnown RBP7.73□□□□□ -1.17
PTPRF-214ENST00000496043 SMCO4Q9NRQ5 59 aa7.73□□□□□ -1.17
PTPRF-214ENST00000496043 C22orf24Q9Y442 160 aa7.73□□□□□ -1.17
PTPRF-214ENST00000496043 PRR26Q8N8Z3 221 aa7.72□□□□□ -1.17
PTPRF-214ENST00000496043 COX7B2Q8TF08 81 aa7.72□□□□□ -1.17
PTPRF-214ENST00000496043 XAGE1AQ9HD64 81 aa7.72□□□□□ -1.17
PTPRF-214ENST00000496043 IGLV5-45A0A087WSX0 123 aa7.71□□□□□ -1.18
PTPRF-214ENST00000496043 SMIM1B2RUZ4 78 aa7.71□□□□□ -1.18
PTPRF-214ENST00000496043 PMVKQ15126 192 aa7.71□□□□□ -1.18
PTPRF-214ENST00000496043 CBLN2Q8IUK8 224 aa7.71□□□□□ -1.18
PTPRF-214ENST00000496043 YPEL4Q96NS1 127 aa7.7□□□□□ -1.18
PTPRF-214ENST00000496043 IGLV1-50A0A075B6I6 118 aa7.69□□□□□ -1.18
PTPRF-214ENST00000496043 H3BRM9 83 aa7.69□□□□□ -1.18
PTPRF-214ENST00000496043 NUPR1O60356 82 aa7.69□□□□□ -1.18
PTPRF-214ENST00000496043 SCO1O75880 301 aa7.69□□□□□ -1.18
PTPRF-214ENST00000496043 TP73-AS1Q9UF72 201 aa7.69□□□□□ -1.18
PTPRF-214ENST00000496043 ZNF861PO60384 105 aa7.68□□□□□ -1.18
PTPRF-214ENST00000496043 SPINK8P0C7L1 97 aa7.68□□□□□ -1.18
PTPRF-214ENST00000496043 TRAPPC1Q9Y5R8 145 aa7.68□□□□□ -1.18
PTPRF-214ENST00000496043 LINC00614P0C842 121 aa7.67□□□□□ -1.18
PTPRF-214ENST00000496043 NDUFA6P56556 154 aa7.67□□□□□ -1.18
PTPRF-214ENST00000496043 RAB5BP61020 215 aa7.67□□□□□ -1.18
PTPRF-214ENST00000496043 MRPL55Q7Z7F7 128 aaKnown RBP7.67□□□□□ -1.18
PTPRF-214ENST00000496043 KRTAP1-4P0C5Y4 121 aa7.66□□□□□ -1.18
PTPRF-214ENST00000496043 ATP5LO75964 103 aa7.65□□□□□ -1.18
PTPRF-214ENST00000496043 S100A1P23297 94 aa7.65□□□□□ -1.18
PTPRF-214ENST00000496043 RPL13AP40429 203 aaKnown RBP7.65□□□□□ -1.18
PTPRF-214ENST00000496043 LINC00167Q96N53 147 aa7.65□□□□□ -1.18
PTPRF-214ENST00000496043 LRP2P98164 4655 aa7.65□□□□□ -1.19
PTPRF-214ENST00000496043 IGLC3P0DOY3 106 aa7.64□□□□□ -1.19
PTPRF-214ENST00000496043 RPL28P46779 137 aaKnown RBP7.64□□□□□ -1.19
PTPRF-214ENST00000496043 C18orf32Q8TCD1 76 aa7.64□□□□□ -1.19
PTPRF-214ENST00000496043 A0A096LNJ9 63 aa7.63□□□□□ -1.19
PTPRF-214ENST00000496043 RPL37AP8A6NKH3 93 aa7.63□□□□□ -1.19
PTPRF-214ENST00000496043 BCE1O60756 84 aa7.63□□□□□ -1.19
PTPRF-214ENST00000496043 HBDP02042 147 aa7.63□□□□□ -1.19
PTPRF-214ENST00000496043 URB1-AS1Q96HZ7 61 aa7.63□□□□□ -1.19
PTPRF-214ENST00000496043 IGLV5-37A0A075B6J1 123 aa7.62□□□□□ -1.19
PTPRF-214ENST00000496043 IGLV5-39A0A0G2JS06 123 aa7.62□□□□□ -1.19
PTPRF-214ENST00000496043 NKAPP1Q8N9T2 125 aa7.62□□□□□ -1.19
PTPRF-214ENST00000496043 GAGE10A6NGK3 116 aa7.61□□□□□ -1.19
PTPRF-214ENST00000496043 COLCA2A8K830 154 aa7.61□□□□□ -1.19
PTPRF-214ENST00000496043 ZNF22P17026 224 aaPredicted RBP7.61□□□□□ -1.19
PTPRF-214ENST00000496043 PFN2P35080 140 aa7.61□□□□□ -1.19
PTPRF-214ENST00000496043 PMCHL1Q16048 86 aa7.61□□□□□ -1.19
PTPRF-214ENST00000496043 BAGE3Q86Y29 109 aa7.61□□□□□ -1.19
PTPRF-214ENST00000496043 COX17Q14061 63 aa7.59□□□□□ -1.19
PTPRF-214ENST00000496043 TMEM170BQ5T4T1 132 aa7.59□□□□□ -1.19
PTPRF-214ENST00000496043 ERG28Q9UKR5 140 aa7.58□□□□□ -1.2
PTPRF-214ENST00000496043 C11orf86A6NJI1 115 aa7.57□□□□□ -1.2
PTPRF-214ENST00000496043 UBE2AP49459 152 aa7.57□□□□□ -1.2
PTPRF-214ENST00000496043 RPL24P83731 157 aaKnown RBP7.57□□□□□ -1.2
PTPRF-214ENST00000496043 SFTA2Q6UW10 78 aa7.57□□□□□ -1.2
PTPRF-214ENST00000496043 ZNF625Q96I27 306 aaPredicted RBP7.57□□□□□ -1.2
PTPRF-214ENST00000496043 SND1-IT1Q9HBX3 110 aa7.57□□□□□ -1.2
PTPRF-214ENST00000496043 CHTOPQ9Y3Y2 248 aaKnown RBP7.57□□□□□ -1.2
PTPRF-214ENST00000496043 CRYGAP11844 174 aa7.56□□□□□ -1.2
PTPRF-214ENST00000496043 CHCHD1Q96BP2 118 aaKnown RBP7.56□□□□□ -1.2
PTPRF-214ENST00000496043 IGKV2-28A0A075B6P5 120 aa7.55□□□□□ -1.2
PTPRF-214ENST00000496043 IGKV2D-28P01615 120 aa7.55□□□□□ -1.2
PTPRF-214ENST00000496043 TRGC2P03986 189 aa7.54□□□□□ -1.2
PTPRF-214ENST00000496043 VPREB1P12018 145 aa7.54□□□□□ -1.2
PTPRF-214ENST00000496043 LINC00158P58513 81 aa7.54□□□□□ -1.2
PTPRF-214ENST00000496043 PRR4Q16378 134 aa7.54□□□□□ -1.2
PTPRF-214ENST00000496043 TYMSOSQ8TAI1 123 aa7.54□□□□□ -1.2
PTPRF-214ENST00000496043 IFI27L1Q96BM0 104 aa7.54□□□□□ -1.2
PTPRF-214ENST00000496043 RNF213Q63HN8 5207 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 79.6 ms