RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 C2orf88Q9BSF0 95 aa8.08□□□□□ -1.12
PRPF40A-211ENST00000493468 EIF5A2Q9GZV4 153 aaKnown RBP8.08□□□□□ -1.12
PRPF40A-211ENST00000493468 D6R8Y8 96 aa8.07□□□□□ -1.12
PRPF40A-211ENST00000493468 CEBPGP53567 150 aa8.07□□□□□ -1.12
PRPF40A-211ENST00000493468 PNRC1Q12796 327 aaPredicted RBP8.07□□□□□ -1.12
PRPF40A-211ENST00000493468 SLC51BQ86UW2 128 aa8.07□□□□□ -1.12
PRPF40A-211ENST00000493468 ALKBH7Q9BT30 221 aaPredicted RBP8.07□□□□□ -1.12
PRPF40A-211ENST00000493468 NPYP01303 97 aa8.06□□□□□ -1.12
PRPF40A-211ENST00000493468 CXCL5P42830 114 aa8.06□□□□□ -1.12
PRPF40A-211ENST00000493468 FAM74A3Q4VXF1 159 aa8.06□□□□□ -1.12
PRPF40A-211ENST00000493468 FAM19A3Q7Z5A8 133 aa8.06□□□□□ -1.12
PRPF40A-211ENST00000493468 GAGE10A6NGK3 116 aa8.05□□□□□ -1.12
PRPF40A-211ENST00000493468 PPBPP02775 128 aa8.05□□□□□ -1.12
PRPF40A-211ENST00000493468 RAB5AP20339 215 aa8.05□□□□□ -1.12
PRPF40A-211ENST00000493468 AMELXQ99217 191 aa8.05□□□□□ -1.12
PRPF40A-211ENST00000493468 LCE2CQ5TA81 110 aa8.04□□□□□ -1.12
PRPF40A-211ENST00000493468 SMIM27A0A1W2PRY6 76 aa8.03□□□□□ -1.12
PRPF40A-211ENST00000493468 NPSP0C0P6 89 aa8.03□□□□□ -1.12
PRPF40A-211ENST00000493468 C3orf22Q8N5N4 141 aa8.03□□□□□ -1.12
PRPF40A-211ENST00000493468 NKAPP1Q8N9T2 125 aa8.03□□□□□ -1.12
PRPF40A-211ENST00000493468 BATF3Q9NR55 127 aa8.03□□□□□ -1.12
PRPF40A-211ENST00000493468 F8W036 122 aa8.02□□□□□ -1.13
PRPF40A-211ENST00000493468 S100A8P05109 93 aa8.02□□□□□ -1.13
PRPF40A-211ENST00000493468 CFC1BP0CG36 223 aa8.02□□□□□ -1.13
PRPF40A-211ENST00000493468 BLOC1S1P78537 153 aa8.02□□□□□ -1.13
PRPF40A-211ENST00000493468 HERVK_113P63121 156 aa8.01□□□□□ -1.13
PRPF40A-211ENST00000493468 SEC11AP67812 179 aa8.01□□□□□ -1.13
PRPF40A-211ENST00000493468 PRLHP81277 87 aa8.01□□□□□ -1.13
PRPF40A-211ENST00000493468 C2orf66Q6UXQ4 117 aa8.01□□□□□ -1.13
PRPF40A-211ENST00000493468 VCX2Q9H322 139 aa8.01□□□□□ -1.13
PRPF40A-211ENST00000493468 IGKV2-28A0A075B6P5 120 aa8□□□□□ -1.13
PRPF40A-211ENST00000493468 IGKV2D-28P01615 120 aa8□□□□□ -1.13
PRPF40A-211ENST00000493468 ZC2HC1BQ5TFG8 222 aa8□□□□□ -1.13
PRPF40A-211ENST00000493468 ORMDL3Q8N138 153 aa8□□□□□ -1.13
PRPF40A-211ENST00000493468 PLEKHB2Q96CS7 222 aa8□□□□□ -1.13
PRPF40A-211ENST00000493468 CDKN2A-AS1Q9UH64 79 aa8□□□□□ -1.13
PRPF40A-211ENST00000493468 CYSLTR1Q9Y271 337 aa8□□□□□ -1.13
PRPF40A-211ENST00000493468 A0A1B0GXF2 115 aa7.99□□□□□ -1.13
PRPF40A-211ENST00000493468 PRSS47A8MTI9 375 aa7.99□□□□□ -1.13
PRPF40A-211ENST00000493468 GNB1LQ9BYB4 327 aa7.99□□□□□ -1.13
PRPF40A-211ENST00000493468 LCE2BO14633 110 aa7.98□□□□□ -1.13
PRPF40A-211ENST00000493468 MT1HP80294 61 aa7.98□□□□□ -1.13
PRPF40A-211ENST00000493468 C4orf48Q5BLP8 95 aa7.98□□□□□ -1.13
PRPF40A-211ENST00000493468 FAM19A1Q7Z5A9 133 aa7.98□□□□□ -1.13
PRPF40A-211ENST00000493468 TMEM126AQ9H061 195 aa7.98□□□□□ -1.13
PRPF40A-211ENST00000493468 A0A1B0GVG6 124 aa7.97□□□□□ -1.13
PRPF40A-211ENST00000493468 SRP19P09132 144 aaKnown RBP7.97□□□□□ -1.13
PRPF40A-211ENST00000493468 RPL23P62829 140 aaKnown RBP7.97□□□□□ -1.13
PRPF40A-211ENST00000493468 KRTAP19-2Q3LHN2 52 aa7.97□□□□□ -1.13
PRPF40A-211ENST00000493468 PRELID3AQ96N28 172 aa7.97□□□□□ -1.13
PRPF40A-211ENST00000493468 IGIPA6NJ69 53 aa7.96□□□□□ -1.14
PRPF40A-211ENST00000493468 MRPL54Q6P161 138 aaKnown RBP7.96□□□□□ -1.14
PRPF40A-211ENST00000493468 TMEM136Q6ZRR5 245 aa7.96□□□□□ -1.14
PRPF40A-211ENST00000493468 GEMIN7Q9H840 131 aaKnown RBP7.96□□□□□ -1.14
PRPF40A-211ENST00000493468 LAMTOR2Q9Y2Q5 125 aa7.96□□□□□ -1.14
PRPF40A-211ENST00000493468 SMIM1B2RUZ4 78 aa7.95□□□□□ -1.14
PRPF40A-211ENST00000493468 SPINK1P00995 79 aa7.95□□□□□ -1.14
PRPF40A-211ENST00000493468 PAPPA-AS1Q5QFB9 102 aa7.95□□□□□ -1.14
PRPF40A-211ENST00000493468 XP32Q5T750 250 aa7.95□□□□□ -1.14
PRPF40A-211ENST00000493468 CBLN2Q8IUK8 224 aa7.95□□□□□ -1.14
PRPF40A-211ENST00000493468 TMEM238C9JI98 176 aa7.94□□□□□ -1.14
PRPF40A-211ENST00000493468 M0R378 163 aa7.94□□□□□ -1.14
PRPF40A-211ENST00000493468 SCO1O75880 301 aa7.94□□□□□ -1.14
PRPF40A-211ENST00000493468 LORP23490 312 aaPredicted RBP7.94□□□□□ -1.14
PRPF40A-211ENST00000493468 PDZD11Q5EBL8 140 aa7.94□□□□□ -1.14
PRPF40A-211ENST00000493468 TCTE3Q8IZS6 198 aa7.94□□□□□ -1.14
PRPF40A-211ENST00000493468 DAND5Q8N907 189 aa7.94□□□□□ -1.14
PRPF40A-211ENST00000493468 COX7B2Q8TF08 81 aa7.94□□□□□ -1.14
PRPF40A-211ENST00000493468 SPRR4Q96PI1 79 aa7.94□□□□□ -1.14
PRPF40A-211ENST00000493468 K7EMI3 77 aa7.93□□□□□ -1.14
PRPF40A-211ENST00000493468 ADIRFQ15847 76 aa7.93□□□□□ -1.14
PRPF40A-211ENST00000493468 ORMDL2Q53FV1 153 aa7.93□□□□□ -1.14
PRPF40A-211ENST00000493468 ALKAL2Q6UX46 152 aa7.93□□□□□ -1.14
PRPF40A-211ENST00000493468 Q8N8P6 123 aa7.93□□□□□ -1.14
PRPF40A-211ENST00000493468 Q8NBF4 154 aa7.93□□□□□ -1.14
PRPF40A-211ENST00000493468 MAP1LC3AQ9H492 121 aa7.93□□□□□ -1.14
PRPF40A-211ENST00000493468 NDUFA12Q9UI09 145 aa7.93□□□□□ -1.14
PRPF40A-211ENST00000493468 VPREB1P12018 145 aa7.92□□□□□ -1.14
PRPF40A-211ENST00000493468 ATP5L2Q7Z4Y8 100 aa7.92□□□□□ -1.14
PRPF40A-211ENST00000493468 FAM19A2Q8N3H0 131 aa7.92□□□□□ -1.14
PRPF40A-211ENST00000493468 LOC389332A0A1B0GUA5 103 aa7.91□□□□□ -1.14
PRPF40A-211ENST00000493468 RAB5BP61020 215 aa7.91□□□□□ -1.14
PRPF40A-211ENST00000493468 RPS29P62273 56 aaKnown RBP7.91□□□□□ -1.14
PRPF40A-211ENST00000493468 TIMM17AQ99595 171 aa7.91□□□□□ -1.14
PRPF40A-211ENST00000493468 HIGD2AQ9BW72 106 aa7.91□□□□□ -1.14
PRPF40A-211ENST00000493468 NAT8Q9UHE5 227 aa7.91□□□□□ -1.14
PRPF40A-211ENST00000493468 ZNF706Q9Y5V0 76 aaPredicted RBP7.91□□□□□ -1.14
PRPF40A-211ENST00000493468 IGLV5-45A0A087WSX0 123 aa7.9□□□□□ -1.14
PRPF40A-211ENST00000493468 KRTAP10-6P60371 365 aaPredicted RBP7.9□□□□□ -1.14
PRPF40A-211ENST00000493468 TINCRA0A1B0GVN0 87 aa7.88□□□□□ -1.15
PRPF40A-211ENST00000493468 KRTAP9-7A8MTY7 169 aa7.88□□□□□ -1.15
PRPF40A-211ENST00000493468 RPL24P83731 157 aaKnown RBP7.88□□□□□ -1.15
PRPF40A-211ENST00000493468 ATP5LO75964 103 aa7.87□□□□□ -1.15
PRPF40A-211ENST00000493468 G0S2P27469 103 aa7.87□□□□□ -1.15
PRPF40A-211ENST00000493468 Q8N377 158 aa7.87□□□□□ -1.15
PRPF40A-211ENST00000493468 TOMM6Q96B49 74 aa7.85□□□□□ -1.15
PRPF40A-211ENST00000493468 SND1-IT1Q9HBX3 110 aa7.85□□□□□ -1.15
PRPF40A-211ENST00000493468 NXT2Q9NPJ8 142 aaKnown RBP7.85□□□□□ -1.15
PRPF40A-211ENST00000493468 SLC25A20O43772 301 aa7.84□□□□□ -1.15
PRPF40A-211ENST00000493468 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 122.7 ms