RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 GCSHP23434 173 aa10.21□□□□□ -0.77
HPS4-216ENST00000493455 STPG4Q8N801 248 aa10.21□□□□□ -0.77
HPS4-216ENST00000493455 PKD1P98161 4303 aa10.2□□□□□ -0.78
HPS4-216ENST00000493455 LEPROTO15243 131 aa10.19□□□□□ -0.78
HPS4-216ENST00000493455 CXCL5P42830 114 aa10.19□□□□□ -0.78
HPS4-216ENST00000493455 AKR1D1P51857 326 aa10.19□□□□□ -0.78
HPS4-216ENST00000493455 C9orf163Q8N9P6 203 aa10.19□□□□□ -0.78
HPS4-216ENST00000493455 ZNF625Q96I27 306 aaPredicted RBP10.19□□□□□ -0.78
HPS4-216ENST00000493455 C6orf48Q9UBA6 75 aa10.19□□□□□ -0.78
HPS4-216ENST00000493455 LGALS3P17931 250 aaKnown RBP10.18□□□□□ -0.78
HPS4-216ENST00000493455 C9orf116Q5BN46 136 aaPredicted RBP10.18□□□□□ -0.78
HPS4-216ENST00000493455 PLEKHB2Q96CS7 222 aa10.18□□□□□ -0.78
HPS4-216ENST00000493455 F8WDY8 70 aa10.17□□□□□ -0.78
HPS4-216ENST00000493455 TSPEAR-AS2P59090 65 aa10.17□□□□□ -0.78
HPS4-216ENST00000493455 KRTAP10-1P60331 282 aa10.17□□□□□ -0.78
HPS4-216ENST00000493455 RPL18AQ02543 176 aaKnown RBP10.17□□□□□ -0.78
HPS4-216ENST00000493455 J3QQQ9 107 aa10.16□□□□□ -0.78
HPS4-216ENST00000493455 MAJINQ3KP22 176 aa10.16□□□□□ -0.78
HPS4-216ENST00000493455 IGKV2-24A0A0C4DH68 120 aa10.15□□□□□ -0.78
HPS4-216ENST00000493455 TRBV30A0A0K0K1B3 111 aa10.15□□□□□ -0.78
HPS4-216ENST00000493455 HSBP1L1C9JCN9 74 aa10.15□□□□□ -0.78
HPS4-216ENST00000493455 E9PLD3 99 aa10.15□□□□□ -0.78
HPS4-216ENST00000493455 GAGE2BQ13066 116 aa10.15□□□□□ -0.78
HPS4-216ENST00000493455 ANKRD39Q53RE8 183 aa10.15□□□□□ -0.78
HPS4-216ENST00000493455 NDUFA12Q9UI09 145 aa10.15□□□□□ -0.78
HPS4-216ENST00000493455 LOC107984640A0A0U1RRK4 108 aa10.14□□□□□ -0.79
HPS4-216ENST00000493455 NMUP48645 174 aa10.14□□□□□ -0.79
HPS4-216ENST00000493455 HECTD4Q9Y4D8 3996 aa10.14□□□□□ -0.79
HPS4-216ENST00000493455 IGKV2D-26A0A0A0MRZ7 120 aa10.13□□□□□ -0.79
HPS4-216ENST00000493455 CHTF8P0CG12 524 aa10.13□□□□□ -0.79
HPS4-216ENST00000493455 PFN2P35080 140 aa10.13□□□□□ -0.79
HPS4-216ENST00000493455 GAGE2EQ4V326 116 aa10.13□□□□□ -0.79
HPS4-216ENST00000493455 GAGE2DQ9UEU5 116 aa10.13□□□□□ -0.79
HPS4-216ENST00000493455 A0A096LNI7 61 aa10.12□□□□□ -0.79
HPS4-216ENST00000493455 A0A0U1RRA0 63 aa10.12□□□□□ -0.79
HPS4-216ENST00000493455 MYMXA0A1B0GTQ4 84 aa10.12□□□□□ -0.79
HPS4-216ENST00000493455 HAMPP81172 84 aa10.12□□□□□ -0.79
HPS4-216ENST00000493455 JOSD1Q15040 202 aaPredicted RBP10.12□□□□□ -0.79
HPS4-216ENST00000493455 RNF151Q2KHN1 245 aa10.12□□□□□ -0.79
HPS4-216ENST00000493455 MEIG1Q5JSS6 88 aa10.12□□□□□ -0.79
HPS4-216ENST00000493455 SDIM1Q6ZPB5 146 aa10.12□□□□□ -0.79
HPS4-216ENST00000493455 DPH3Q96FX2 82 aa10.12□□□□□ -0.79
HPS4-216ENST00000493455 TTTY13Q9BZ97 58 aa10.12□□□□□ -0.79
HPS4-216ENST00000493455 EPPK1P58107 5090 aaKnown RBP10.11□□□□□ -0.79
HPS4-216ENST00000493455 DNAH5Q8TE73 4624 aa10.11□□□□□ -0.79
HPS4-216ENST00000493455 ERG28Q9UKR5 140 aa10.1□□□□□ -0.79
HPS4-216ENST00000493455 PKIGQ9Y2B9 76 aa10.1□□□□□ -0.79
HPS4-216ENST00000493455 ZNF815PA8K554 130 aa10.09□□□□□ -0.79
HPS4-216ENST00000493455 LINC00158P58513 81 aa10.09□□□□□ -0.79
HPS4-216ENST00000493455 PYY3Q5JQD4 70 aa10.09□□□□□ -0.79
HPS4-216ENST00000493455 SFTA2Q6UW10 78 aa10.09□□□□□ -0.79
HPS4-216ENST00000493455 FAM30AQ9NZY2 134 aa10.09□□□□□ -0.79
HPS4-216ENST00000493455 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.09□□□□□ -0.79
HPS4-216ENST00000493455 NDUFC2-KCTD14E9PQ53 114 aa10.08□□□□□ -0.8
HPS4-216ENST00000493455 PANO1I0J062 215 aa10.08□□□□□ -0.8
HPS4-216ENST00000493455 PTTG1IPP53801 180 aa10.08□□□□□ -0.8
HPS4-216ENST00000493455 HERV-K104P63124 156 aa10.08□□□□□ -0.8
HPS4-216ENST00000493455 Q6ZRP5 223 aa10.08□□□□□ -0.8
HPS4-216ENST00000493455 SMIM13P0DJ93 91 aa10.07□□□□□ -0.8
HPS4-216ENST00000493455 VAMP8Q9BV40 100 aa10.07□□□□□ -0.8
HPS4-216ENST00000493455 PAM16Q9Y3D7 125 aa10.07□□□□□ -0.8
HPS4-216ENST00000493455 DYNC1H1Q14204 4646 aaKnown RBP10.07□□□□□ -0.8
HPS4-216ENST00000493455 PCP2Q8IVA1 136 aa10.06□□□□□ -0.8
HPS4-216ENST00000493455 XAGE1AQ9HD64 81 aa10.06□□□□□ -0.8
HPS4-216ENST00000493455 PKHD1P08F94 4074 aa10.05□□□□□ -0.8
HPS4-216ENST00000493455 TLX1NBP0CAT3 122 aa10.05□□□□□ -0.8
HPS4-216ENST00000493455 SPATA45Q537H7 98 aa10.05□□□□□ -0.8
HPS4-216ENST00000493455 A0A0J9YXY3 114 aa10.04□□□□□ -0.8
HPS4-216ENST00000493455 SCGB1D4Q6XE38 83 aa10.04□□□□□ -0.8
HPS4-216ENST00000493455 SPACA4Q8TDM5 124 aa10.04□□□□□ -0.8
HPS4-216ENST00000493455 DAND5Q8N907 189 aa10.03□□□□□ -0.8
HPS4-216ENST00000493455 COX17Q14061 63 aa10.02□□□□□ -0.81
HPS4-216ENST00000493455 C9orf129Q5T035 196 aaKnown RBP10.02□□□□□ -0.81
HPS4-216ENST00000493455 SCXQ7RTU7 201 aa10.02□□□□□ -0.81
HPS4-216ENST00000493455 FAM19A5Q7Z5A7 132 aaPredicted RBP10.02□□□□□ -0.81
HPS4-216ENST00000493455 MIR7-3HGQ8N6C7 128 aa10.02□□□□□ -0.81
HPS4-216ENST00000493455 LINC00474Q9P2X8 69 aa10.02□□□□□ -0.81
HPS4-216ENST00000493455 TP73-AS1Q9UF72 201 aa10.02□□□□□ -0.81
HPS4-216ENST00000493455 A0A087WYN8 130 aa10.01□□□□□ -0.81
HPS4-216ENST00000493455 LOC105371267A0A1B0GV96 52 aa10.01□□□□□ -0.81
HPS4-216ENST00000493455 FAM168BA1KXE4 195 aa10.01□□□□□ -0.81
HPS4-216ENST00000493455 LINC00587B1AMM8 73 aa10.01□□□□□ -0.81
HPS4-216ENST00000493455 NPC2P61916 151 aa10.01□□□□□ -0.81
HPS4-216ENST00000493455 Q6ZSA8 131 aa10.01□□□□□ -0.81
HPS4-216ENST00000493455 CIRBPQ14011 172 aaKnown RBP10□□□□□ -0.81
HPS4-216ENST00000493455 CIRBP-AS1Q8TBR5 109 aa10□□□□□ -0.81
HPS4-216ENST00000493455 SND1-IT1Q9HBX3 110 aa10□□□□□ -0.81
HPS4-216ENST00000493455 C14orf144Q96I85 54 aa9.99□□□□□ -0.81
HPS4-216ENST00000493455 LRP1BQ9NZR2 4599 aa9.99□□□□□ -0.81
HPS4-216ENST00000493455 A0A1W2PNN7 141 aa9.98□□□□□ -0.81
HPS4-216ENST00000493455 XGP55808 180 aa9.98□□□□□ -0.81
HPS4-216ENST00000493455 S100A12P80511 92 aa9.98□□□□□ -0.81
HPS4-216ENST00000493455 ADAMTSL4-AS1Q5T5F5 129 aa9.97□□□□□ -0.81
HPS4-216ENST00000493455 SMR3BP02814 79 aaPredicted RBP9.96□□□□□ -0.82
HPS4-216ENST00000493455 COX8AP10176 69 aa9.96□□□□□ -0.82
HPS4-216ENST00000493455 SERTAD4-AS1Q5TG53 156 aa9.96□□□□□ -0.82
HPS4-216ENST00000493455 MIEN1Q9BRT3 115 aa9.96□□□□□ -0.82
HPS4-216ENST00000493455 BIRC6Q9NR09 4857 aa9.95□□□□□ -0.82
HPS4-216ENST00000493455 TMEM238C9JI98 176 aa9.95□□□□□ -0.82
HPS4-216ENST00000493455 DNAH8Q96JB1 4490 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 91.6 ms