RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 Q86TA4 180 aa6□□□□□ -1.45
HDAC3-212ENST00000492407 CHAC1Q9BUX1 264 aa6□□□□□ -1.45
HDAC3-212ENST00000492407 FLG2Q5D862 2391 aaPredicted RBP6□□□□□ -1.45
HDAC3-212ENST00000492407 SMIM26A0A096LP01 95 aa5.99□□□□□ -1.45
HDAC3-212ENST00000492407 CRIP1P50238 77 aa5.99□□□□□ -1.45
HDAC3-212ENST00000492407 UBE2G1P62253 170 aa5.99□□□□□ -1.45
HDAC3-212ENST00000492407 RPL36AP83881 106 aaKnown RBP5.99□□□□□ -1.45
HDAC3-212ENST00000492407 LINC01559Q495D7 138 aa5.99□□□□□ -1.45
HDAC3-212ENST00000492407 C14orf178Q8N769 122 aaPredicted RBP5.99□□□□□ -1.45
HDAC3-212ENST00000492407 RPL36ALQ969Q0 106 aaKnown RBP5.99□□□□□ -1.45
HDAC3-212ENST00000492407 LINC01600Q96MT4 127 aa5.99□□□□□ -1.45
HDAC3-212ENST00000492407 PHLDA3Q9Y5J5 127 aa5.99□□□□□ -1.45
HDAC3-212ENST00000492407 TRBV7-3A0A075B6L6 115 aa5.98□□□□□ -1.45
HDAC3-212ENST00000492407 H3BVH4 76 aa5.98□□□□□ -1.45
HDAC3-212ENST00000492407 IGLV2-8P01709 118 aa5.98□□□□□ -1.45
HDAC3-212ENST00000492407 C2orf91Q6ZV80 131 aa5.98□□□□□ -1.45
HDAC3-212ENST00000492407 SCXQ7RTU7 201 aa5.98□□□□□ -1.45
HDAC3-212ENST00000492407 PRR15Q8IV56 129 aa5.98□□□□□ -1.45
HDAC3-212ENST00000492407 Q8N3U1 123 aa5.98□□□□□ -1.45
HDAC3-212ENST00000492407 HIGD1BQ9P298 99 aa5.98□□□□□ -1.45
HDAC3-212ENST00000492407 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.97□□□□□ -1.45
HDAC3-212ENST00000492407 IGKV2D-24A0A075B6R9 120 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 A8MWL6 223 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 LECT2O14960 151 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 SH2D1AO60880 128 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 LTAP01374 205 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 UBE2D3P61077 147 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 UBE2D2P62837 147 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 ZNF726P1Q15940 193 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 ZC2HC1AQ96GY0 325 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 GNB1LQ9BYB4 327 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 KLK12Q9UKR0 248 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 SERP1Q9Y6X1 66 aa5.97□□□□□ -1.45
HDAC3-212ENST00000492407 TRBV6-8A0A0A6YYG3 113 aa5.96□□□□□ -1.46
HDAC3-212ENST00000492407 KRTAP10-4P60372 401 aaPredicted RBP5.96□□□□□ -1.46
HDAC3-212ENST00000492407 FAM74A4Q5TZK3 123 aa5.96□□□□□ -1.46
HDAC3-212ENST00000492407 LINC01545Q5VT33 79 aa5.96□□□□□ -1.46
HDAC3-212ENST00000492407 PRR26Q8N8Z3 221 aa5.96□□□□□ -1.46
HDAC3-212ENST00000492407 UBE2WQ96B02 151 aa5.96□□□□□ -1.46
HDAC3-212ENST00000492407 HMCN2Q8NDA2 5059 aa5.95□□□□□ -1.46
HDAC3-212ENST00000492407 TRBV7-6A0A0J9YX20 115 aa5.95□□□□□ -1.46
HDAC3-212ENST00000492407 GRIFINA4D1Z8 144 aa5.95□□□□□ -1.46
HDAC3-212ENST00000492407 VCYO14598 125 aa5.95□□□□□ -1.46
HDAC3-212ENST00000492407 APCSP02743 223 aa5.95□□□□□ -1.46
HDAC3-212ENST00000492407 RPL23P62829 140 aaKnown RBP5.95□□□□□ -1.46
HDAC3-212ENST00000492407 MRPS36P82909 103 aaKnown RBP5.95□□□□□ -1.46
HDAC3-212ENST00000492407 FAM213BQ8TBF2 198 aa5.95□□□□□ -1.46
HDAC3-212ENST00000492407 CIRBP-AS1Q8TBR5 109 aa5.95□□□□□ -1.46
HDAC3-212ENST00000492407 C2orf48Q96LS8 159 aa5.95□□□□□ -1.46
HDAC3-212ENST00000492407 M0R381 172 aa5.94□□□□□ -1.46
HDAC3-212ENST00000492407 CRPP02741 224 aa5.94□□□□□ -1.46
HDAC3-212ENST00000492407 MIAQ16674 131 aa5.94□□□□□ -1.46
HDAC3-212ENST00000492407 ENHOQ6UWT2 76 aa5.94□□□□□ -1.46
HDAC3-212ENST00000492407 MRPL18Q9H0U6 180 aaKnown RBP5.94□□□□□ -1.46
HDAC3-212ENST00000492407 AMN1Q8IY45 258 aa5.93□□□□□ -1.46
HDAC3-212ENST00000492407 CEND1Q8N111 149 aa5.93□□□□□ -1.46
HDAC3-212ENST00000492407 LINC01561Q8N1V8 128 aa5.93□□□□□ -1.46
HDAC3-212ENST00000492407 TSKUQ8WUA8 353 aa5.93□□□□□ -1.46
HDAC3-212ENST00000492407 PRR34Q9NV39 138 aa5.93□□□□□ -1.46
HDAC3-212ENST00000492407 SMKR1H3BMG3 65 aa5.92□□□□□ -1.46
HDAC3-212ENST00000492407 ATOX1O00244 68 aa5.92□□□□□ -1.46
HDAC3-212ENST00000492407 CXCL5P42830 114 aa5.92□□□□□ -1.46
HDAC3-212ENST00000492407 NEXN-AS1Q8NBZ9 246 aa5.92□□□□□ -1.46
HDAC3-212ENST00000492407 SMIM7Q9BQ49 75 aa5.92□□□□□ -1.46
HDAC3-212ENST00000492407 TMSB15BA0A087X1C1 80 aa5.91□□□□□ -1.46
HDAC3-212ENST00000492407 IGHV1-24A0A0C4DH33 117 aa5.91□□□□□ -1.46
HDAC3-212ENST00000492407 H3BT86 120 aa5.91□□□□□ -1.46
HDAC3-212ENST00000492407 ANGP03950 147 aaKnown RBP5.91□□□□□ -1.46
HDAC3-212ENST00000492407 SCGB1C2P0DMR2 95 aa5.91□□□□□ -1.46
HDAC3-212ENST00000492407 SRSF9Q13242 221 aaKnown RBP eCLIP5.91□□□□□ -1.46
HDAC3-212ENST00000492407 ZNF56Q15929 161 aa5.91□□□□□ -1.46
HDAC3-212ENST00000492407 C9orf163Q8N9P6 203 aa5.91□□□□□ -1.46
HDAC3-212ENST00000492407 CHCHD5Q9BSY4 110 aa5.91□□□□□ -1.46
HDAC3-212ENST00000492407 TRAV8-4A0A0B4J246 113 aa5.9□□□□□ -1.46
HDAC3-212ENST00000492407 hDV102S1A0JD36 115 aa5.9□□□□□ -1.46
HDAC3-212ENST00000492407 IGKCP01834 107 aa5.9□□□□□ -1.46
HDAC3-212ENST00000492407 RPL37AP61513 92 aaKnown RBP5.9□□□□□ -1.46
HDAC3-212ENST00000492407 CCL20P78556 96 aa5.9□□□□□ -1.46
HDAC3-212ENST00000492407 SPANXN1Q5VSR9 72 aa5.9□□□□□ -1.46
HDAC3-212ENST00000492407 KIF25-AS1Q9Y6Z4 181 aa5.9□□□□□ -1.46
HDAC3-212ENST00000492407 LRP1Q07954 4544 aaKnown RBP5.89□□□□□ -1.47
HDAC3-212ENST00000492407 TRBV25-1A0A075B6N4 114 aa5.89□□□□□ -1.47
HDAC3-212ENST00000492407 F5H697 171 aa5.89□□□□□ -1.47
HDAC3-212ENST00000492407 EIF4EBP3O60516 100 aaPredicted RBP5.89□□□□□ -1.47
HDAC3-212ENST00000492407 HLA-DQA1P01909 254 aa5.89□□□□□ -1.47
HDAC3-212ENST00000492407 ACYP1P07311 99 aa5.89□□□□□ -1.47
HDAC3-212ENST00000492407 PRSS1P07477 247 aa5.89□□□□□ -1.47
HDAC3-212ENST00000492407 NPC2P61916 151 aa5.89□□□□□ -1.47
HDAC3-212ENST00000492407 CNBPP62633 177 aaKnown RBP5.89□□□□□ -1.47
HDAC3-212ENST00000492407 SCGB1D4Q6XE38 83 aa5.89□□□□□ -1.47
HDAC3-212ENST00000492407 FAT3Q8TDW7 4589 aa5.88□□□□□ -1.47
HDAC3-212ENST00000492407 A0A1B0GUV1 79 aa5.88□□□□□ -1.47
HDAC3-212ENST00000492407 CIRBPQ14011 172 aaKnown RBP5.88□□□□□ -1.47
HDAC3-212ENST00000492407 KRTAP26-1Q6PEX3 210 aa5.88□□□□□ -1.47
HDAC3-212ENST00000492407 SDIM1Q6ZPB5 146 aa5.88□□□□□ -1.47
HDAC3-212ENST00000492407 NTM-AS1Q6ZSK4 140 aa5.88□□□□□ -1.47
HDAC3-212ENST00000492407 CHCHD1Q96BP2 118 aaKnown RBP5.88□□□□□ -1.47
HDAC3-212ENST00000492407 RNF185Q96GF1 192 aa5.88□□□□□ -1.47
HDAC3-212ENST00000492407 DPH3P1Q9H4G8 78 aa5.88□□□□□ -1.47
HDAC3-212ENST00000492407 AP5S1Q9NUS5 200 aa5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms