RNA–Protein interactions for RNA: ENST00000490278.1

CD46-216, Transcript of CD46 molecule, humanhuman

TSL 2

Gene CD46, Length 747 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD46-216ENST00000490278 CCDC168Q8NDH2 2452 aa-0.59□□□□□ -2.5
CD46-216ENST00000490278 S100A12P80511 92 aa-0.59□□□□□ -2.5
CD46-216ENST00000490278 MRPL54Q6P161 138 aaKnown RBP-0.59□□□□□ -2.5
CD46-216ENST00000490278 TSC22D3Q99576 134 aa-0.59□□□□□ -2.5
CD46-216ENST00000490278 ARL2-SNX15V9GYD0 113 aa-0.59□□□□□ -2.5
CD46-216ENST00000490278 KIAA1109Q2LD37 5005 aa-0.59□□□□□ -2.5
CD46-216ENST00000490278 A0A0C4DFX4 3053 aa-0.59□□□□□ -2.5
CD46-216ENST00000490278 RELNP78509 3460 aa-0.59□□□□□ -2.5
CD46-216ENST00000490278 KIAA0556O60303 1618 aa-0.6□□□□□ -2.5
CD46-216ENST00000490278 NLRP1Q9C000 1473 aa-0.6□□□□□ -2.5
CD46-216ENST00000490278 MBD5Q9P267 1494 aa-0.6□□□□□ -2.5
CD46-216ENST00000490278 CMYA5Q8N3K9 4069 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 WDR87Q6ZQQ6 2873 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 LOC285095A0A1B0GVY8 99 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 APOC2P02655 101 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 COX8AP10176 69 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 FGF7P21781 194 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 CATR1Q13166 79 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 HEPN1Q6WQI6 88 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 C8orf59Q8N0T1 100 aaPredicted RBP-0.6□□□□□ -2.51
CD46-216ENST00000490278 FAIMQ9NVQ4 179 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 FOCADQ5VW36 1801 aa-0.6□□□□□ -2.51
CD46-216ENST00000490278 LOC100130705A0A1B0GUX0 176 aa-0.61□□□□□ -2.51
CD46-216ENST00000490278 H3BNG1 76 aa-0.61□□□□□ -2.51
CD46-216ENST00000490278 SSSCA1O60232 199 aa-0.61□□□□□ -2.51
CD46-216ENST00000490278 IFNGP01579 166 aa-0.61□□□□□ -2.51
CD46-216ENST00000490278 MGPP08493 103 aa-0.61□□□□□ -2.51
CD46-216ENST00000490278 SEC11AP67812 179 aa-0.61□□□□□ -2.51
CD46-216ENST00000490278 NXT2Q9NPJ8 142 aaKnown RBP-0.61□□□□□ -2.51
CD46-216ENST00000490278 MANBALQ9NQG1 85 aa-0.61□□□□□ -2.51
CD46-216ENST00000490278 DNHD1Q96M86 4753 aa-0.61□□□□□ -2.51
CD46-216ENST00000490278 TRIOO75962 3097 aa-0.61□□□□□ -2.51
CD46-216ENST00000490278 UTP20O75691 2785 aaKnown RBP-0.62□□□□□ -2.51
CD46-216ENST00000490278 MYH7P12883 1935 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 SCN7AQ01118 1682 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 LAMA3Q16787 3333 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 TULP4Q9NRJ4 1543 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 SACSQ9NZJ4 4579 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 GCN1Q92616 2671 aaKnown RBP-0.62□□□□□ -2.51
CD46-216ENST00000490278 K7EP13 123 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 UBE2D3P61077 147 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 UBE2D2P62837 147 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 HSD52Q0P140 79 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 COMMD6Q7Z4G1 85 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 C5orf38Q86SI9 138 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 TMEM263Q8WUH6 116 aaKnown RBP-0.62□□□□□ -2.51
CD46-216ENST00000490278 USMG5Q96IX5 58 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 FAM107BQ9H098 131 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 MAGI1Q96QZ7 1491 aaPredicted RBP-0.62□□□□□ -2.51
CD46-216ENST00000490278 SHANK2Q9UPX8 1470 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 NIPBLQ6KC79 2804 aaeCLIP-0.62□□□□□ -2.51
CD46-216ENST00000490278 ARHGEF5Q12774 1597 aa-0.62□□□□□ -2.51
CD46-216ENST00000490278 LRRK2Q5S007 2527 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 TEP1Q99973 2627 aaKnown RBP-0.63□□□□□ -2.51
CD46-216ENST00000490278 TCHHQ07283 1943 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 A0A087WVE0 104 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 A0A1B0GU69 56 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 FAM223BA6NKX1 122 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 H0YGG7 62 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 GNG11P61952 73 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 MYOZ3Q8TDC0 251 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 DNAH7Q8WXX0 4024 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 PAPPA2Q9BXP8 1791 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 PKD1L2Q7Z442 2459 aa-0.63□□□□□ -2.51
CD46-216ENST00000490278 SLIT1O75093 1534 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 MARF1Q9Y4F3 1742 aaKnown RBP-0.64□□□□□ -2.51
CD46-216ENST00000490278 ROBO1Q9Y6N7 1651 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 SETBP1Q9Y6X0 1596 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 C1orf167Q5SNV9 1468 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 TRAV30A0A087WSZ9 112 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 A0A1B0GWA3 101 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 OOSP1A8MZH6 123 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 I3L3M4 83 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 ASIPP42127 132 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 DEFB107AQ8IZN7 70 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 C9orf62Q8N4C0 152 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 SPRR2FQ96RM1 72 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 UQCR10Q9UDW1 63 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 MGAM2Q2M2H8 2515 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 TEX15Q9BXT5 2789 aa-0.64□□□□□ -2.51
CD46-216ENST00000490278 ANKRD11Q6UB99 2663 aaPredicted RBP-0.64□□□□□ -2.51
CD46-216ENST00000490278 RIF1Q5UIP0 2472 aaKnown RBP-0.64□□□□□ -2.51
CD46-216ENST00000490278 TET3O43151 1660 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 SPTBN5Q9NRC6 3674 aaKnown RBP-0.65□□□□□ -2.51
CD46-216ENST00000490278 HMGN1P05114 100 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 TRAPPC2P0DI81 140 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 TRAPPC2BP0DI82 140 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 SNCAP37840 140 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 Q0VG73 95 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 WFDC13Q8IUB5 93 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 C1orf54Q8WWF1 131 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 FAM167A-AS1Q96KT0 104 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 PRO1933Q9H354 126 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 RAPGEF6Q8TEU7 1601 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 COL14A1Q05707 1796 aaKnown RBP-0.65□□□□□ -2.51
CD46-216ENST00000490278 NBEAQ8NFP9 2946 aa-0.65□□□□□ -2.51
CD46-216ENST00000490278 MTORP42345 2549 aa-0.66□□□□□ -2.51
CD46-216ENST00000490278 PLEKHH2Q8IVE3 1493 aa-0.66□□□□□ -2.51
CD46-216ENST00000490278 C6orf201Q7Z4U5 140 aa-0.66□□□□□ -2.52
CD46-216ENST00000490278 SPRR4Q96PI1 79 aa-0.66□□□□□ -2.52
Retrieved 100 of 20,778 RNA–protein pairs in 88 ms