RNA–Protein interactions for RNA: ENST00000487698.5

SF3B1-211, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 2,127 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-211ENST00000487698 NUPR2A6NF83 97 aa6.32□□□□□ -1.4
SF3B1-211ENST00000487698 PRSS2P07478 247 aa6.32□□□□□ -1.4
SF3B1-211ENST00000487698 C6orf226Q5I0X4 101 aa6.32□□□□□ -1.4
SF3B1-211ENST00000487698 DAND5Q8N907 189 aa6.32□□□□□ -1.4
SF3B1-211ENST00000487698 A4D1N5 150 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 EIF4EBP3O60516 100 aaPredicted RBP6.31□□□□□ -1.4
SF3B1-211ENST00000487698 IFITM1P13164 125 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 RPL24P83731 157 aaKnown RBP6.31□□□□□ -1.4
SF3B1-211ENST00000487698 MEIG1Q5JSS6 88 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 LYSTQ99698 3801 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 C9orf118A6NHY6 69 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 IBA57-AS1B1ANH7 110 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 APOMO95445 188 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 CXCL5P42830 114 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 C2orf82Q6UX34 121 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 RAB37Q96AX2 223 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 PPDPFQ9H3Y8 114 aa6.31□□□□□ -1.4
SF3B1-211ENST00000487698 CFC1BP0CG36 223 aa6.3□□□□□ -1.4
SF3B1-211ENST00000487698 CFC1P0CG37 223 aa6.3□□□□□ -1.4
SF3B1-211ENST00000487698 SPAG11BQ08648 103 aa6.3□□□□□ -1.4
SF3B1-211ENST00000487698 LINC00308Q8TCZ7 52 aa6.3□□□□□ -1.4
SF3B1-211ENST00000487698 C1orf43Q9BWL3 253 aa6.3□□□□□ -1.4
SF3B1-211ENST00000487698 TENM2Q9NT68 2774 aa6.3□□□□□ -1.4
SF3B1-211ENST00000487698 A0A0U1RRA0 63 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 CFAP161Q6P656 301 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 SOSTDC1Q6X4U4 206 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 ERG28Q9UKR5 140 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 STARD9Q9P2P6 4700 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 PLECQ15149 4684 aaKnown RBP6.29□□□□□ -1.4
SF3B1-211ENST00000487698 A0A0B4J2C4 111 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 CKS1BP61024 79 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 NPC2P61916 151 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 KRTAP3-3Q9BYR6 98 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 KRTAP3-2Q9BYR7 98 aa6.29□□□□□ -1.4
SF3B1-211ENST00000487698 IGKV2D-24A0A075B6R9 120 aa6.28□□□□□ -1.4
SF3B1-211ENST00000487698 TRAV16A0A0A6YYK6 109 aaPredicted RBP6.28□□□□□ -1.4
SF3B1-211ENST00000487698 H3BUT2 72 aa6.28□□□□□ -1.4
SF3B1-211ENST00000487698 MIR7-3HGQ8N6C7 128 aa6.28□□□□□ -1.4
SF3B1-211ENST00000487698 C15orf56Q8N910 161 aa6.28□□□□□ -1.4
SF3B1-211ENST00000487698 COPS9Q8WXC6 57 aa6.28□□□□□ -1.4
SF3B1-211ENST00000487698 NAA38Q9BRA0 125 aaKnown RBP6.28□□□□□ -1.4
SF3B1-211ENST00000487698 Q9HAA7 133 aa6.28□□□□□ -1.4
SF3B1-211ENST00000487698 C6orf223Q8N319 242 aa6.27□□□□□ -1.41
SF3B1-211ENST00000487698 NTN5Q8WTR8 489 aaPredicted RBP6.27□□□□□ -1.41
SF3B1-211ENST00000487698 KRTAP1-5Q9BYS1 174 aa6.27□□□□□ -1.41
SF3B1-211ENST00000487698 A0A1W2PPM0 123 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 PFN2P35080 140 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 LINC00158P58513 81 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 COX17Q14061 63 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 C10orf25Q5T742 122 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 UBE2DNLQ8IWF7 75 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 LINC00526Q96FQ7 95 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 PGPEP1Q9NXJ5 209 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 PRO1854Q9UHT4 67 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 GVQW2A0A096LPI5 108 aaPredicted RBP6.26□□□□□ -1.41
SF3B1-211ENST00000487698 TSPAN13O95857 204 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 UNQ6190/PRO20217Q6UXQ8 127 aa6.26□□□□□ -1.41
SF3B1-211ENST00000487698 RMI2Q96E14 147 aa6.25□□□□□ -1.41
SF3B1-211ENST00000487698 LOC107984156A0A0G2JMH3 177 aa6.25□□□□□ -1.41
SF3B1-211ENST00000487698 VAMP3Q15836 100 aa6.25□□□□□ -1.41
SF3B1-211ENST00000487698 ARL17AQ8IVW1 177 aa6.25□□□□□ -1.41
SF3B1-211ENST00000487698 TGP01266 2768 aa6.24□□□□□ -1.41
SF3B1-211ENST00000487698 ZNF561-AS1K7EIQ3 104 aa6.24□□□□□ -1.41
SF3B1-211ENST00000487698 HIGD2BQ4VC39 106 aa6.24□□□□□ -1.41
SF3B1-211ENST00000487698 C9orf116Q5BN46 136 aaPredicted RBP6.24□□□□□ -1.41
SF3B1-211ENST00000487698 C2orf48Q96LS8 159 aa6.24□□□□□ -1.41
SF3B1-211ENST00000487698 VPS13DQ5THJ4 4388 aa6.24□□□□□ -1.41
SF3B1-211ENST00000487698 FABP2P12104 132 aa6.23□□□□□ -1.41
SF3B1-211ENST00000487698 CASC10Q5T4H9 136 aa6.23□□□□□ -1.41
SF3B1-211ENST00000487698 C6orf48Q9UBA6 75 aa6.23□□□□□ -1.41
SF3B1-211ENST00000487698 TRBV30A0A0K0K1B3 111 aa6.23□□□□□ -1.41
SF3B1-211ENST00000487698 F8WDY8 70 aa6.23□□□□□ -1.41
SF3B1-211ENST00000487698 UBE2V1Q13404 147 aa6.23□□□□□ -1.41
SF3B1-211ENST00000487698 MUC7Q8TAX7 377 aa6.23□□□□□ -1.41
SF3B1-211ENST00000487698 K7EP34 96 aa6.22□□□□□ -1.41
SF3B1-211ENST00000487698 CAMK2N2Q96S95 79 aa6.22□□□□□ -1.41
SF3B1-211ENST00000487698 SND1-IT1Q9HBX3 110 aa6.22□□□□□ -1.41
SF3B1-211ENST00000487698 IGKV2-28A0A075B6P5 120 aa6.21□□□□□ -1.42
SF3B1-211ENST00000487698 USP17L23D6RBM5 183 aa6.21□□□□□ -1.42
SF3B1-211ENST00000487698 IGKV2D-28P01615 120 aa6.21□□□□□ -1.42
SF3B1-211ENST00000487698 Q6ZRU5 148 aa6.21□□□□□ -1.42
SF3B1-211ENST00000487698 SPCS1Q9Y6A9 102 aa6.21□□□□□ -1.42
SF3B1-211ENST00000487698 RPL13AP40429 203 aaKnown RBP6.2□□□□□ -1.42
SF3B1-211ENST00000487698 NBDYA0A0U1RRE5 68 aa6.2□□□□□ -1.42
SF3B1-211ENST00000487698 GAGE10A6NGK3 116 aa6.2□□□□□ -1.42
SF3B1-211ENST00000487698 TTC32Q5I0X7 151 aa6.2□□□□□ -1.42
SF3B1-211ENST00000487698 LINC00337Q8N6G1 96 aa6.2□□□□□ -1.42
SF3B1-211ENST00000487698 H7C2G1 150 aa6.19□□□□□ -1.42
SF3B1-211ENST00000487698 GTF2H5Q6ZYL4 71 aa6.19□□□□□ -1.42
SF3B1-211ENST00000487698 DNAH10Q8IVF4 4471 aa6.19□□□□□ -1.42
SF3B1-211ENST00000487698 NDUFC2O95298 119 aa6.19□□□□□ -1.42
SF3B1-211ENST00000487698 SYCNQ0VAF6 134 aa6.19□□□□□ -1.42
SF3B1-211ENST00000487698 Q1RN00 199 aa6.18□□□□□ -1.42
SF3B1-211ENST00000487698 TRAV13-2A0A0B4J235 113 aa6.17□□□□□ -1.42
SF3B1-211ENST00000487698 TRIAP1O43715 76 aa6.17□□□□□ -1.42
SF3B1-211ENST00000487698 SLPIP03973 132 aa6.17□□□□□ -1.42
SF3B1-211ENST00000487698 LYRM7Q5U5X0 104 aa6.17□□□□□ -1.42
SF3B1-211ENST00000487698 Q8NDZ9 215 aa6.17□□□□□ -1.42
SF3B1-211ENST00000487698 WWC2-AS2Q96NR7 200 aa6.17□□□□□ -1.42
SF3B1-211ENST00000487698 NDUFC2-KCTD14E9PQ53 114 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 95.2 ms