RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 LINC00310P59036 64 aa5.35□□□□□ -1.55
SF3A1-208ENST00000485618 KRTAP10-1P60331 282 aa5.35□□□□□ -1.55
SF3A1-208ENST00000485618 PET117Q6UWS5 81 aa5.35□□□□□ -1.55
SF3A1-208ENST00000485618 SDIM1Q6ZPB5 146 aa5.35□□□□□ -1.55
SF3A1-208ENST00000485618 COX7B2Q8TF08 81 aa5.35□□□□□ -1.55
SF3A1-208ENST00000485618 C11orf86A6NJI1 115 aa5.34□□□□□ -1.55
SF3A1-208ENST00000485618 LINC00587B1AMM8 73 aa5.34□□□□□ -1.55
SF3A1-208ENST00000485618 SMIM1B2RUZ4 78 aa5.34□□□□□ -1.55
SF3A1-208ENST00000485618 SYS1-DBNDD2H3BUS1 97 aa5.34□□□□□ -1.55
SF3A1-208ENST00000485618 SLPIP03973 132 aa5.34□□□□□ -1.55
SF3A1-208ENST00000485618 SPINK8P0C7L1 97 aa5.34□□□□□ -1.55
SF3A1-208ENST00000485618 ZNF22P17026 224 aaPredicted RBP5.34□□□□□ -1.55
SF3A1-208ENST00000485618 Q6ZRU5 148 aa5.34□□□□□ -1.55
SF3A1-208ENST00000485618 LINC00526Q96FQ7 95 aa5.34□□□□□ -1.55
SF3A1-208ENST00000485618 APOBP04114 4563 aaKnown RBP5.34□□□□□ -1.55
SF3A1-208ENST00000485618 EPM2AB3EWF7 344 aa5.33□□□□□ -1.56
SF3A1-208ENST00000485618 IGKCP01834 107 aa5.33□□□□□ -1.56
SF3A1-208ENST00000485618 KRTDAPP60985 99 aa5.33□□□□□ -1.56
SF3A1-208ENST00000485618 KIAA0087Q14695 138 aa5.33□□□□□ -1.56
SF3A1-208ENST00000485618 ODF1Q14990 250 aa5.33□□□□□ -1.56
SF3A1-208ENST00000485618 LINC01620Q4KN68 170 aa5.33□□□□□ -1.56
SF3A1-208ENST00000485618 UNQ6190/PRO20217Q6UXQ8 127 aa5.33□□□□□ -1.56
SF3A1-208ENST00000485618 IGLV5-39A0A0G2JS06 123 aa5.32□□□□□ -1.56
SF3A1-208ENST00000485618 TMEM223A0PJW6 202 aa5.32□□□□□ -1.56
SF3A1-208ENST00000485618 FAM229AH3BQW9 127 aa5.32□□□□□ -1.56
SF3A1-208ENST00000485618 TLX1NBP0CAT3 122 aa5.32□□□□□ -1.56
SF3A1-208ENST00000485618 MAJINQ3KP22 176 aa5.32□□□□□ -1.56
SF3A1-208ENST00000485618 Q6ZSA8 131 aa5.32□□□□□ -1.56
SF3A1-208ENST00000485618 PLEKHB2Q96CS7 222 aa5.32□□□□□ -1.56
SF3A1-208ENST00000485618 IGKV2-24A0A0C4DH68 120 aa5.31□□□□□ -1.56
SF3A1-208ENST00000485618 NDUFC2-KCTD14E9PQ53 114 aa5.31□□□□□ -1.56
SF3A1-208ENST00000485618 INAFM2P0DMQ5 153 aa5.31□□□□□ -1.56
SF3A1-208ENST00000485618 HERV-K104P63124 156 aa5.31□□□□□ -1.56
SF3A1-208ENST00000485618 RPL18AQ02543 176 aaKnown RBP5.31□□□□□ -1.56
SF3A1-208ENST00000485618 GAGE2BQ13066 116 aa5.31□□□□□ -1.56
SF3A1-208ENST00000485618 COX17Q14061 63 aa5.31□□□□□ -1.56
SF3A1-208ENST00000485618 C2orf82Q6UX34 121 aa5.31□□□□□ -1.56
SF3A1-208ENST00000485618 MYMXA0A1B0GTQ4 84 aa5.3□□□□□ -1.56
SF3A1-208ENST00000485618 LGALS3P17931 250 aaKnown RBP5.3□□□□□ -1.56
SF3A1-208ENST00000485618 PTTG1IPP53801 180 aa5.3□□□□□ -1.56
SF3A1-208ENST00000485618 SNRPEP62304 92 aaKnown RBP5.3□□□□□ -1.56
SF3A1-208ENST00000485618 LINC01545Q5VT33 79 aa5.3□□□□□ -1.56
SF3A1-208ENST00000485618 SPACA4Q8TDM5 124 aa5.3□□□□□ -1.56
SF3A1-208ENST00000485618 C7orf33Q8WU49 177 aa5.3□□□□□ -1.56
SF3A1-208ENST00000485618 C6orf48Q9UBA6 75 aa5.3□□□□□ -1.56
SF3A1-208ENST00000485618 LEPROTO15243 131 aa5.29□□□□□ -1.56
SF3A1-208ENST00000485618 C3orf79P0CE67 100 aa5.29□□□□□ -1.56
SF3A1-208ENST00000485618 NMUP48645 174 aa5.29□□□□□ -1.56
SF3A1-208ENST00000485618 CIRBPQ14011 172 aaKnown RBP5.29□□□□□ -1.56
SF3A1-208ENST00000485618 C10orf25Q5T742 122 aa5.29□□□□□ -1.56
SF3A1-208ENST00000485618 HIST3H2BBQ8N257 126 aa5.29□□□□□ -1.56
SF3A1-208ENST00000485618 STPG4Q8N801 248 aa5.29□□□□□ -1.56
SF3A1-208ENST00000485618 DMBT1Q9UGM3 2413 aaPredicted RBP5.28□□□□□ -1.56
SF3A1-208ENST00000485618 HSBP1L1C9JCN9 74 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 PLA2G1BP04054 148 aaKnown RBP5.28□□□□□ -1.56
SF3A1-208ENST00000485618 XGP55808 180 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 GAGE2EQ4V326 116 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 Q5VSD8 79 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 SCXQ7RTU7 201 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 CIRBP-AS1Q8TBR5 109 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 HIST1H2BLQ99880 126 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 PMCHL2Q9BQD1 86 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 PLAC8Q9NZF1 115 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 FAM30AQ9NZY2 134 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 GAGE2DQ9UEU5 116 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 NDUFA12Q9UI09 145 aa5.28□□□□□ -1.56
SF3A1-208ENST00000485618 DNAH5Q8TE73 4624 aa5.27□□□□□ -1.57
SF3A1-208ENST00000485618 A0A087WYN8 130 aa5.27□□□□□ -1.57
SF3A1-208ENST00000485618 A0A096LNI7 61 aa5.27□□□□□ -1.57
SF3A1-208ENST00000485618 J3QQQ9 107 aa5.27□□□□□ -1.57
SF3A1-208ENST00000485618 Q6ZRP5 223 aa5.27□□□□□ -1.57
SF3A1-208ENST00000485618 ERG28Q9UKR5 140 aa5.27□□□□□ -1.57
SF3A1-208ENST00000485618 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.27□□□□□ -1.57
SF3A1-208ENST00000485618 C5orf52A6NGY3 159 aa5.26□□□□□ -1.57
SF3A1-208ENST00000485618 E9PLD3 99 aa5.26□□□□□ -1.57
SF3A1-208ENST00000485618 CHTF8P0CG12 524 aa5.26□□□□□ -1.57
SF3A1-208ENST00000485618 PFN2P35080 140 aa5.26□□□□□ -1.57
SF3A1-208ENST00000485618 LINC00158P58513 81 aa5.26□□□□□ -1.57
SF3A1-208ENST00000485618 LBHQ53QV2 105 aaPredicted RBP5.26□□□□□ -1.57
SF3A1-208ENST00000485618 MEIG1Q5JSS6 88 aa5.26□□□□□ -1.57
SF3A1-208ENST00000485618 SCGB1D1O95968 90 aa5.25□□□□□ -1.57
SF3A1-208ENST00000485618 RPL24P83731 157 aaKnown RBP5.25□□□□□ -1.57
SF3A1-208ENST00000485618 C9orf116Q5BN46 136 aaPredicted RBP5.25□□□□□ -1.57
SF3A1-208ENST00000485618 ZNF625Q96I27 306 aaPredicted RBP5.25□□□□□ -1.57
SF3A1-208ENST00000485618 SMR3BP02814 79 aaPredicted RBP5.24□□□□□ -1.57
SF3A1-208ENST00000485618 LINC00528Q8N1L1 170 aa5.24□□□□□ -1.57
SF3A1-208ENST00000485618 NKAPP1Q8N9T2 125 aa5.24□□□□□ -1.57
SF3A1-208ENST00000485618 COPS9Q8WXC6 57 aa5.24□□□□□ -1.57
SF3A1-208ENST00000485618 PANO1I0J062 215 aa5.23□□□□□ -1.57
SF3A1-208ENST00000485618 HAMPP81172 84 aa5.23□□□□□ -1.57
SF3A1-208ENST00000485618 MIEN1Q9BRT3 115 aa5.23□□□□□ -1.57
SF3A1-208ENST00000485618 PLA2G2DQ9UNK4 145 aa5.23□□□□□ -1.57
SF3A1-208ENST00000485618 SRRM2Q9UQ35 2752 aaKnown RBP5.22□□□□□ -1.57
SF3A1-208ENST00000485618 HMCN2Q8NDA2 5059 aa5.22□□□□□ -1.57
SF3A1-208ENST00000485618 MYCBP2O75592 4640 aa5.22□□□□□ -1.57
SF3A1-208ENST00000485618 RPL37AP61513 92 aaKnown RBP5.22□□□□□ -1.57
SF3A1-208ENST00000485618 S100A12P80511 92 aa5.22□□□□□ -1.57
SF3A1-208ENST00000485618 FAM19A5Q7Z5A7 132 aaPredicted RBP5.22□□□□□ -1.57
SF3A1-208ENST00000485618 XAGE1AQ9HD64 81 aa5.22□□□□□ -1.57
SF3A1-208ENST00000485618 TP73-AS1Q9UF72 201 aa5.22□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms