RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 SCO1O75880 301 aa10.06□□□□□ -0.8
UPF3A-208ENST00000484246 PLA2G1BP04054 148 aaKnown RBP10.06□□□□□ -0.8
UPF3A-208ENST00000484246 LINC00310P59036 64 aa10.06□□□□□ -0.8
UPF3A-208ENST00000484246 C10orf25Q5T742 122 aa10.06□□□□□ -0.8
UPF3A-208ENST00000484246 VPS13BQ7Z7G8 4022 aa10.05□□□□□ -0.8
UPF3A-208ENST00000484246 IGKV2-24A0A0C4DH68 120 aa10.05□□□□□ -0.8
UPF3A-208ENST00000484246 KRTAP10-4P60372 401 aaPredicted RBP10.05□□□□□ -0.8
UPF3A-208ENST00000484246 MAJINQ3KP22 176 aa10.05□□□□□ -0.8
UPF3A-208ENST00000484246 UNQ6190/PRO20217Q6UXQ8 127 aa10.05□□□□□ -0.8
UPF3A-208ENST00000484246 C6orf48Q9UBA6 75 aa10.05□□□□□ -0.8
UPF3A-208ENST00000484246 PRSS2P07478 247 aa10.04□□□□□ -0.8
UPF3A-208ENST00000484246 CXCL5P42830 114 aa10.04□□□□□ -0.8
UPF3A-208ENST00000484246 TRAV12-1A0A0B4J245 112 aa10.03□□□□□ -0.8
UPF3A-208ENST00000484246 H3BRM9 83 aa10.03□□□□□ -0.8
UPF3A-208ENST00000484246 SERF1AO75920 110 aa10.03□□□□□ -0.8
UPF3A-208ENST00000484246 IFI27L1Q96BM0 104 aa10.03□□□□□ -0.8
UPF3A-208ENST00000484246 C2orf82Q6UX34 121 aa10.02□□□□□ -0.81
UPF3A-208ENST00000484246 STPG4Q8N801 248 aa10.02□□□□□ -0.81
UPF3A-208ENST00000484246 IGLV5-39A0A0G2JS06 123 aa10.01□□□□□ -0.81
UPF3A-208ENST00000484246 ZNF22P17026 224 aaPredicted RBP10.01□□□□□ -0.81
UPF3A-208ENST00000484246 GAGE2BQ13066 116 aa10.01□□□□□ -0.81
UPF3A-208ENST00000484246 C6orf226Q5I0X4 101 aa10.01□□□□□ -0.81
UPF3A-208ENST00000484246 TOMM7Q9P0U1 55 aa10.01□□□□□ -0.81
UPF3A-208ENST00000484246 F8VRH5 84 aa10□□□□□ -0.81
UPF3A-208ENST00000484246 NDUFA6P56556 154 aa10□□□□□ -0.81
UPF3A-208ENST00000484246 CKS1BP61024 79 aa10□□□□□ -0.81
UPF3A-208ENST00000484246 RPL18AQ02543 176 aaKnown RBP10□□□□□ -0.81
UPF3A-208ENST00000484246 FAM19A2Q8N3H0 131 aa10□□□□□ -0.81
UPF3A-208ENST00000484246 DPH3Q96FX2 82 aa10□□□□□ -0.81
UPF3A-208ENST00000484246 C11orf86A6NJI1 115 aa9.99□□□□□ -0.81
UPF3A-208ENST00000484246 NDUFC2-KCTD14E9PQ53 114 aa9.99□□□□□ -0.81
UPF3A-208ENST00000484246 INAFM2P0DMQ5 153 aa9.99□□□□□ -0.81
UPF3A-208ENST00000484246 RPL37AP61513 92 aaKnown RBP9.99□□□□□ -0.81
UPF3A-208ENST00000484246 Q6ZRP5 223 aa9.99□□□□□ -0.81
UPF3A-208ENST00000484246 COX7B2Q8TF08 81 aa9.99□□□□□ -0.81
UPF3A-208ENST00000484246 HIST1H2BKO60814 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST1H2BJP06899 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 SPINK8P0C7L1 97 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 S100A1P23297 94 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST1H2BOP23527 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST1H2BBP33778 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST1H2BDP58876 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST1H2BCP62807 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST2H2BEQ16778 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST1H2BHQ93079 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST1H2BNQ99877 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 HIST1H2BMQ99879 126 aa9.98□□□□□ -0.81
UPF3A-208ENST00000484246 CHTOPQ9Y3Y2 248 aaKnown RBP9.98□□□□□ -0.81
UPF3A-208ENST00000484246 NUPR1O60356 82 aa9.97□□□□□ -0.81
UPF3A-208ENST00000484246 LEPROTL1O95214 131 aa9.97□□□□□ -0.81
UPF3A-208ENST00000484246 C7orf33Q8WU49 177 aa9.97□□□□□ -0.81
UPF3A-208ENST00000484246 HSPB8Q9UJY1 196 aa9.97□□□□□ -0.81
UPF3A-208ENST00000484246 C9orf116Q5BN46 136 aaPredicted RBP9.96□□□□□ -0.82
UPF3A-208ENST00000484246 A0A1W2PNN7 141 aa9.95□□□□□ -0.82
UPF3A-208ENST00000484246 ODF1Q14990 250 aa9.94□□□□□ -0.82
UPF3A-208ENST00000484246 COA6Q5JTJ3 125 aaKnown RBP9.94□□□□□ -0.82
UPF3A-208ENST00000484246 TMEM238LA0A1B0GVL6 79 aa9.93□□□□□ -0.82
UPF3A-208ENST00000484246 ATP6V1G1O75348 118 aa9.93□□□□□ -0.82
UPF3A-208ENST00000484246 TMEM170BQ5T4T1 132 aa9.93□□□□□ -0.82
UPF3A-208ENST00000484246 SFTA2Q6UW10 78 aa9.93□□□□□ -0.82
UPF3A-208ENST00000484246 SRRM2Q9UQ35 2752 aaKnown RBP9.93□□□□□ -0.82
UPF3A-208ENST00000484246 TMEM223A0PJW6 202 aa9.91□□□□□ -0.82
UPF3A-208ENST00000484246 GAGE2EQ4V326 116 aa9.91□□□□□ -0.82
UPF3A-208ENST00000484246 C9orf129Q5T035 196 aaKnown RBP9.91□□□□□ -0.82
UPF3A-208ENST00000484246 GAGE2DQ9UEU5 116 aa9.91□□□□□ -0.82
UPF3A-208ENST00000484246 PRR3P79522 188 aaKnown RBP9.9□□□□□ -0.82
UPF3A-208ENST00000484246 PLNP26678 52 aa9.89□□□□□ -0.83
UPF3A-208ENST00000484246 KRTAP7-1Q8IUC3 87 aa9.89□□□□□ -0.83
UPF3A-208ENST00000484246 ZNF625Q96I27 306 aaPredicted RBP9.89□□□□□ -0.83
UPF3A-208ENST00000484246 FABP4P15090 132 aa9.88□□□□□ -0.83
UPF3A-208ENST00000484246 FAM168BA1KXE4 195 aa9.87□□□□□ -0.83
UPF3A-208ENST00000484246 HNRNPA3P51991 378 aaKnown RBP9.87□□□□□ -0.83
UPF3A-208ENST00000484246 MAP1LC3CQ9BXW4 147 aa9.87□□□□□ -0.83
UPF3A-208ENST00000484246 COX17Q14061 63 aa9.86□□□□□ -0.83
UPF3A-208ENST00000484246 FAM19A5Q7Z5A7 132 aaPredicted RBP9.86□□□□□ -0.83
UPF3A-208ENST00000484246 MYCBP2O75592 4640 aa9.86□□□□□ -0.83
UPF3A-208ENST00000484246 H0Y8G0 127 aa9.85□□□□□ -0.83
UPF3A-208ENST00000484246 DPM2O94777 84 aa9.85□□□□□ -0.83
UPF3A-208ENST00000484246 PHF5AQ7RTV0 110 aaKnown RBP9.85□□□□□ -0.83
UPF3A-208ENST00000484246 XAGE1AQ9HD64 81 aa9.85□□□□□ -0.83
UPF3A-208ENST00000484246 PLA2G2DQ9UNK4 145 aa9.85□□□□□ -0.83
UPF3A-208ENST00000484246 PKHD1L1Q86WI1 4243 aa9.84□□□□□ -0.83
UPF3A-208ENST00000484246 M0QXV9 152 aa9.84□□□□□ -0.83
UPF3A-208ENST00000484246 TP73-AS1Q9UF72 201 aa9.84□□□□□ -0.83
UPF3A-208ENST00000484246 ERG28Q9UKR5 140 aa9.84□□□□□ -0.83
UPF3A-208ENST00000484246 KRTAP29-1A8MX34 341 aaPredicted RBP9.83□□□□□ -0.84
UPF3A-208ENST00000484246 SYS1-DBNDD2H3BUS1 97 aa9.83□□□□□ -0.84
UPF3A-208ENST00000484246 SERTAD4-AS1Q5TG53 156 aa9.83□□□□□ -0.84
UPF3A-208ENST00000484246 FLG2Q5D862 2391 aaPredicted RBP9.83□□□□□ -0.84
UPF3A-208ENST00000484246 DMBT1Q9UGM3 2413 aaPredicted RBP9.83□□□□□ -0.84
UPF3A-208ENST00000484246 IGKCP01834 107 aa9.82□□□□□ -0.84
UPF3A-208ENST00000484246 PSORS1C2Q9UIG4 136 aa9.82□□□□□ -0.84
UPF3A-208ENST00000484246 UBR4Q5T4S7 5183 aa9.81□□□□□ -0.84
UPF3A-208ENST00000484246 IGLV5-37A0A075B6J1 123 aa9.81□□□□□ -0.84
UPF3A-208ENST00000484246 OXTP01178 125 aa9.8□□□□□ -0.84
UPF3A-208ENST00000484246 HERVK_113P61574 105 aa9.8□□□□□ -0.84
UPF3A-208ENST00000484246 HERV-K104P63124 156 aa9.8□□□□□ -0.84
UPF3A-208ENST00000484246 LINC01545Q5VT33 79 aa9.8□□□□□ -0.84
UPF3A-208ENST00000484246 PET117Q6UWS5 81 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms