RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 IGKV2-24A0A0C4DH68 120 aa12.67□□□□□ -0.38
COL9A3-204ENST00000463487 HAMPP81172 84 aa12.67□□□□□ -0.38
COL9A3-204ENST00000463487 CIRBPQ14011 172 aaKnown RBP12.67□□□□□ -0.38
COL9A3-204ENST00000463487 PLNP26678 52 aa12.66□□□□□ -0.38
COL9A3-204ENST00000463487 RPL18AQ02543 176 aaKnown RBP12.66□□□□□ -0.38
COL9A3-204ENST00000463487 ODF1Q14990 250 aa12.66□□□□□ -0.38
COL9A3-204ENST00000463487 C2orf82Q6UX34 121 aa12.66□□□□□ -0.38
COL9A3-204ENST00000463487 SPACA4Q8TDM5 124 aa12.66□□□□□ -0.38
COL9A3-204ENST00000463487 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.66□□□□□ -0.38
COL9A3-204ENST00000463487 MAJINQ3KP22 176 aa12.65□□□□□ -0.38
COL9A3-204ENST00000463487 C10orf25Q5T742 122 aa12.65□□□□□ -0.38
COL9A3-204ENST00000463487 CIRBP-AS1Q8TBR5 109 aa12.65□□□□□ -0.38
COL9A3-204ENST00000463487 C6orf48Q9UBA6 75 aa12.65□□□□□ -0.38
COL9A3-204ENST00000463487 A0A096LNI7 61 aa12.64□□□□□ -0.39
COL9A3-204ENST00000463487 CHTF8P0CG12 524 aa12.64□□□□□ -0.39
COL9A3-204ENST00000463487 GAGE2BQ13066 116 aa12.64□□□□□ -0.39
COL9A3-204ENST00000463487 SFTA2Q6UW10 78 aa12.64□□□□□ -0.39
COL9A3-204ENST00000463487 Q8N1X5 172 aa12.64□□□□□ -0.39
COL9A3-204ENST00000463487 KIAA1109Q2LD37 5005 aa12.63□□□□□ -0.39
COL9A3-204ENST00000463487 IGLV5-39A0A0G2JS06 123 aa12.63□□□□□ -0.39
COL9A3-204ENST00000463487 TLX1NBP0CAT3 122 aa12.63□□□□□ -0.39
COL9A3-204ENST00000463487 PTTG1IPP53801 180 aa12.63□□□□□ -0.39
COL9A3-204ENST00000463487 FAM229AH3BQW9 127 aa12.62□□□□□ -0.39
COL9A3-204ENST00000463487 DPM2O94777 84 aa12.62□□□□□ -0.39
COL9A3-204ENST00000463487 S100A6P06703 90 aa12.62□□□□□ -0.39
COL9A3-204ENST00000463487 PANO1I0J062 215 aa12.61□□□□□ -0.39
COL9A3-204ENST00000463487 A0A087WYN8 130 aa12.6□□□□□ -0.39
COL9A3-204ENST00000463487 TMEM223A0PJW6 202 aa12.6□□□□□ -0.39
COL9A3-204ENST00000463487 NDUFC2-KCTD14E9PQ53 114 aa12.6□□□□□ -0.39
COL9A3-204ENST00000463487 SMR3BP02814 79 aaPredicted RBP12.6□□□□□ -0.39
COL9A3-204ENST00000463487 STPG4Q8N801 248 aa12.6□□□□□ -0.39
COL9A3-204ENST00000463487 EPM2AB3EWF7 344 aa12.59□□□□□ -0.39
COL9A3-204ENST00000463487 SYS1-DBNDD2H3BUS1 97 aa12.59□□□□□ -0.39
COL9A3-204ENST00000463487 IGKCP01834 107 aa12.59□□□□□ -0.39
COL9A3-204ENST00000463487 HERVK_113P61574 105 aa12.59□□□□□ -0.39
COL9A3-204ENST00000463487 PLAC8Q9NZF1 115 aa12.59□□□□□ -0.39
COL9A3-204ENST00000463487 S100A2P29034 98 aa12.57□□□□□ -0.4
COL9A3-204ENST00000463487 PET117Q6UWS5 81 aa12.57□□□□□ -0.4
COL9A3-204ENST00000463487 LINC00528Q8N1L1 170 aa12.57□□□□□ -0.4
COL9A3-204ENST00000463487 RYR1P21817 5038 aa12.57□□□□□ -0.4
COL9A3-204ENST00000463487 GAGE2EQ4V326 116 aa12.56□□□□□ -0.4
COL9A3-204ENST00000463487 Q6ZRP5 223 aa12.56□□□□□ -0.4
COL9A3-204ENST00000463487 PMCHL2Q9BQD1 86 aa12.56□□□□□ -0.4
COL9A3-204ENST00000463487 GAGE2DQ9UEU5 116 aa12.56□□□□□ -0.4
COL9A3-204ENST00000463487 APOBP04114 4563 aaKnown RBP12.55□□□□□ -0.4
COL9A3-204ENST00000463487 C20orf202A1L168 122 aa12.55□□□□□ -0.4
COL9A3-204ENST00000463487 PLA2G1BP04054 148 aaKnown RBP12.55□□□□□ -0.4
COL9A3-204ENST00000463487 KRTDAPP60985 99 aa12.55□□□□□ -0.4
COL9A3-204ENST00000463487 C9orf116Q5BN46 136 aaPredicted RBP12.55□□□□□ -0.4
COL9A3-204ENST00000463487 Q5VSD8 79 aa12.55□□□□□ -0.4
COL9A3-204ENST00000463487 C7orf33Q8WU49 177 aa12.54□□□□□ -0.4
COL9A3-204ENST00000463487 AKR1D1P51857 326 aa12.53□□□□□ -0.4
COL9A3-204ENST00000463487 HSPG2P98160 4391 aa12.52□□□□□ -0.4
COL9A3-204ENST00000463487 C3orf79P0CE67 100 aa12.52□□□□□ -0.41
COL9A3-204ENST00000463487 LINC01545Q5VT33 79 aa12.52□□□□□ -0.41
COL9A3-204ENST00000463487 PLEKHB2Q96CS7 222 aa12.52□□□□□ -0.41
COL9A3-204ENST00000463487 COX17Q14061 63 aa12.51□□□□□ -0.41
COL9A3-204ENST00000463487 HERV-K104P63124 156 aa12.5□□□□□ -0.41
COL9A3-204ENST00000463487 HIST3H2BBQ8N257 126 aa12.5□□□□□ -0.41
COL9A3-204ENST00000463487 LEPROTO15243 131 aa12.49□□□□□ -0.41
COL9A3-204ENST00000463487 ZNF625Q96I27 306 aaPredicted RBP12.49□□□□□ -0.41
COL9A3-204ENST00000463487 ERG28Q9UKR5 140 aa12.49□□□□□ -0.41
COL9A3-204ENST00000463487 HERC2O95714 4834 aa12.48□□□□□ -0.41
COL9A3-204ENST00000463487 MYMXA0A1B0GTQ4 84 aa12.48□□□□□ -0.41
COL9A3-204ENST00000463487 LINC00587B1AMM8 73 aa12.48□□□□□ -0.41
COL9A3-204ENST00000463487 DNAH8Q96JB1 4490 aa12.48□□□□□ -0.41
COL9A3-204ENST00000463487 LGALS3P17931 250 aaKnown RBP12.47□□□□□ -0.41
COL9A3-204ENST00000463487 PFN2P35080 140 aa12.47□□□□□ -0.41
COL9A3-204ENST00000463487 RPL37AP61513 92 aaKnown RBP12.47□□□□□ -0.41
COL9A3-204ENST00000463487 NDUFA12Q9UI09 145 aa12.47□□□□□ -0.41
COL9A3-204ENST00000463487 A0A1W2PNN7 141 aa12.46□□□□□ -0.41
COL9A3-204ENST00000463487 NMUP48645 174 aa12.46□□□□□ -0.41
COL9A3-204ENST00000463487 HIST1H2BLQ99880 126 aa12.46□□□□□ -0.41
COL9A3-204ENST00000463487 J3QQQ9 107 aa12.45□□□□□ -0.42
COL9A3-204ENST00000463487 MEIG1Q5JSS6 88 aa12.45□□□□□ -0.42
COL9A3-204ENST00000463487 FAM19A5Q7Z5A7 132 aaPredicted RBP12.45□□□□□ -0.42
COL9A3-204ENST00000463487 XAGE1AQ9HD64 81 aa12.45□□□□□ -0.42
COL9A3-204ENST00000463487 E9PLD3 99 aa12.44□□□□□ -0.42
COL9A3-204ENST00000463487 SNRPEP62304 92 aaKnown RBP12.44□□□□□ -0.42
COL9A3-204ENST00000463487 C9orf129Q5T035 196 aaKnown RBP12.44□□□□□ -0.42
COL9A3-204ENST00000463487 LINC00158P58513 81 aa12.43□□□□□ -0.42
COL9A3-204ENST00000463487 FAM168BA1KXE4 195 aa12.41□□□□□ -0.42
COL9A3-204ENST00000463487 M0QXV9 152 aa12.41□□□□□ -0.42
COL9A3-204ENST00000463487 KRTAP17-1Q9BYP8 105 aa12.41□□□□□ -0.42
COL9A3-204ENST00000463487 C5orf52A6NGY3 159 aa12.4□□□□□ -0.42
COL9A3-204ENST00000463487 TSPEAR-AS2P59090 65 aa12.4□□□□□ -0.42
COL9A3-204ENST00000463487 KRTAP4-5Q9BYR2 181 aa12.39□□□□□ -0.43
COL9A3-204ENST00000463487 LBHQ53QV2 105 aaPredicted RBP12.38□□□□□ -0.43
COL9A3-204ENST00000463487 PHF5AQ7RTV0 110 aaKnown RBP12.38□□□□□ -0.43
COL9A3-204ENST00000463487 SND1-IT1Q9HBX3 110 aa12.38□□□□□ -0.43
COL9A3-204ENST00000463487 PLA2G2DQ9UNK4 145 aa12.38□□□□□ -0.43
COL9A3-204ENST00000463487 INAFM2P0DMQ5 153 aa12.37□□□□□ -0.43
COL9A3-204ENST00000463487 UBE2BP63146 152 aa12.37□□□□□ -0.43
COL9A3-204ENST00000463487 A0A0U1RRA0 63 aa12.36□□□□□ -0.43
COL9A3-204ENST00000463487 SMIM13P0DJ93 91 aa12.36□□□□□ -0.43
COL9A3-204ENST00000463487 RPL24P83731 157 aaKnown RBP12.36□□□□□ -0.43
COL9A3-204ENST00000463487 NKAPP1Q8N9T2 125 aa12.36□□□□□ -0.43
COL9A3-204ENST00000463487 TP73-AS1Q9UF72 201 aa12.36□□□□□ -0.43
COL9A3-204ENST00000463487 SERTAD4-AS1Q5TG53 156 aa12.35□□□□□ -0.43
COL9A3-204ENST00000463487 PRR3P79522 188 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms