RNA–Protein interactions for RNA: ENST00000462815.5

PTPN7-204, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,147 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-204	ENST00000462815	TIMM21	Q9BVV7	248 aa		6.72	□□□□□ -1.33
PTPN7-204	ENST00000462815	MRPL35	Q9NZE8	188 aa	Known RBP	6.72	□□□□□ -1.33
PTPN7-204	ENST00000462815	TRAV13-1	A0A0B4J241	112 aa		6.71	□□□□□ -1.34
PTPN7-204	ENST00000462815	IGHV3OR16-9	A0A0B4J2B5	98 aa		6.71	□□□□□ -1.34
PTPN7-204	ENST00000462815	C5orf52	A6NGY3	159 aa		6.71	□□□□□ -1.34
PTPN7-204	ENST00000462815	TLX1NB	P0CAT3	122 aa		6.71	□□□□□ -1.34
PTPN7-204	ENST00000462815	RPL39	P62891	51 aa	Known RBP	6.71	□□□□□ -1.34
PTPN7-204	ENST00000462815	PMCHL1	Q16048	86 aa		6.71	□□□□□ -1.34
PTPN7-204	ENST00000462815	C10orf25	Q5T742	122 aa		6.71	□□□□□ -1.34
PTPN7-204	ENST00000462815	FAM19A2	Q8N3H0	131 aa		6.71	□□□□□ -1.34
PTPN7-204	ENST00000462815	OR10D4P	Q8NGN7	298 aa		6.71	□□□□□ -1.34
PTPN7-204	ENST00000462815	HSBP1	O75506	76 aa		6.7	□□□□□ -1.34
PTPN7-204	ENST00000462815	SNRPE	P62304	92 aa	Known RBP	6.7	□□□□□ -1.34
PTPN7-204	ENST00000462815	PDZD11	Q5EBL8	140 aa		6.7	□□□□□ -1.34
PTPN7-204	ENST00000462815	C2orf66	Q6UXQ4	117 aa		6.7	□□□□□ -1.34
PTPN7-204	ENST00000462815	DIRC1	Q969H9	104 aa		6.7	□□□□□ -1.34
PTPN7-204	ENST00000462815	TOMM6	Q96B49	74 aa		6.7	□□□□□ -1.34
PTPN7-204	ENST00000462815	IGIP	A6NJ69	53 aa		6.69	□□□□□ -1.34
PTPN7-204	ENST00000462815	HBD	P02042	147 aa		6.69	□□□□□ -1.34
PTPN7-204	ENST00000462815	G0S2	P27469	103 aa		6.69	□□□□□ -1.34
PTPN7-204	ENST00000462815	HIST3H2BB	Q8N257	126 aa		6.69	□□□□□ -1.34
PTPN7-204	ENST00000462815	C6orf48	Q9UBA6	75 aa		6.69	□□□□□ -1.34
PTPN7-204	ENST00000462815	TMA7	Q9Y2S6	64 aa	Known RBP	6.69	□□□□□ -1.34
PTPN7-204	ENST00000462815	IGLV1-50	A0A075B6I6	118 aa		6.68	□□□□□ -1.34
PTPN7-204	ENST00000462815	IFITM10	A6NMD0	228 aa		6.68	□□□□□ -1.34
PTPN7-204	ENST00000462815		F8WDY8	70 aa		6.68	□□□□□ -1.34
PTPN7-204	ENST00000462815	S100A6	P06703	90 aa		6.68	□□□□□ -1.34
PTPN7-204	ENST00000462815	KIAA0087	Q14695	138 aa		6.68	□□□□□ -1.34
PTPN7-204	ENST00000462815	LINC00173	Q6ZV60	143 aa		6.68	□□□□□ -1.34
PTPN7-204	ENST00000462815	KRTAP9-2	Q9BYQ4	174 aa		6.68	□□□□□ -1.34
PTPN7-204	ENST00000462815	CYSLTR1	Q9Y271	337 aa		6.68	□□□□□ -1.34
PTPN7-204	ENST00000462815	PYGO1	Q9Y3Y4	419 aa		6.68	□□□□□ -1.34
PTPN7-204	ENST00000462815	UNQ6190/PRO20217	Q6UXQ8	127 aa		6.67	□□□□□ -1.34
PTPN7-204	ENST00000462815	ERAS	Q7Z444	233 aa		6.67	□□□□□ -1.34
PTPN7-204	ENST00000462815	ORAOV1	Q8WV07	137 aa		6.67	□□□□□ -1.34
PTPN7-204	ENST00000462815	TMEM18	Q96B42	140 aa		6.67	□□□□□ -1.34
PTPN7-204	ENST00000462815	PACRG	Q96M98	296 aa	Predicted RBP	6.67	□□□□□ -1.34
PTPN7-204	ENST00000462815	MUC17	Q685J3	4493 aa		6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815		A0A087WZ39	114 aa		6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815	LINC01549	A6NIU2	74 aa		6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815	MRPS36	P82909	103 aa	Known RBP	6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815	SMAGP	Q0VAQ4	97 aa		6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815	PRR4	Q16378	134 aa		6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815	FAM19A5	Q7Z5A7	132 aa	Predicted RBP	6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815	SCGB3A1	Q96QR1	104 aa		6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815	TIMM17A	Q99595	171 aa		6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815	SPANXA1	Q9NS26	97 aa		6.66	□□□□□ -1.34
PTPN7-204	ENST00000462815	IGLV4-3	A0A075B6K6	122 aa		6.65	□□□□□ -1.34
PTPN7-204	ENST00000462815	NDUFA1	O15239	70 aa		6.65	□□□□□ -1.34
PTPN7-204	ENST00000462815	LEPROTL1	O95214	131 aa		6.65	□□□□□ -1.34
PTPN7-204	ENST00000462815	NPS	P0C0P6	89 aa		6.65	□□□□□ -1.34
PTPN7-204	ENST00000462815	LCE2A	Q5TA79	106 aa	Predicted RBP	6.65	□□□□□ -1.34
PTPN7-204	ENST00000462815	TMEM141	Q96I45	108 aa		6.65	□□□□□ -1.34
PTPN7-204	ENST00000462815	HIST1H2BL	Q99880	126 aa		6.65	□□□□□ -1.34
PTPN7-204	ENST00000462815	ATP5L	O75964	103 aa		6.64	□□□□□ -1.35
PTPN7-204	ENST00000462815	FABP4	P15090	132 aa		6.64	□□□□□ -1.35
PTPN7-204	ENST00000462815	C9orf129	Q5T035	196 aa	Known RBP	6.64	□□□□□ -1.35
PTPN7-204	ENST00000462815	ZC2HC1B	Q5TFG8	222 aa		6.64	□□□□□ -1.35
PTPN7-204	ENST00000462815	AMELX	Q99217	191 aa		6.64	□□□□□ -1.35
PTPN7-204	ENST00000462815		M0QXV9	152 aa		6.63	□□□□□ -1.35
PTPN7-204	ENST00000462815	IFI27L1	Q96BM0	104 aa		6.63	□□□□□ -1.35
PTPN7-204	ENST00000462815	HSPB8	Q9UJY1	196 aa		6.63	□□□□□ -1.35
PTPN7-204	ENST00000462815	S100A2	P29034	98 aa		6.62	□□□□□ -1.35
PTPN7-204	ENST00000462815	GAGE2E	Q4V326	116 aa		6.62	□□□□□ -1.35
PTPN7-204	ENST00000462815	LINC00242	Q5T6M2	205 aa		6.62	□□□□□ -1.35
PTPN7-204	ENST00000462815	GAGE2D	Q9UEU5	116 aa		6.62	□□□□□ -1.35
PTPN7-204	ENST00000462815		A0A0U1RQV1	116 aa		6.61	□□□□□ -1.35
PTPN7-204	ENST00000462815	C3orf79	P0CE67	100 aa		6.61	□□□□□ -1.35
PTPN7-204	ENST00000462815	C2orf82	Q6UX34	121 aa		6.61	□□□□□ -1.35
PTPN7-204	ENST00000462815	VCX2	Q9H322	139 aa		6.61	□□□□□ -1.35
PTPN7-204	ENST00000462815	CST9L	Q9H4G1	147 aa		6.61	□□□□□ -1.35
PTPN7-204	ENST00000462815	TRAV12-1	A0A0B4J245	112 aa		6.6	□□□□□ -1.35
PTPN7-204	ENST00000462815	TRBV30	A0A0K0K1B3	111 aa		6.6	□□□□□ -1.35
PTPN7-204	ENST00000462815	NDUFC2-KCTD14	E9PQ53	114 aa		6.6	□□□□□ -1.35
PTPN7-204	ENST00000462815	RPL13A	P40429	203 aa	Known RBP	6.6	□□□□□ -1.35
PTPN7-204	ENST00000462815	PMVK	Q15126	192 aa		6.6	□□□□□ -1.35
PTPN7-204	ENST00000462815	PAPPA-AS1	Q5QFB9	102 aa		6.6	□□□□□ -1.35
PTPN7-204	ENST00000462815		Q6ZN92	141 aa		6.6	□□□□□ -1.35
PTPN7-204	ENST00000462815	SYS1-DBNDD2	H3BUS1	97 aa		6.59	□□□□□ -1.35
PTPN7-204	ENST00000462815	ZNF861P	O60384	105 aa		6.59	□□□□□ -1.35
PTPN7-204	ENST00000462815	UBE2D1	P51668	147 aa		6.59	□□□□□ -1.35
PTPN7-204	ENST00000462815	TEX43	Q6ZNM6	134 aa		6.59	□□□□□ -1.35
PTPN7-204	ENST00000462815	FAM19A3	Q7Z5A8	133 aa		6.59	□□□□□ -1.35
PTPN7-204	ENST00000462815	MAP1LC3C	Q9BXW4	147 aa		6.59	□□□□□ -1.35
PTPN7-204	ENST00000462815		A0A087X002	238 aa		6.58	□□□□□ -1.36
PTPN7-204	ENST00000462815	UBE2B	P63146	152 aa		6.58	□□□□□ -1.36
PTPN7-204	ENST00000462815	PET117	Q6UWS5	81 aa		6.58	□□□□□ -1.36
PTPN7-204	ENST00000462815	LOC105371267	A0A1B0GV96	52 aa		6.57	□□□□□ -1.36
PTPN7-204	ENST00000462815	TSPAN13	O95857	204 aa		6.57	□□□□□ -1.36
PTPN7-204	ENST00000462815	KRTDAP	P60985	99 aa		6.57	□□□□□ -1.36
PTPN7-204	ENST00000462815	LINC01545	Q5VT33	79 aa		6.57	□□□□□ -1.36
PTPN7-204	ENST00000462815	LINC01561	Q8N1V8	128 aa		6.57	□□□□□ -1.36
PTPN7-204	ENST00000462815	C2orf88	Q9BSF0	95 aa		6.57	□□□□□ -1.36
PTPN7-204	ENST00000462815		H0Y8G0	127 aa		6.56	□□□□□ -1.36
PTPN7-204	ENST00000462815	IGLC3	P0DOY3	106 aa		6.56	□□□□□ -1.36
PTPN7-204	ENST00000462815	CHTOP	Q9Y3Y2	248 aa	Known RBP	6.56	□□□□□ -1.36
PTPN7-204	ENST00000462815	KRTAP9-6	A0A140TA67	174 aa		6.55	□□□□□ -1.36
PTPN7-204	ENST00000462815	TINCR	A0A1B0GVN0	87 aa		6.55	□□□□□ -1.36
PTPN7-204	ENST00000462815		F8VRH5	84 aa		6.55	□□□□□ -1.36
PTPN7-204	ENST00000462815	PMCHL2	Q9BQD1	86 aa		6.55	□□□□□ -1.36

Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms