RNA–Protein interactions for RNA: ENST00000451893.5

C9orf3-208, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 514 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-208ENST00000451893 PRR34Q9NV39 138 aa14.09□□□□□ -0.15
C9orf3-208ENST00000451893 DMBT1Q9UGM3 2413 aaPredicted RBP14.09□□□□□ -0.15
C9orf3-208ENST00000451893 DLEU1O43261 78 aa14.08□□□□□ -0.16
C9orf3-208ENST00000451893 LINC00242Q5T6M2 205 aa14.08□□□□□ -0.16
C9orf3-208ENST00000451893 SLC25A34Q6PIV7 304 aa14.08□□□□□ -0.16
C9orf3-208ENST00000451893 FAT1Q14517 4588 aa14.08□□□□□ -0.16
C9orf3-208ENST00000451893 VPS13BQ7Z7G8 4022 aa14.08□□□□□ -0.16
C9orf3-208ENST00000451893 TRAV13-1A0A0B4J241 112 aa14.07□□□□□ -0.16
C9orf3-208ENST00000451893 TRAV8-4A0A0B4J246 113 aa14.06□□□□□ -0.16
C9orf3-208ENST00000451893 TMEM223A0PJW6 202 aa14.06□□□□□ -0.16
C9orf3-208ENST00000451893 DDTP30046 118 aa14.06□□□□□ -0.16
C9orf3-208ENST00000451893 SS18Q15532 418 aa14.06□□□□□ -0.16
C9orf3-208ENST00000451893 C14orf144Q96I85 54 aa14.06□□□□□ -0.16
C9orf3-208ENST00000451893 PCP4L1A6NKN8 68 aa14.05□□□□□ -0.16
C9orf3-208ENST00000451893 CIRBP-AS1Q8TBR5 109 aa14.05□□□□□ -0.16
C9orf3-208ENST00000451893 LINC00959A0A1B0GUT2 108 aa14.04□□□□□ -0.16
C9orf3-208ENST00000451893 NMUP48645 174 aa14.04□□□□□ -0.16
C9orf3-208ENST00000451893 BOD1L2Q8IYS8 172 aa14.04□□□□□ -0.16
C9orf3-208ENST00000451893 LINC00469Q8N7U9 141 aa14.04□□□□□ -0.16
C9orf3-208ENST00000451893 IGKV3OR2-268A0A0C4DH90 116 aa14.03□□□□□ -0.16
C9orf3-208ENST00000451893 PLEKHB2Q96CS7 222 aa14.03□□□□□ -0.16
C9orf3-208ENST00000451893 SRRM2Q9UQ35 2752 aaKnown RBP14.02□□□□□ -0.16
C9orf3-208ENST00000451893 LEPROTO15243 131 aa14.02□□□□□ -0.17
C9orf3-208ENST00000451893 IGKV2D-26A0A0A0MRZ7 120 aa14.01□□□□□ -0.17
C9orf3-208ENST00000451893 LINC01561Q8N1V8 128 aa14.01□□□□□ -0.17
C9orf3-208ENST00000451893 CDKN2A-AS1Q9UH64 79 aa14.01□□□□□ -0.17
C9orf3-208ENST00000451893 TRAV16A0A0A6YYK6 109 aaPredicted RBP14□□□□□ -0.17
C9orf3-208ENST00000451893 IGHV1-58A0A0C4DH39 117 aa14□□□□□ -0.17
C9orf3-208ENST00000451893 COX6A2Q02221 97 aa14□□□□□ -0.17
C9orf3-208ENST00000451893 C9orf163Q8N9P6 203 aa13.99□□□□□ -0.17
C9orf3-208ENST00000451893 DPH3Q96FX2 82 aa13.99□□□□□ -0.17
C9orf3-208ENST00000451893 IGHV3OR16-9A0A0B4J2B5 98 aa13.98□□□□□ -0.17
C9orf3-208ENST00000451893 J3QQQ9 107 aa13.98□□□□□ -0.17
C9orf3-208ENST00000451893 HNRNPA3P51991 378 aaKnown RBP13.98□□□□□ -0.17
C9orf3-208ENST00000451893 DNAH8Q96JB1 4490 aa13.98□□□□□ -0.17
C9orf3-208ENST00000451893 CD164L2Q6UWJ8 174 aa13.97□□□□□ -0.17
C9orf3-208ENST00000451893 PCP2Q8IVA1 136 aa13.97□□□□□ -0.17
C9orf3-208ENST00000451893 A0A087WZ39 114 aa13.96□□□□□ -0.17
C9orf3-208ENST00000451893 IGLV5-39A0A0G2JS06 123 aa13.96□□□□□ -0.17
C9orf3-208ENST00000451893 MYMXA0A1B0GTQ4 84 aa13.96□□□□□ -0.17
C9orf3-208ENST00000451893 LGALS3P17931 250 aaKnown RBP13.96□□□□□ -0.17
C9orf3-208ENST00000451893 RPL37AP61513 92 aaKnown RBP13.96□□□□□ -0.17
C9orf3-208ENST00000451893 CFAP161Q6P656 301 aa13.96□□□□□ -0.17
C9orf3-208ENST00000451893 KRTAP26-1Q6PEX3 210 aa13.96□□□□□ -0.17
C9orf3-208ENST00000451893 HIGD1BQ9P298 99 aa13.95□□□□□ -0.18
C9orf3-208ENST00000451893 IGHV3-64A0A075B6Q5 118 aa13.94□□□□□ -0.18
C9orf3-208ENST00000451893 GAGE12HA6NDE8 117 aa13.94□□□□□ -0.18
C9orf3-208ENST00000451893 SPINK8P0C7L1 97 aa13.93□□□□□ -0.18
C9orf3-208ENST00000451893 CHCHD10Q8WYQ3 142 aaPredicted RBP13.93□□□□□ -0.18
C9orf3-208ENST00000451893 SMIM1B2RUZ4 78 aa13.92□□□□□ -0.18
C9orf3-208ENST00000451893 CNBPP62633 177 aaKnown RBP13.92□□□□□ -0.18
C9orf3-208ENST00000451893 MYCBP2O75592 4640 aa13.91□□□□□ -0.18
C9orf3-208ENST00000451893 ZNF815PA8K554 130 aa13.91□□□□□ -0.18
C9orf3-208ENST00000451893 XCL1P47992 114 aa13.91□□□□□ -0.18
C9orf3-208ENST00000451893 HERC1Q15751 4861 aa13.91□□□□□ -0.18
C9orf3-208ENST00000451893 KRTAP29-1A8MX34 341 aaPredicted RBP13.9□□□□□ -0.18
C9orf3-208ENST00000451893 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP13.9□□□□□ -0.18
C9orf3-208ENST00000451893 LINC00587B1AMM8 73 aa13.89□□□□□ -0.19
C9orf3-208ENST00000451893 COX7A2LO14548 114 aa13.89□□□□□ -0.19
C9orf3-208ENST00000451893 C2orf91Q6ZV80 131 aa13.89□□□□□ -0.19
C9orf3-208ENST00000451893 TSPEAR-AS2P59090 65 aa13.88□□□□□ -0.19
C9orf3-208ENST00000451893 CTAG1AP78358 180 aa13.88□□□□□ -0.19
C9orf3-208ENST00000451893 HIGD2BQ4VC39 106 aa13.88□□□□□ -0.19
C9orf3-208ENST00000451893 SFTA2Q6UW10 78 aa13.88□□□□□ -0.19
C9orf3-208ENST00000451893 SDIM1Q6ZPB5 146 aa13.88□□□□□ -0.19
C9orf3-208ENST00000451893 C5orf38Q86SI9 138 aa13.87□□□□□ -0.19
C9orf3-208ENST00000451893 TTTY13Q9BZ97 58 aa13.87□□□□□ -0.19
C9orf3-208ENST00000451893 NDUFA12Q9UI09 145 aa13.87□□□□□ -0.19
C9orf3-208ENST00000451893 APOMO95445 188 aa13.86□□□□□ -0.19
C9orf3-208ENST00000451893 FOXI1Q12951 378 aa13.86□□□□□ -0.19
C9orf3-208ENST00000451893 SCGB1D4Q6XE38 83 aa13.86□□□□□ -0.19
C9orf3-208ENST00000451893 NDUFA1O15239 70 aa13.85□□□□□ -0.19
C9orf3-208ENST00000451893 TAL2Q16559 108 aa13.85□□□□□ -0.19
C9orf3-208ENST00000451893 MALP21145 153 aa13.84□□□□□ -0.19
C9orf3-208ENST00000451893 HERV-K104P63124 156 aa13.84□□□□□ -0.19
C9orf3-208ENST00000451893 C15orf56Q8N910 161 aa13.84□□□□□ -0.19
C9orf3-208ENST00000451893 COX7B2Q8TF08 81 aa13.84□□□□□ -0.19
C9orf3-208ENST00000451893 PANO1I0J062 215 aa13.83□□□□□ -0.2
C9orf3-208ENST00000451893 M0R143 59 aa13.83□□□□□ -0.2
C9orf3-208ENST00000451893 OXTP01178 125 aa13.83□□□□□ -0.2
C9orf3-208ENST00000451893 HSD52Q0P140 79 aa13.83□□□□□ -0.2
C9orf3-208ENST00000451893 CHTF8P0CG12 524 aa13.82□□□□□ -0.2
C9orf3-208ENST00000451893 Q8IZM0 81 aa13.82□□□□□ -0.2
C9orf3-208ENST00000451893 KRTAP10-4P60372 401 aaPredicted RBP13.81□□□□□ -0.2
C9orf3-208ENST00000451893 TP73-AS1Q9UF72 201 aa13.81□□□□□ -0.2
C9orf3-208ENST00000451893 TIMM17BO60830 172 aa13.8□□□□□ -0.2
C9orf3-208ENST00000451893 SLPIP03973 132 aa13.8□□□□□ -0.2
C9orf3-208ENST00000451893 PRSS2P07478 247 aa13.8□□□□□ -0.2
C9orf3-208ENST00000451893 SPANXB1Q9NS25 103 aaPredicted RBP13.8□□□□□ -0.2
C9orf3-208ENST00000451893 PKIGQ9Y2B9 76 aa13.8□□□□□ -0.2
C9orf3-208ENST00000451893 A0A087WYN8 130 aa13.79□□□□□ -0.2
C9orf3-208ENST00000451893 IGKV2-24A0A0C4DH68 120 aa13.79□□□□□ -0.2
C9orf3-208ENST00000451893 A0A0J9YXY3 114 aa13.79□□□□□ -0.2
C9orf3-208ENST00000451893 CXCL5P42830 114 aa13.79□□□□□ -0.2
C9orf3-208ENST00000451893 CIRBPQ14011 172 aaKnown RBP13.79□□□□□ -0.2
C9orf3-208ENST00000451893 C6orf226Q5I0X4 101 aa13.79□□□□□ -0.2
C9orf3-208ENST00000451893 C7orf33Q8WU49 177 aa13.79□□□□□ -0.2
C9orf3-208ENST00000451893 ZNF625Q96I27 306 aaPredicted RBP13.79□□□□□ -0.2
C9orf3-208ENST00000451893 TMEM238C9JI98 176 aa13.78□□□□□ -0.2
C9orf3-208ENST00000451893 LBHQ53QV2 105 aaPredicted RBP13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms