RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 DNAH8Q96JB1 4490 aa11.2□□□□□ -0.62
LIME1-202ENST00000444951 IGLV5-52A0A0A0MRZ9 124 aa11.2□□□□□ -0.62
LIME1-202ENST00000444951 CAMK2N2Q96S95 79 aa11.2□□□□□ -0.62
LIME1-202ENST00000444951 SLPIP03973 132 aa11.19□□□□□ -0.62
LIME1-202ENST00000444951 KIAA0087Q14695 138 aa11.19□□□□□ -0.62
LIME1-202ENST00000444951 C2orf82Q6UX34 121 aa11.19□□□□□ -0.62
LIME1-202ENST00000444951 NTN5Q8WTR8 489 aaPredicted RBP11.19□□□□□ -0.62
LIME1-202ENST00000444951 CKS1BP61024 79 aa11.18□□□□□ -0.62
LIME1-202ENST00000444951 HERVK_113P61574 105 aa11.18□□□□□ -0.62
LIME1-202ENST00000444951 SYCNQ0VAF6 134 aa11.18□□□□□ -0.62
LIME1-202ENST00000444951 LINC01620Q4KN68 170 aa11.18□□□□□ -0.62
LIME1-202ENST00000444951 Q8IZM0 81 aa11.18□□□□□ -0.62
LIME1-202ENST00000444951 STPG4Q8N801 248 aa11.18□□□□□ -0.62
LIME1-202ENST00000444951 IGLV5-39A0A0G2JS06 123 aa11.17□□□□□ -0.62
LIME1-202ENST00000444951 C2orf48Q96LS8 159 aa11.17□□□□□ -0.62
LIME1-202ENST00000444951 CARD19Q96LW7 228 aa11.17□□□□□ -0.62
LIME1-202ENST00000444951 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.16□□□□□ -0.62
LIME1-202ENST00000444951 NDUFA1O15239 70 aa11.16□□□□□ -0.62
LIME1-202ENST00000444951 UNQ6190/PRO20217Q6UXQ8 127 aa11.16□□□□□ -0.62
LIME1-202ENST00000444951 Q6ZRU5 148 aa11.16□□□□□ -0.62
LIME1-202ENST00000444951 PGPEP1Q9NXJ5 209 aa11.16□□□□□ -0.62
LIME1-202ENST00000444951 AKR1D1P51857 326 aa11.15□□□□□ -0.62
LIME1-202ENST00000444951 CNBPP62633 177 aaKnown RBP11.15□□□□□ -0.62
LIME1-202ENST00000444951 C10orf25Q5T742 122 aa11.15□□□□□ -0.62
LIME1-202ENST00000444951 MYCBP2O75592 4640 aa11.14□□□□□ -0.63
LIME1-202ENST00000444951 LEPROTO15243 131 aa11.13□□□□□ -0.63
LIME1-202ENST00000444951 XGP55808 180 aa11.13□□□□□ -0.63
LIME1-202ENST00000444951 MAJINQ3KP22 176 aa11.13□□□□□ -0.63
LIME1-202ENST00000444951 TSPEAR-AS2P59090 65 aa11.12□□□□□ -0.63
LIME1-202ENST00000444951 KRTAP10-1P60331 282 aa11.12□□□□□ -0.63
LIME1-202ENST00000444951 CDPF1Q6NVV7 123 aa11.12□□□□□ -0.63
LIME1-202ENST00000444951 PLEKHB2Q96CS7 222 aa11.12□□□□□ -0.63
LIME1-202ENST00000444951 GCSHP23434 173 aa11.11□□□□□ -0.63
LIME1-202ENST00000444951 CXCL5P42830 114 aa11.11□□□□□ -0.63
LIME1-202ENST00000444951 C9orf116Q5BN46 136 aaPredicted RBP11.11□□□□□ -0.63
LIME1-202ENST00000444951 C9orf163Q8N9P6 203 aa11.11□□□□□ -0.63
LIME1-202ENST00000444951 ZNF625Q96I27 306 aaPredicted RBP11.11□□□□□ -0.63
LIME1-202ENST00000444951 C6orf48Q9UBA6 75 aa11.11□□□□□ -0.63
LIME1-202ENST00000444951 E9PLD3 99 aa11.1□□□□□ -0.63
LIME1-202ENST00000444951 F8WDY8 70 aa11.1□□□□□ -0.63
LIME1-202ENST00000444951 J3QQQ9 107 aa11.1□□□□□ -0.63
LIME1-202ENST00000444951 LGALS3P17931 250 aaKnown RBP11.1□□□□□ -0.63
LIME1-202ENST00000444951 JOSD1Q15040 202 aaPredicted RBP11.1□□□□□ -0.63
LIME1-202ENST00000444951 ANKRD39Q53RE8 183 aa11.1□□□□□ -0.63
LIME1-202ENST00000444951 EPM2AB3EWF7 344 aa11.09□□□□□ -0.63
LIME1-202ENST00000444951 HSBP1L1C9JCN9 74 aa11.09□□□□□ -0.63
LIME1-202ENST00000444951 NDUFA12Q9UI09 145 aa11.09□□□□□ -0.63
LIME1-202ENST00000444951 IGKV2D-26A0A0A0MRZ7 120 aa11.08□□□□□ -0.64
LIME1-202ENST00000444951 NMUP48645 174 aa11.08□□□□□ -0.64
LIME1-202ENST00000444951 TRBV30A0A0K0K1B3 111 aa11.07□□□□□ -0.64
LIME1-202ENST00000444951 RPL18AQ02543 176 aaKnown RBP11.07□□□□□ -0.64
LIME1-202ENST00000444951 HAMPP81172 84 aa11.06□□□□□ -0.64
LIME1-202ENST00000444951 RNF151Q2KHN1 245 aa11.06□□□□□ -0.64
LIME1-202ENST00000444951 PYY3Q5JQD4 70 aa11.06□□□□□ -0.64
LIME1-202ENST00000444951 TTTY13Q9BZ97 58 aa11.06□□□□□ -0.64
LIME1-202ENST00000444951 MYMXA0A1B0GTQ4 84 aa11.05□□□□□ -0.64
LIME1-202ENST00000444951 PFN2P35080 140 aa11.05□□□□□ -0.64
LIME1-202ENST00000444951 GAGE2BQ13066 116 aa11.05□□□□□ -0.64
LIME1-202ENST00000444951 FLG2Q5D862 2391 aaPredicted RBP11.04□□□□□ -0.64
LIME1-202ENST00000444951 DMBT1Q9UGM3 2413 aaPredicted RBP11.04□□□□□ -0.64
LIME1-202ENST00000444951 IGKV2-24A0A0C4DH68 120 aa11.04□□□□□ -0.64
LIME1-202ENST00000444951 LOC107984640A0A0U1RRK4 108 aa11.04□□□□□ -0.64
LIME1-202ENST00000444951 Q5VSD8 79 aa11.04□□□□□ -0.64
LIME1-202ENST00000444951 SDIM1Q6ZPB5 146 aa11.04□□□□□ -0.64
LIME1-202ENST00000444951 A0A0U1RRA0 63 aa11.03□□□□□ -0.64
LIME1-202ENST00000444951 CHTF8P0CG12 524 aa11.03□□□□□ -0.64
LIME1-202ENST00000444951 INAFM2P0DMQ5 153 aa11.03□□□□□ -0.64
LIME1-202ENST00000444951 GAGE2EQ4V326 116 aa11.03□□□□□ -0.64
LIME1-202ENST00000444951 MEIG1Q5JSS6 88 aa11.03□□□□□ -0.64
LIME1-202ENST00000444951 SFTA2Q6UW10 78 aa11.03□□□□□ -0.64
LIME1-202ENST00000444951 GAGE2DQ9UEU5 116 aa11.03□□□□□ -0.64
LIME1-202ENST00000444951 A0A096LNI7 61 aa11.02□□□□□ -0.65
LIME1-202ENST00000444951 ZNF815PA8K554 130 aa11.02□□□□□ -0.65
LIME1-202ENST00000444951 SMR3BP02814 79 aaPredicted RBP11.02□□□□□ -0.65
LIME1-202ENST00000444951 DPH3Q96FX2 82 aa11.02□□□□□ -0.65
LIME1-202ENST00000444951 VAMP8Q9BV40 100 aa11.02□□□□□ -0.65
LIME1-202ENST00000444951 ERG28Q9UKR5 140 aa11.02□□□□□ -0.65
LIME1-202ENST00000444951 PAM16Q9Y3D7 125 aa11.02□□□□□ -0.65
LIME1-202ENST00000444951 LOC105371267A0A1B0GV96 52 aa11.01□□□□□ -0.65
LIME1-202ENST00000444951 LINC00158P58513 81 aa11.01□□□□□ -0.65
LIME1-202ENST00000444951 HERV-K104P63124 156 aa11.01□□□□□ -0.65
LIME1-202ENST00000444951 PCP2Q8IVA1 136 aa11.01□□□□□ -0.65
LIME1-202ENST00000444951 SRRM2Q9UQ35 2752 aaKnown RBP11.01□□□□□ -0.65
LIME1-202ENST00000444951 NDUFC2-KCTD14E9PQ53 114 aa11□□□□□ -0.65
LIME1-202ENST00000444951 Q6ZRP5 223 aa11□□□□□ -0.65
LIME1-202ENST00000444951 PKIGQ9Y2B9 76 aa11□□□□□ -0.65
LIME1-202ENST00000444951 PANO1I0J062 215 aa10.99□□□□□ -0.65
LIME1-202ENST00000444951 SMIM13P0DJ93 91 aa10.99□□□□□ -0.65
LIME1-202ENST00000444951 SPATA45Q537H7 98 aa10.99□□□□□ -0.65
LIME1-202ENST00000444951 FAM30AQ9NZY2 134 aa10.99□□□□□ -0.65
LIME1-202ENST00000444951 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.99□□□□□ -0.65
LIME1-202ENST00000444951 TLX1NBP0CAT3 122 aa10.98□□□□□ -0.65
LIME1-202ENST00000444951 PTTG1IPP53801 180 aa10.98□□□□□ -0.65
LIME1-202ENST00000444951 A0A0J9YXY3 114 aa10.97□□□□□ -0.65
LIME1-202ENST00000444951 XAGE1AQ9HD64 81 aa10.97□□□□□ -0.65
LIME1-202ENST00000444951 SCGB1D4Q6XE38 83 aa10.96□□□□□ -0.65
LIME1-202ENST00000444951 COX17Q14061 63 aa10.95□□□□□ -0.66
LIME1-202ENST00000444951 DAND5Q8N907 189 aa10.95□□□□□ -0.66
LIME1-202ENST00000444951 TP73-AS1Q9UF72 201 aa10.95□□□□□ -0.66
LIME1-202ENST00000444951 LINC00587B1AMM8 73 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 68.5 ms