RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 NXT2Q9NPJ8 142 aaKnown RBP4.81□□□□□ -1.64
CD44-211ENST00000442151 PSORS1C2Q9UIG4 136 aa4.81□□□□□ -1.64
CD44-211ENST00000442151 PKHD1L1Q86WI1 4243 aa4.81□□□□□ -1.64
CD44-211ENST00000442151 LRP1Q07954 4544 aaKnown RBP4.81□□□□□ -1.64
CD44-211ENST00000442151 ATP6V1G1O75348 118 aa4.81□□□□□ -1.64
CD44-211ENST00000442151 LBHQ53QV2 105 aaPredicted RBP4.81□□□□□ -1.64
CD44-211ENST00000442151 C6orf226Q5I0X4 101 aa4.81□□□□□ -1.64
CD44-211ENST00000442151 OPRPNQ99935 248 aaPredicted RBP4.81□□□□□ -1.64
CD44-211ENST00000442151 CTDSP1Q9GZU7 261 aa4.81□□□□□ -1.64
CD44-211ENST00000442151 LOC389332A0A1B0GUA5 103 aa4.8□□□□□ -1.64
CD44-211ENST00000442151 KRTAP5-6Q6L8G9 129 aaPredicted RBP4.8□□□□□ -1.64
CD44-211ENST00000442151 FAT3Q8TDW7 4589 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 IGLV4-3A0A075B6K6 122 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 TRAV9-1A0A075B6T8 112 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 IGLV7-43P04211 117 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 HERVK_113P63121 156 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 UBE2BP63146 152 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 SRSF3P84103 164 aaKnown RBP4.79□□□□□ -1.64
CD44-211ENST00000442151 COX19Q49B96 90 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 UNQ6190/PRO20217Q6UXQ8 127 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 GEMIN7Q9H840 131 aaKnown RBP4.79□□□□□ -1.64
CD44-211ENST00000442151 NDUFC2-KCTD14E9PQ53 114 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 S100A1P23297 94 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 CXCL5P42830 114 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 UBE2D1P51668 147 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 GAGE2EQ4V326 116 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 LINC00242Q5T6M2 205 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 C2orf66Q6UXQ4 117 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 PHF5AQ7RTV0 110 aaKnown RBP4.79□□□□□ -1.64
CD44-211ENST00000442151 GAGE2DQ9UEU5 116 aa4.79□□□□□ -1.64
CD44-211ENST00000442151 IGLV1-50A0A075B6I6 118 aa4.78□□□□□ -1.64
CD44-211ENST00000442151 NUPR1O60356 82 aa4.78□□□□□ -1.64
CD44-211ENST00000442151 S100PP25815 95 aa4.78□□□□□ -1.64
CD44-211ENST00000442151 ALKBH7Q9BT30 221 aaPredicted RBP4.78□□□□□ -1.64
CD44-211ENST00000442151 C6orf48Q9UBA6 75 aa4.78□□□□□ -1.64
CD44-211ENST00000442151 RPL13AP40429 203 aaKnown RBP4.77□□□□□ -1.65
CD44-211ENST00000442151 IFITM2Q01629 132 aa4.77□□□□□ -1.65
CD44-211ENST00000442151 UQCC3Q6UW78 93 aa4.77□□□□□ -1.65
CD44-211ENST00000442151 FAM19A3Q7Z5A8 133 aa4.77□□□□□ -1.65
CD44-211ENST00000442151 Q8IZM0 81 aa4.77□□□□□ -1.65
CD44-211ENST00000442151 AMELXQ99217 191 aa4.77□□□□□ -1.65
CD44-211ENST00000442151 TIMM17AQ99595 171 aa4.77□□□□□ -1.65
CD44-211ENST00000442151 M0QXV9 152 aa4.76□□□□□ -1.65
CD44-211ENST00000442151 KIAA0087Q14695 138 aa4.76□□□□□ -1.65
CD44-211ENST00000442151 FAM19A5Q7Z5A7 132 aaPredicted RBP4.76□□□□□ -1.65
CD44-211ENST00000442151 TOMM7Q9P0U1 55 aa4.76□□□□□ -1.65
CD44-211ENST00000442151 CARHSP1Q9Y2V2 147 aaKnown RBP4.76□□□□□ -1.65
CD44-211ENST00000442151 H0Y9J4 135 aa4.76□□□□□ -1.65
CD44-211ENST00000442151 ERASQ7Z444 233 aa4.76□□□□□ -1.65
CD44-211ENST00000442151 FAM104AQ969W3 186 aa4.76□□□□□ -1.65
CD44-211ENST00000442151 IGIPA6NJ69 53 aa4.75□□□□□ -1.65
CD44-211ENST00000442151 CLLU1Q5K131 121 aa4.75□□□□□ -1.65
CD44-211ENST00000442151 C10orf25Q5T742 122 aa4.75□□□□□ -1.65
CD44-211ENST00000442151 TOMM6Q96B49 74 aa4.75□□□□□ -1.65
CD44-211ENST00000442151 SCGB3A1Q96QR1 104 aa4.75□□□□□ -1.65
CD44-211ENST00000442151 TP73-AS1Q9UF72 201 aa4.75□□□□□ -1.65
CD44-211ENST00000442151 F8VRH5 84 aa4.74□□□□□ -1.65
CD44-211ENST00000442151 PDZD11Q5EBL8 140 aa4.74□□□□□ -1.65
CD44-211ENST00000442151 H3BRM9 83 aa4.74□□□□□ -1.65
CD44-211ENST00000442151 GNB1LQ9BYB4 327 aa4.74□□□□□ -1.65
CD44-211ENST00000442151 SMCO4Q9NRQ5 59 aa4.74□□□□□ -1.65
CD44-211ENST00000442151 TINCRA0A1B0GVN0 87 aa4.73□□□□□ -1.65
CD44-211ENST00000442151 ZNF861PO60384 105 aa4.73□□□□□ -1.65
CD44-211ENST00000442151 RPL28P46779 137 aaKnown RBP4.73□□□□□ -1.65
CD44-211ENST00000442151 C2orf82Q6UX34 121 aa4.73□□□□□ -1.65
CD44-211ENST00000442151 FA2HQ7L5A8 372 aa4.73□□□□□ -1.65
CD44-211ENST00000442151 FAM168BA1KXE4 195 aa4.72□□□□□ -1.65
CD44-211ENST00000442151 GAGE10A6NGK3 116 aa4.72□□□□□ -1.65
CD44-211ENST00000442151 LINC00469Q8N7U9 141 aa4.72□□□□□ -1.65
CD44-211ENST00000442151 C22orf24Q9Y442 160 aa4.72□□□□□ -1.65
CD44-211ENST00000442151 TMEM218A2RU14 115 aa4.72□□□□□ -1.65
CD44-211ENST00000442151 LINC00173Q6ZV60 143 aa4.72□□□□□ -1.65
CD44-211ENST00000442151 COX7B2Q8TF08 81 aa4.72□□□□□ -1.65
CD44-211ENST00000442151 SEC11CQ9BY50 192 aa4.72□□□□□ -1.65
CD44-211ENST00000442151 CDKN2A-AS1Q9UH64 79 aa4.72□□□□□ -1.65
CD44-211ENST00000442151 RNF213Q63HN8 5207 aa4.71□□□□□ -1.66
CD44-211ENST00000442151 PMVKQ15126 192 aa4.71□□□□□ -1.66
CD44-211ENST00000442151 C9orf129Q5T035 196 aaKnown RBP4.71□□□□□ -1.66
CD44-211ENST00000442151 SFTA2Q6UW10 78 aa4.71□□□□□ -1.66
CD44-211ENST00000442151 PRR26Q8N8Z3 221 aa4.71□□□□□ -1.66
CD44-211ENST00000442151 ATP5LO75964 103 aa4.7□□□□□ -1.66
CD44-211ENST00000442151 RAB5BP61020 215 aa4.7□□□□□ -1.66
CD44-211ENST00000442151 MRPL55Q7Z7F7 128 aaKnown RBP4.7□□□□□ -1.66
CD44-211ENST00000442151 NKAPP1Q8N9T2 125 aa4.7□□□□□ -1.66
CD44-211ENST00000442151 LINC01546A6NGU7 62 aa4.69□□□□□ -1.66
CD44-211ENST00000442151 BCE1O60756 84 aa4.69□□□□□ -1.66
CD44-211ENST00000442151 FABP9Q0Z7S8 132 aa4.69□□□□□ -1.66
CD44-211ENST00000442151 KIAA1644Q3SXP7 199 aa4.69□□□□□ -1.66
CD44-211ENST00000442151 ZC2HC1BQ5TFG8 222 aa4.69□□□□□ -1.66
CD44-211ENST00000442151 SLC7A5P1Q8MH63 180 aa4.69□□□□□ -1.66
CD44-211ENST00000442151 CST9LQ9H4G1 147 aa4.69□□□□□ -1.66
CD44-211ENST00000442151 IGLV5-45A0A087WSX0 123 aa4.69□□□□□ -1.66
CD44-211ENST00000442151 RPL24P83731 157 aaKnown RBP4.69□□□□□ -1.66
CD44-211ENST00000442151 XAGE1AQ9HD64 81 aa4.69□□□□□ -1.66
CD44-211ENST00000442151 CRYGAP11844 174 aa4.68□□□□□ -1.66
CD44-211ENST00000442151 CTAG1AP78358 180 aa4.68□□□□□ -1.66
CD44-211ENST00000442151 COX17Q14061 63 aa4.68□□□□□ -1.66
CD44-211ENST00000442151 RHEBQ15382 184 aa4.68□□□□□ -1.66
CD44-211ENST00000442151 PET117Q6UWS5 81 aa4.68□□□□□ -1.66
CD44-211ENST00000442151 IGLV5-37A0A075B6J1 123 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms