RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 S100A5P33763 92 aa0.54□□□□□ -2.32
VPS41-207ENST00000439468 C10orf128Q5T292 105 aa0.54□□□□□ -2.32
VPS41-207ENST00000439468 KRTAP8-1Q8IUC2 63 aa0.54□□□□□ -2.32
VPS41-207ENST00000439468 FKBP11Q9NYL4 201 aa0.54□□□□□ -2.32
VPS41-207ENST00000439468 PLAC8Q9NZF1 115 aa0.54□□□□□ -2.32
VPS41-207ENST00000439468 SYNE1Q8NF91 8797 aaKnown RBP0.53□□□□□ -2.32
VPS41-207ENST00000439468 C3orf85A0A1B0GTC6 90 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 NDUFA3O95167 84 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 BCL2P10415 239 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 SDC2P34741 201 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 UNQ5815/PRO19632Q6UWF5 114 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 HEPN1Q6WQI6 88 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 LEAP2Q969E1 77 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 PRELID3AQ96N28 172 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 SDF2Q99470 211 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 LPAR5Q9H1C0 372 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 LAMTOR3Q9UHA4 124 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 LINC00312Q9Y6C7 94 aa0.53□□□□□ -2.32
VPS41-207ENST00000439468 A0A0D9SG42 100 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 TRBV30A0A0K0K1B3 111 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 ZNF727A8MUV8 499 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 H3BNG1 76 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 H3BUA1 57 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 K7EP13 123 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 IGHV3-33P01772 117 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 HMGN2P05204 90 aaKnown RBP0.52□□□□□ -2.33
VPS41-207ENST00000439468 DEFB130BP0DP73 79 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 DEFB130AP0DP74 79 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 EDDM3BP56851 147 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 DEFB131AP59861 70 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 MRPS36P82909 103 aaKnown RBP0.52□□□□□ -2.33
VPS41-207ENST00000439468 TDRG1Q3Y452 100 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 CASC2Q6XLA1 102 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 C3orf62Q6ZUJ4 267 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 MMGT1Q8N4V1 131 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 GRPEL2Q8TAA5 225 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 TRAPPC2LQ9UL33 140 aa0.52□□□□□ -2.33
VPS41-207ENST00000439468 APOC4-APOC2K7ER74 178 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 APOC2P02655 101 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 NEFHP12036 1026 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 RPL7P18124 248 aaKnown RBP0.51□□□□□ -2.33
VPS41-207ENST00000439468 GLYATL3Q5SZD4 288 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 LYPD5Q6UWN5 251 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 Q6ZQY7 126 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 LINC00305Q7Z4B0 112 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 OR5AK2Q8NH90 309 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 USMG5Q96IX5 58 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 CCDC32Q9BV29 185 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 C10orf95Q9H7T3 257 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 SMPXQ9UHP9 88 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 ATPIF1Q9UII2 106 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 HSPB8Q9UJY1 196 aa0.51□□□□□ -2.33
VPS41-207ENST00000439468 NOP16Q9Y3C1 178 aaKnown RBP0.51□□□□□ -2.33
VPS41-207ENST00000439468 TRAV36DV7A0A075B6V5 113 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 LOC107984156A0A0G2JMH3 177 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 PITX3O75364 302 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 TRACP01848 142 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 PRH1P02810 166 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 APELAP0DMC3 54 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 PDE6GP18545 87 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 EVI2AP22794 236 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 ZNF137PP52743 207 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 PCBD1P61457 104 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 LINC01556Q5JQF7 62 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 LINC00299Q6ZSB3 139 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 ARL17AQ8IVW1 177 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 THEM6Q8WUY1 208 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 MED31Q9Y3C7 131 aa0.5□□□□□ -2.33
VPS41-207ENST00000439468 LOC107984640A0A0U1RRK4 108 aa0.49□□□□□ -2.33
VPS41-207ENST00000439468 A0A1B0GV72 72 aa0.49□□□□□ -2.33
VPS41-207ENST00000439468 PHGR1C9JFL3 82 aa0.49□□□□□ -2.33
VPS41-207ENST00000439468 UBE2D1P51668 147 aa0.49□□□□□ -2.33
VPS41-207ENST00000439468 FOXA3P55318 350 aaPredicted RBP0.49□□□□□ -2.33
VPS41-207ENST00000439468 NDUFA6P56556 154 aa0.49□□□□□ -2.33
VPS41-207ENST00000439468 RBM3P98179 157 aaKnown RBP0.49□□□□□ -2.33
VPS41-207ENST00000439468 SMIM21Q3B7S5 101 aa0.49□□□□□ -2.33
VPS41-207ENST00000439468 CSAG1Q6PB30 78 aa0.49□□□□□ -2.33
VPS41-207ENST00000439468 C5orf17Q8NAS9 161 aa0.49□□□□□ -2.33
VPS41-207ENST00000439468 LAMTOR2Q9Y2Q5 125 aa0.49□□□□□ -2.33
VPS41-207ENST00000439468 TRAV13-1A0A0B4J241 112 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 TRBV27A0A0K0K1C4 114 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 GNG14A0A1W2PPG7 69 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 FAM223BA6NKX1 122 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 PGRMC1O00264 195 aaKnown RBP0.48□□□□□ -2.33
VPS41-207ENST00000439468 TSPAN19P0C672 248 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 TPT1P13693 172 aaKnown RBP0.48□□□□□ -2.33
VPS41-207ENST00000439468 DEFB1P60022 68 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 SPINK9Q5DT21 86 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 SPATA8Q6RVD6 105 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 RPS27LQ71UM5 84 aaKnown RBP0.48□□□□□ -2.33
VPS41-207ENST00000439468 FAM223AQ8IWN6 122 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 SLC35B3Q9H1N7 401 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 COA4Q9NYJ1 87 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 V9GYQ6 96 aa0.48□□□□□ -2.33
VPS41-207ENST00000439468 TRAV2A0A0B4J234 112 aa0.47□□□□□ -2.33
VPS41-207ENST00000439468 A0A1B0GWA3 101 aa0.47□□□□□ -2.33
VPS41-207ENST00000439468 M0R135 149 aa0.47□□□□□ -2.33
VPS41-207ENST00000439468 IGHV3-30P01768 117 aa0.47□□□□□ -2.33
VPS41-207ENST00000439468 IGHV3-30-5P0DP03 117 aa0.47□□□□□ -2.33
VPS41-207ENST00000439468 HLA-DRB4P13762 266 aa0.47□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 227.8 ms