RNA–Protein interactions for RNA: ENST00000436336.6

CPSF4-204, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene CPSF4, Length 1,738 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-204ENST00000436336 DNAH2Q9P225 4427 aa15.14■□□□□ 0.01
CPSF4-204ENST00000436336 LINC00526Q96FQ7 95 aa15.14■□□□□ 0.01
CPSF4-204ENST00000436336 TP73-AS1Q9UF72 201 aa15.14■□□□□ 0.01
CPSF4-204ENST00000436336 LECT2O14960 151 aa15.13■□□□□ 0.01
CPSF4-204ENST00000436336 HERV-K104P63124 156 aa15.13■□□□□ 0.01
CPSF4-204ENST00000436336 C2orf48Q96LS8 159 aa15.13■□□□□ 0.01
CPSF4-204ENST00000436336 C2orf82Q6UX34 121 aa15.12■□□□□ 0.01
CPSF4-204ENST00000436336 MIEN1Q9BRT3 115 aa15.12■□□□□ 0.01
CPSF4-204ENST00000436336 F8WDY8 70 aa15.12■□□□□ 0.01
CPSF4-204ENST00000436336 WFDC2Q14508 124 aa15.12■□□□□ 0.01
CPSF4-204ENST00000436336 LRCOL1A6NCL2 159 aa15.11■□□□□ 0.01
CPSF4-204ENST00000436336 C14orf177Q52M58 125 aa15.11■□□□□ 0.01
CPSF4-204ENST00000436336 SCGB1D4Q6XE38 83 aa15.11■□□□□ 0.01
CPSF4-204ENST00000436336 A0A0J9YXY3 114 aa15.09■□□□□ 0.01
CPSF4-204ENST00000436336 CAMK2N2Q96S95 79 aa15.09■□□□□ 0.01
CPSF4-204ENST00000436336 UNQ6190/PRO20217Q6UXQ8 127 aa15.07■□□□□ 0
CPSF4-204ENST00000436336 C2orf91Q6ZV80 131 aa15.06■□□□□ 0
CPSF4-204ENST00000436336 C10orf25Q5T742 122 aa15.06■□□□□ 0
CPSF4-204ENST00000436336 HIGD1BQ9P298 99 aa15.06■□□□□ 0
CPSF4-204ENST00000436336 MEIG1Q5JSS6 88 aa15.05■□□□□ -0
CPSF4-204ENST00000436336 A0A087WTM6 91 aa15.04■□□□□ -0
CPSF4-204ENST00000436336 HNRNPA3P51991 378 aaKnown RBP15.04■□□□□ -0
CPSF4-204ENST00000436336 SYCNQ0VAF6 134 aa15.04■□□□□ -0
CPSF4-204ENST00000436336 Q6ZRU5 148 aa15.04■□□□□ -0
CPSF4-204ENST00000436336 DNAH17Q9UFH2 4485 aa15.04■□□□□ -0
CPSF4-204ENST00000436336 TRBV30A0A0K0K1B3 111 aa15.03■□□□□ -0
CPSF4-204ENST00000436336 LINC00587B1AMM8 73 aa15.03■□□□□ -0
CPSF4-204ENST00000436336 TIMM17BO60830 172 aa15.03■□□□□ -0
CPSF4-204ENST00000436336 CIRBPQ14011 172 aaKnown RBP15.03■□□□□ -0
CPSF4-204ENST00000436336 C6orf48Q9UBA6 75 aa15.03■□□□□ -0
CPSF4-204ENST00000436336 ERG28Q9UKR5 140 aa15.03■□□□□ -0
CPSF4-204ENST00000436336 RTL8CO15255 209 aa15.02□□□□□ -0.01
CPSF4-204ENST00000436336 SLPIP03973 132 aa15.02□□□□□ -0.01
CPSF4-204ENST00000436336 Q8N814 137 aa15.01□□□□□ -0.01
CPSF4-204ENST00000436336 CARD19Q96LW7 228 aa15.01□□□□□ -0.01
CPSF4-204ENST00000436336 TMEM238C9JI98 176 aa15□□□□□ -0.01
CPSF4-204ENST00000436336 DDTP30046 118 aa15□□□□□ -0.01
CPSF4-204ENST00000436336 SMIM13P0DJ93 91 aa15□□□□□ -0.01
CPSF4-204ENST00000436336 COX17Q14061 63 aa15□□□□□ -0.01
CPSF4-204ENST00000436336 LITAFQ99732 161 aa15□□□□□ -0.01
CPSF4-204ENST00000436336 CNBPP62633 177 aaKnown RBP14.99□□□□□ -0.01
CPSF4-204ENST00000436336 C9orf116Q5BN46 136 aaPredicted RBP14.99□□□□□ -0.01
CPSF4-204ENST00000436336 SPANXB1Q9NS25 103 aaPredicted RBP14.99□□□□□ -0.01
CPSF4-204ENST00000436336 RNF151Q2KHN1 245 aa14.98□□□□□ -0.01
CPSF4-204ENST00000436336 FRAS1Q86XX4 4008 aa14.98□□□□□ -0.01
CPSF4-204ENST00000436336 IGLV2-33A0A075B6J2 118 aaPredicted RBP14.97□□□□□ -0.01
CPSF4-204ENST00000436336 TRAV16A0A0A6YYK6 109 aaPredicted RBP14.97□□□□□ -0.01
CPSF4-204ENST00000436336 PFN2P35080 140 aa14.97□□□□□ -0.01
CPSF4-204ENST00000436336 A0A0U1RRA0 63 aa14.97□□□□□ -0.01
CPSF4-204ENST00000436336 LINC00158P58513 81 aa14.97□□□□□ -0.01
CPSF4-204ENST00000436336 TNP2Q05952 138 aa14.97□□□□□ -0.01
CPSF4-204ENST00000436336 ADAMTSL4-AS1Q5T5F5 129 aa14.97□□□□□ -0.01
CPSF4-204ENST00000436336 PCP4L1A6NKN8 68 aa14.95□□□□□ -0.02
CPSF4-204ENST00000436336 EREGO14944 169 aa14.95□□□□□ -0.02
CPSF4-204ENST00000436336 SPANXDQ9BXN6 97 aa14.95□□□□□ -0.02
CPSF4-204ENST00000436336 SPANXCQ9NY87 97 aa14.95□□□□□ -0.02
CPSF4-204ENST00000436336 KMT2CQ8NEZ4 4911 aaKnown RBP14.95□□□□□ -0.02
CPSF4-204ENST00000436336 RYR2Q92736 4967 aa14.95□□□□□ -0.02
CPSF4-204ENST00000436336 SRSF9Q13242 221 aaKnown RBP eCLIP14.95□□□□□ -0.02
CPSF4-204ENST00000436336 Q6ZVH6 145 aa14.95□□□□□ -0.02
CPSF4-204ENST00000436336 TAL2Q16559 108 aa14.93□□□□□ -0.02
CPSF4-204ENST00000436336 HIST1H4GQ99525 98 aa14.93□□□□□ -0.02
CPSF4-204ENST00000436336 CTAG1AP78358 180 aa14.92□□□□□ -0.02
CPSF4-204ENST00000436336 MIR7-3HGQ8N6C7 128 aa14.92□□□□□ -0.02
CPSF4-204ENST00000436336 DAND5Q8N907 189 aa14.92□□□□□ -0.02
CPSF4-204ENST00000436336 HSD52Q0P140 79 aa14.92□□□□□ -0.02
CPSF4-204ENST00000436336 NDUFC2-KCTD14E9PQ53 114 aa14.91□□□□□ -0.02
CPSF4-204ENST00000436336 TLX1NBP0CAT3 122 aa14.91□□□□□ -0.02
CPSF4-204ENST00000436336 C9orf163Q8N9P6 203 aa14.89□□□□□ -0.03
CPSF4-204ENST00000436336 IFITM1P13164 125 aa14.88□□□□□ -0.03
CPSF4-204ENST00000436336 PTTG1IPP53801 180 aa14.88□□□□□ -0.03
CPSF4-204ENST00000436336 LINC00336Q6ZUF6 198 aa14.87□□□□□ -0.03
CPSF4-204ENST00000436336 NPC2P61916 151 aa14.86□□□□□ -0.03
CPSF4-204ENST00000436336 MUSTN1Q8IVN3 82 aa14.86□□□□□ -0.03
CPSF4-204ENST00000436336 CEND1Q8N111 149 aa14.86□□□□□ -0.03
CPSF4-204ENST00000436336 LINC00308Q8TCZ7 52 aa14.86□□□□□ -0.03
CPSF4-204ENST00000436336 COPS9Q8WXC6 57 aa14.86□□□□□ -0.03
CPSF4-204ENST00000436336 LOC107984640A0A0U1RRK4 108 aa14.86□□□□□ -0.03
CPSF4-204ENST00000436336 GCSHP23434 173 aa14.86□□□□□ -0.03
CPSF4-204ENST00000436336 Q6ZRP5 223 aa14.86□□□□□ -0.03
CPSF4-204ENST00000436336 FAT2Q9NYQ8 4349 aa14.86□□□□□ -0.03
CPSF4-204ENST00000436336 PPDPFQ9H3Y8 114 aa14.85□□□□□ -0.03
CPSF4-204ENST00000436336 SND1-IT1Q9HBX3 110 aa14.85□□□□□ -0.03
CPSF4-204ENST00000436336 RPL18AQ02543 176 aaKnown RBP14.83□□□□□ -0.03
CPSF4-204ENST00000436336 SOSTDC1Q6X4U4 206 aa14.83□□□□□ -0.03
CPSF4-204ENST00000436336 PKIGQ9Y2B9 76 aa14.83□□□□□ -0.03
CPSF4-204ENST00000436336 LOC107984156A0A0G2JMH3 177 aa14.83□□□□□ -0.04
CPSF4-204ENST00000436336 ARL17AQ8IVW1 177 aa14.83□□□□□ -0.04
CPSF4-204ENST00000436336 GAGE2EQ4V326 116 aa14.82□□□□□ -0.04
CPSF4-204ENST00000436336 GAGE2DQ9UEU5 116 aa14.82□□□□□ -0.04
CPSF4-204ENST00000436336 IGLV5-52A0A0A0MRZ9 124 aa14.81□□□□□ -0.04
CPSF4-204ENST00000436336 M0R143 59 aa14.81□□□□□ -0.04
CPSF4-204ENST00000436336 EIF4EBP3O60516 100 aaPredicted RBP14.81□□□□□ -0.04
CPSF4-204ENST00000436336 RPL24P83731 157 aaKnown RBP14.81□□□□□ -0.04
CPSF4-204ENST00000436336 DNAH11Q96DT5 4516 aa14.81□□□□□ -0.04
CPSF4-204ENST00000436336 HINT1P49773 126 aaPredicted RBP14.8□□□□□ -0.04
CPSF4-204ENST00000436336 BVES-AS1Q5T3Y7 98 aa14.8□□□□□ -0.04
CPSF4-204ENST00000436336 XAGE1AQ9HD64 81 aa14.8□□□□□ -0.04
CPSF4-204ENST00000436336 FXYD2P54710 66 aa14.78□□□□□ -0.04
CPSF4-204ENST00000436336 GAGE2BQ13066 116 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 69.7 ms