RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 GAGE2BQ13066 116 aa4.02□□□□□ -1.77
USP54-202ENST00000413442 C18orf32Q8TCD1 76 aa4.02□□□□□ -1.77
USP54-202ENST00000413442 DNAH8Q96JB1 4490 aa4.01□□□□□ -1.77
USP54-202ENST00000413442 CHTF8P0CG12 524 aa4.01□□□□□ -1.77
USP54-202ENST00000413442 HAMPP81172 84 aa4.01□□□□□ -1.77
USP54-202ENST00000413442 COX17Q14061 63 aa4.01□□□□□ -1.77
USP54-202ENST00000413442 REG3GQ6UW15 175 aa4.01□□□□□ -1.77
USP54-202ENST00000413442 UNQ6190/PRO20217Q6UXQ8 127 aa4.01□□□□□ -1.77
USP54-202ENST00000413442 LINC00526Q96FQ7 95 aa4.01□□□□□ -1.77
USP54-202ENST00000413442 CDKN2A-AS1Q9UH64 79 aa4.01□□□□□ -1.77
USP54-202ENST00000413442 TRAV12-1A0A0B4J245 112 aa4□□□□□ -1.77
USP54-202ENST00000413442 A0A0J9YXV3 536 aa4□□□□□ -1.77
USP54-202ENST00000413442 LINC00587B1AMM8 73 aa4□□□□□ -1.77
USP54-202ENST00000413442 RPL18AQ02543 176 aaKnown RBP4□□□□□ -1.77
USP54-202ENST00000413442 SRSF9Q13242 221 aaKnown RBP eCLIP4□□□□□ -1.77
USP54-202ENST00000413442 LBHQ53QV2 105 aaPredicted RBP4□□□□□ -1.77
USP54-202ENST00000413442 C9orf116Q5BN46 136 aaPredicted RBP4□□□□□ -1.77
USP54-202ENST00000413442 LINC00469Q8N7U9 141 aa4□□□□□ -1.77
USP54-202ENST00000413442 YPEL4Q96NS1 127 aa4□□□□□ -1.77
USP54-202ENST00000413442 C6orf48Q9UBA6 75 aa4□□□□□ -1.77
USP54-202ENST00000413442 TP73-AS1Q9UF72 201 aa4□□□□□ -1.77
USP54-202ENST00000413442 PLA2G2DQ9UNK4 145 aa4□□□□□ -1.77
USP54-202ENST00000413442 ABCA13Q86UQ4 5058 aa4□□□□□ -1.77
USP54-202ENST00000413442 SMIM1B2RUZ4 78 aa3.99□□□□□ -1.77
USP54-202ENST00000413442 IGLC3P0DOY3 106 aa3.99□□□□□ -1.77
USP54-202ENST00000413442 COX7B2Q8TF08 81 aa3.99□□□□□ -1.77
USP54-202ENST00000413442 TOMM7Q9P0U1 55 aa3.99□□□□□ -1.77
USP54-202ENST00000413442 NUPR1O60356 82 aa3.98□□□□□ -1.77
USP54-202ENST00000413442 HSBP1O75506 76 aa3.98□□□□□ -1.77
USP54-202ENST00000413442 PRR3P79522 188 aaKnown RBP3.98□□□□□ -1.77
USP54-202ENST00000413442 C4orf48Q5BLP8 95 aa3.98□□□□□ -1.77
USP54-202ENST00000413442 C10orf25Q5T742 122 aa3.98□□□□□ -1.77
USP54-202ENST00000413442 BAGE3Q86Y29 109 aa3.98□□□□□ -1.77
USP54-202ENST00000413442 LINC01600Q96MT4 127 aa3.98□□□□□ -1.77
USP54-202ENST00000413442 A0A096LNJ9 63 aa3.97□□□□□ -1.77
USP54-202ENST00000413442 IGLV5-39A0A0G2JS06 123 aa3.97□□□□□ -1.77
USP54-202ENST00000413442 A0A1W2PNN7 141 aa3.97□□□□□ -1.77
USP54-202ENST00000413442 NDUFA6P56556 154 aa3.97□□□□□ -1.77
USP54-202ENST00000413442 C2orf82Q6UX34 121 aa3.97□□□□□ -1.77
USP54-202ENST00000413442 DIRC1Q969H9 104 aa3.97□□□□□ -1.77
USP54-202ENST00000413442 IFI27L1Q96BM0 104 aa3.97□□□□□ -1.77
USP54-202ENST00000413442 URB1-AS1Q96HZ7 61 aa3.97□□□□□ -1.77
USP54-202ENST00000413442 HERV-K104P63124 156 aa3.96□□□□□ -1.78
USP54-202ENST00000413442 RPL24P83731 157 aaKnown RBP3.96□□□□□ -1.78
USP54-202ENST00000413442 GAGE2EQ4V326 116 aa3.96□□□□□ -1.78
USP54-202ENST00000413442 ZC2HC1BQ5TFG8 222 aa3.96□□□□□ -1.78
USP54-202ENST00000413442 GAGE2DQ9UEU5 116 aa3.96□□□□□ -1.78
USP54-202ENST00000413442 HSPB8Q9UJY1 196 aa3.96□□□□□ -1.78
USP54-202ENST00000413442 CHTOPQ9Y3Y2 248 aaKnown RBP3.96□□□□□ -1.78
USP54-202ENST00000413442 IGLV5-37A0A075B6J1 123 aa3.95□□□□□ -1.78
USP54-202ENST00000413442 C11orf86A6NJI1 115 aa3.95□□□□□ -1.78
USP54-202ENST00000413442 LEPROTL1O95214 131 aa3.95□□□□□ -1.78
USP54-202ENST00000413442 TRGC2P03986 189 aa3.95□□□□□ -1.78
USP54-202ENST00000413442 IGLV7-43P04211 117 aa3.95□□□□□ -1.78
USP54-202ENST00000413442 ZNF22P17026 224 aaPredicted RBP3.95□□□□□ -1.78
USP54-202ENST00000413442 AKR1D1P51857 326 aa3.95□□□□□ -1.78
USP54-202ENST00000413442 TMEM170BQ5T4T1 132 aa3.95□□□□□ -1.78
USP54-202ENST00000413442 PSORS1C2Q9UIG4 136 aa3.95□□□□□ -1.78
USP54-202ENST00000413442 COLCA2A8K830 154 aa3.94□□□□□ -1.78
USP54-202ENST00000413442 M0QXV9 152 aa3.94□□□□□ -1.78
USP54-202ENST00000413442 PLNP26678 52 aa3.94□□□□□ -1.78
USP54-202ENST00000413442 UBE2BP63146 152 aa3.94□□□□□ -1.78
USP54-202ENST00000413442 C1orf137Q5JT78 98 aa3.94□□□□□ -1.78
USP54-202ENST00000413442 C9orf129Q5T035 196 aaKnown RBP3.94□□□□□ -1.78
USP54-202ENST00000413442 PHF5AQ7RTV0 110 aaKnown RBP3.94□□□□□ -1.78
USP54-202ENST00000413442 SLC7A5P1Q8MH63 180 aa3.94□□□□□ -1.78
USP54-202ENST00000413442 MAP1LC3CQ9BXW4 147 aa3.94□□□□□ -1.78
USP54-202ENST00000413442 C22orf24Q9Y442 160 aa3.94□□□□□ -1.78
USP54-202ENST00000413442 TMEM223A0PJW6 202 aa3.93□□□□□ -1.78
USP54-202ENST00000413442 ATP6V1G1O75348 118 aa3.93□□□□□ -1.78
USP54-202ENST00000413442 SPINK8P0C7L1 97 aa3.93□□□□□ -1.78
USP54-202ENST00000413442 HNRNPA3P51991 378 aaKnown RBP3.93□□□□□ -1.78
USP54-202ENST00000413442 KRTAP10-8P60410 259 aa3.93□□□□□ -1.78
USP54-202ENST00000413442 CTAG1AP78358 180 aa3.93□□□□□ -1.78
USP54-202ENST00000413442 XP32Q5T750 250 aa3.93□□□□□ -1.78
USP54-202ENST00000413442 MRPL55Q7Z7F7 128 aaKnown RBP3.93□□□□□ -1.78
USP54-202ENST00000413442 CBLN2Q8IUK8 224 aa3.93□□□□□ -1.78
USP54-202ENST00000413442 ERG28Q9UKR5 140 aa3.93□□□□□ -1.78
USP54-202ENST00000413442 FAT1Q14517 4588 aa3.93□□□□□ -1.78
USP54-202ENST00000413442 IGLV1-50A0A075B6I6 118 aa3.92□□□□□ -1.78
USP54-202ENST00000413442 MYMXA0A1B0GTQ4 84 aa3.92□□□□□ -1.78
USP54-202ENST00000413442 H0Y9J4 135 aa3.92□□□□□ -1.78
USP54-202ENST00000413442 ZNF861PO60384 105 aa3.92□□□□□ -1.78
USP54-202ENST00000413442 RPL13AP40429 203 aaKnown RBP3.92□□□□□ -1.78
USP54-202ENST00000413442 RPL28P46779 137 aaKnown RBP3.92□□□□□ -1.78
USP54-202ENST00000413442 NMUP48645 174 aa3.92□□□□□ -1.78
USP54-202ENST00000413442 HERVK_113P61574 105 aa3.92□□□□□ -1.78
USP54-202ENST00000413442 PMCHL1Q16048 86 aa3.92□□□□□ -1.78
USP54-202ENST00000413442 FAM19A5Q7Z5A7 132 aaPredicted RBP3.92□□□□□ -1.78
USP54-202ENST00000413442 NKAPP1Q8N9T2 125 aa3.92□□□□□ -1.78
USP54-202ENST00000413442 PLEKHB2Q96CS7 222 aa3.92□□□□□ -1.78
USP54-202ENST00000413442 ZNF625Q96I27 306 aaPredicted RBP3.92□□□□□ -1.78
USP54-202ENST00000413442 FLG2Q5D862 2391 aaPredicted RBP3.92□□□□□ -1.78
USP54-202ENST00000413442 DMBT1Q9UGM3 2413 aaPredicted RBP3.91□□□□□ -1.78
USP54-202ENST00000413442 FAM168BA1KXE4 195 aa3.91□□□□□ -1.78
USP54-202ENST00000413442 SERF1AO75920 110 aa3.91□□□□□ -1.78
USP54-202ENST00000413442 S100A12P80511 92 aa3.91□□□□□ -1.78
USP54-202ENST00000413442 XAGE1AQ9HD64 81 aa3.91□□□□□ -1.78
USP54-202ENST00000413442 CBY1Q9Y3M2 126 aa3.91□□□□□ -1.78
USP54-202ENST00000413442 IGKV2D-26A0A0A0MRZ7 120 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 424.5 ms