RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 TMEM223A0PJW6 202 aa18.89■□□□□ 0.61
USP42-202ENST00000404008 SDIM1Q6ZPB5 146 aa18.89■□□□□ 0.61
USP42-202ENST00000404008 C10orf25Q5T742 122 aa18.88■□□□□ 0.61
USP42-202ENST00000404008 LINC01545Q5VT33 79 aa18.88■□□□□ 0.61
USP42-202ENST00000404008 C2orf82Q6UX34 121 aa18.88■□□□□ 0.61
USP42-202ENST00000404008 UNQ6190/PRO20217Q6UXQ8 127 aa18.88■□□□□ 0.61
USP42-202ENST00000404008 DNAH8Q96JB1 4490 aa18.87■□□□□ 0.61
USP42-202ENST00000404008 IGKCP01834 107 aa18.87■□□□□ 0.61
USP42-202ENST00000404008 CKS1BP61024 79 aa18.86■□□□□ 0.61
USP42-202ENST00000404008 RNF151Q2KHN1 245 aa18.85■□□□□ 0.61
USP42-202ENST00000404008 C6orf48Q9UBA6 75 aa18.84■□□□□ 0.61
USP42-202ENST00000404008 CXCL5P42830 114 aa18.83■□□□□ 0.61
USP42-202ENST00000404008 Q6ZSA8 131 aa18.83■□□□□ 0.61
USP42-202ENST00000404008 FAM30AQ9NZY2 134 aa18.83■□□□□ 0.61
USP42-202ENST00000404008 APOBP04114 4563 aaKnown RBP18.82■□□□□ 0.6
USP42-202ENST00000404008 TRBV30A0A0K0K1B3 111 aa18.81■□□□□ 0.6
USP42-202ENST00000404008 PKIGQ9Y2B9 76 aa18.8■□□□□ 0.6
USP42-202ENST00000404008 LOC107984640A0A0U1RRK4 108 aa18.78■□□□□ 0.6
USP42-202ENST00000404008 C20orf202A1L168 122 aa18.77■□□□□ 0.6
USP42-202ENST00000404008 CDK2AP2O75956 126 aa18.77■□□□□ 0.6
USP42-202ENST00000404008 TMA7Q9Y2S6 64 aaKnown RBP18.76■□□□□ 0.59
USP42-202ENST00000404008 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP18.76■□□□□ 0.59
USP42-202ENST00000404008 PANO1I0J062 215 aa18.75■□□□□ 0.59
USP42-202ENST00000404008 A0A096LNI7 61 aa18.74■□□□□ 0.59
USP42-202ENST00000404008 TLX1NBP0CAT3 122 aa18.74■□□□□ 0.59
USP42-202ENST00000404008 CHTF8P0CG12 524 aa18.74■□□□□ 0.59
USP42-202ENST00000404008 C9orf116Q5BN46 136 aaPredicted RBP18.74■□□□□ 0.59
USP42-202ENST00000404008 HERVK_113P61574 105 aa18.73■□□□□ 0.59
USP42-202ENST00000404008 CIRBPQ14011 172 aaKnown RBP18.73■□□□□ 0.59
USP42-202ENST00000404008 KIAA1109Q2LD37 5005 aa18.72■□□□□ 0.59
USP42-202ENST00000404008 XGP55808 180 aa18.72■□□□□ 0.59
USP42-202ENST00000404008 IGKV2-24A0A0C4DH68 120 aa18.71■□□□□ 0.59
USP42-202ENST00000404008 LEPROTO15243 131 aa18.7■□□□□ 0.58
USP42-202ENST00000404008 PTTG1IPP53801 180 aa18.7■□□□□ 0.58
USP42-202ENST00000404008 RPL18AQ02543 176 aaKnown RBP18.7■□□□□ 0.58
USP42-202ENST00000404008 SPACA4Q8TDM5 124 aa18.7■□□□□ 0.58
USP42-202ENST00000404008 ZNF625Q96I27 306 aaPredicted RBP18.7■□□□□ 0.58
USP42-202ENST00000404008 HAMPP81172 84 aa18.69■□□□□ 0.58
USP42-202ENST00000404008 SFTA2Q6UW10 78 aa18.69■□□□□ 0.58
USP42-202ENST00000404008 GAGE2BQ13066 116 aa18.68■□□□□ 0.58
USP42-202ENST00000404008 Q6ZRP5 223 aa18.68■□□□□ 0.58
USP42-202ENST00000404008 PLEKHB2Q96CS7 222 aa18.68■□□□□ 0.58
USP42-202ENST00000404008 RYR1P21817 5038 aa18.68■□□□□ 0.58
USP42-202ENST00000404008 NDUFC2-KCTD14E9PQ53 114 aa18.68■□□□□ 0.58
USP42-202ENST00000404008 AKR1D1P51857 326 aa18.68■□□□□ 0.58
USP42-202ENST00000404008 TSPEAR-AS2P59090 65 aa18.68■□□□□ 0.58
USP42-202ENST00000404008 SCXQ7RTU7 201 aa18.68■□□□□ 0.58
USP42-202ENST00000404008 LINC00474Q9P2X8 69 aa18.68■□□□□ 0.58
USP42-202ENST00000404008 E9PLD3 99 aa18.67■□□□□ 0.58
USP42-202ENST00000404008 STPG4Q8N801 248 aa18.67■□□□□ 0.58
USP42-202ENST00000404008 HSPG2P98160 4391 aa18.66■□□□□ 0.58
USP42-202ENST00000404008 J3QQQ9 107 aa18.65■□□□□ 0.58
USP42-202ENST00000404008 MAJINQ3KP22 176 aa18.65■□□□□ 0.58
USP42-202ENST00000404008 ATOH7Q8N100 152 aa18.65■□□□□ 0.58
USP42-202ENST00000404008 CIRBP-AS1Q8TBR5 109 aa18.65■□□□□ 0.58
USP42-202ENST00000404008 DPH3Q96FX2 82 aa18.62■□□□□ 0.57
USP42-202ENST00000404008 NDUFA12Q9UI09 145 aa18.62■□□□□ 0.57
USP42-202ENST00000404008 GAGE2EQ4V326 116 aa18.61■□□□□ 0.57
USP42-202ENST00000404008 GAGE2DQ9UEU5 116 aa18.61■□□□□ 0.57
USP42-202ENST00000404008 ERG28Q9UKR5 140 aa18.61■□□□□ 0.57
USP42-202ENST00000404008 A0A087WYN8 130 aa18.6■□□□□ 0.57
USP42-202ENST00000404008 LGALS3P17931 250 aaKnown RBP18.59■□□□□ 0.57
USP42-202ENST00000404008 MYMXA0A1B0GTQ4 84 aa18.58■□□□□ 0.57
USP42-202ENST00000404008 HERV-K104P63124 156 aa18.58■□□□□ 0.57
USP42-202ENST00000404008 NMUP48645 174 aa18.57■□□□□ 0.56
USP42-202ENST00000404008 COX17Q14061 63 aa18.57■□□□□ 0.56
USP42-202ENST00000404008 PLAC8Q9NZF1 115 aa18.57■□□□□ 0.56
USP42-202ENST00000404008 SCGB1D1O95968 90 aa18.56■□□□□ 0.56
USP42-202ENST00000404008 PFN2P35080 140 aa18.56■□□□□ 0.56
USP42-202ENST00000404008 IGKV2D-26A0A0A0MRZ7 120 aa18.55■□□□□ 0.56
USP42-202ENST00000404008 C9orf129Q5T035 196 aaKnown RBP18.55■□□□□ 0.56
USP42-202ENST00000404008 ANKRD39Q53RE8 183 aa18.54■□□□□ 0.56
USP42-202ENST00000404008 XAGE1AQ9HD64 81 aa18.52■□□□□ 0.55
USP42-202ENST00000404008 A0A1W2PNN7 141 aa18.51■□□□□ 0.55
USP42-202ENST00000404008 EPM2AB3EWF7 344 aa18.5■□□□□ 0.55
USP42-202ENST00000404008 MEIG1Q5JSS6 88 aa18.5■□□□□ 0.55
USP42-202ENST00000404008 FAM168BA1KXE4 195 aa18.49■□□□□ 0.55
USP42-202ENST00000404008 SMR3BP02814 79 aaPredicted RBP18.49■□□□□ 0.55
USP42-202ENST00000404008 SMIM13P0DJ93 91 aa18.48■□□□□ 0.55
USP42-202ENST00000404008 LINC00158P58513 81 aa18.48■□□□□ 0.55
USP42-202ENST00000404008 HERC2O95714 4834 aa18.48■□□□□ 0.55
USP42-202ENST00000404008 LINC00587B1AMM8 73 aa18.47■□□□□ 0.55
USP42-202ENST00000404008 A0A0U1RRA0 63 aa18.46■□□□□ 0.55
USP42-202ENST00000404008 TTTY13Q9BZ97 58 aa18.46■□□□□ 0.55
USP42-202ENST00000404008 JOSD1Q15040 202 aaPredicted RBP18.45■□□□□ 0.54
USP42-202ENST00000404008 KRTAP17-1Q9BYP8 105 aa18.45■□□□□ 0.54
USP42-202ENST00000404008 SND1-IT1Q9HBX3 110 aa18.45■□□□□ 0.54
USP42-202ENST00000404008 HSBP1L1C9JCN9 74 aa18.44■□□□□ 0.54
USP42-202ENST00000404008 A0A0J9YXY3 114 aa18.43■□□□□ 0.54
USP42-202ENST00000404008 ZNF815PA8K554 130 aa18.43■□□□□ 0.54
USP42-202ENST00000404008 FAM19A5Q7Z5A7 132 aaPredicted RBP18.43■□□□□ 0.54
USP42-202ENST00000404008 KRTAP7-1Q8IUC3 87 aa18.43■□□□□ 0.54
USP42-202ENST00000404008 LINC00528Q8N1L1 170 aa18.42■□□□□ 0.54
USP42-202ENST00000404008 Q8N1X5 172 aa18.42■□□□□ 0.54
USP42-202ENST00000404008 SERTAD4-AS1Q5TG53 156 aa18.41■□□□□ 0.54
USP42-202ENST00000404008 FAT1Q14517 4588 aa18.4■□□□□ 0.54
USP42-202ENST00000404008 MIR7-3HGQ8N6C7 128 aa18.4■□□□□ 0.54
USP42-202ENST00000404008 PCP2Q8IVA1 136 aa18.39■□□□□ 0.53
USP42-202ENST00000404008 PLA2G2DQ9UNK4 145 aa18.38■□□□□ 0.53
USP42-202ENST00000404008 PHF5AQ7RTV0 110 aaKnown RBP18.35■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms