RNA–Protein interactions for RNA: ENST00000394272.7

HDDC3-202, Transcript of HD domain containing 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HDDC3, Length 1,880 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-202ENST00000394272 WWC2-AS2Q96NR7 200 aa13.52□□□□□ -0.25
HDDC3-202ENST00000394272 DNAH10Q8IVF4 4471 aa13.52□□□□□ -0.25
HDDC3-202ENST00000394272 SPANXDQ9BXN6 97 aa13.51□□□□□ -0.25
HDDC3-202ENST00000394272 SPANXCQ9NY87 97 aa13.51□□□□□ -0.25
HDDC3-202ENST00000394272 CXCL5P42830 114 aa13.5□□□□□ -0.25
HDDC3-202ENST00000394272 SPAG11BQ08648 103 aa13.5□□□□□ -0.25
HDDC3-202ENST00000394272 CFAP161Q6P656 301 aa13.5□□□□□ -0.25
HDDC3-202ENST00000394272 C2orf82Q6UX34 121 aa13.5□□□□□ -0.25
HDDC3-202ENST00000394272 CIRBPQ14011 172 aaKnown RBP13.49□□□□□ -0.25
HDDC3-202ENST00000394272 MEIG1Q5JSS6 88 aa13.49□□□□□ -0.25
HDDC3-202ENST00000394272 RMI2Q96E14 147 aa13.49□□□□□ -0.25
HDDC3-202ENST00000394272 CKS1BP61024 79 aa13.48□□□□□ -0.25
HDDC3-202ENST00000394272 COL5A1-AS1Q5SY13 56 aa13.48□□□□□ -0.25
HDDC3-202ENST00000394272 Q6ZVH6 145 aa13.48□□□□□ -0.25
HDDC3-202ENST00000394272 C15orf56Q8N910 161 aa13.48□□□□□ -0.25
HDDC3-202ENST00000394272 SMIM13P0DJ93 91 aa13.46□□□□□ -0.25
HDDC3-202ENST00000394272 PTTG1IPP53801 180 aa13.46□□□□□ -0.25
HDDC3-202ENST00000394272 C6orf223Q8N319 242 aa13.46□□□□□ -0.25
HDDC3-202ENST00000394272 MUSTN1Q8IVN3 82 aa13.46□□□□□ -0.26
HDDC3-202ENST00000394272 DAND5Q8N907 189 aa13.46□□□□□ -0.26
HDDC3-202ENST00000394272 LINC00526Q96FQ7 95 aa13.46□□□□□ -0.26
HDDC3-202ENST00000394272 A0A0U1RRA0 63 aa13.45□□□□□ -0.26
HDDC3-202ENST00000394272 A6NDN8 102 aa13.45□□□□□ -0.26
HDDC3-202ENST00000394272 NTN5Q8WTR8 489 aaPredicted RBP13.45□□□□□ -0.26
HDDC3-202ENST00000394272 ERG28Q9UKR5 140 aa13.44□□□□□ -0.26
HDDC3-202ENST00000394272 COX11Q9Y6N1 276 aa13.44□□□□□ -0.26
HDDC3-202ENST00000394272 NBDYA0A0U1RRE5 68 aa13.43□□□□□ -0.26
HDDC3-202ENST00000394272 HIGD2BQ4VC39 106 aa13.43□□□□□ -0.26
HDDC3-202ENST00000394272 TTC32Q5I0X7 151 aa13.43□□□□□ -0.26
HDDC3-202ENST00000394272 CASC10Q5T4H9 136 aa13.43□□□□□ -0.26
HDDC3-202ENST00000394272 KMT2AQ03164 3969 aa13.43□□□□□ -0.26
HDDC3-202ENST00000394272 GVQW2A0A096LPI5 108 aaPredicted RBP13.42□□□□□ -0.26
HDDC3-202ENST00000394272 IFITM1P13164 125 aa13.42□□□□□ -0.26
HDDC3-202ENST00000394272 C10orf25Q5T742 122 aa13.42□□□□□ -0.26
HDDC3-202ENST00000394272 NHP2Q9NX24 153 aaKnown RBP13.42□□□□□ -0.26
HDDC3-202ENST00000394272 TMEM238LA0A1B0GVL6 79 aa13.42□□□□□ -0.26
HDDC3-202ENST00000394272 A6NJY4 79 aa13.42□□□□□ -0.26
HDDC3-202ENST00000394272 ZNF561-AS1K7EIQ3 104 aa13.42□□□□□ -0.26
HDDC3-202ENST00000394272 UNQ6190/PRO20217Q6UXQ8 127 aa13.42□□□□□ -0.26
HDDC3-202ENST00000394272 A0A1B0GWB2 263 aa13.41□□□□□ -0.26
HDDC3-202ENST00000394272 EIF4EBP3O60516 100 aaPredicted RBP13.41□□□□□ -0.26
HDDC3-202ENST00000394272 RPL24P83731 157 aaKnown RBP13.41□□□□□ -0.26
HDDC3-202ENST00000394272 NPC2P61916 151 aa13.4□□□□□ -0.26
HDDC3-202ENST00000394272 MIR7-3HGQ8N6C7 128 aa13.4□□□□□ -0.26
HDDC3-202ENST00000394272 LINC00308Q8TCZ7 52 aa13.4□□□□□ -0.26
HDDC3-202ENST00000394272 A4D1N5 150 aa13.4□□□□□ -0.26
HDDC3-202ENST00000394272 PFN2P35080 140 aa13.4□□□□□ -0.26
HDDC3-202ENST00000394272 LINC00158P58513 81 aa13.4□□□□□ -0.26
HDDC3-202ENST00000394272 C2orf48Q96LS8 159 aa13.4□□□□□ -0.26
HDDC3-202ENST00000394272 TAX1BP3O14907 124 aa13.39□□□□□ -0.27
HDDC3-202ENST00000394272 SOSTDC1Q6X4U4 206 aa13.39□□□□□ -0.27
HDDC3-202ENST00000394272 K7ERJ3 54 aa13.38□□□□□ -0.27
HDDC3-202ENST00000394272 COX17Q14061 63 aa13.38□□□□□ -0.27
HDDC3-202ENST00000394272 USP17L23D6RBM5 183 aa13.38□□□□□ -0.27
HDDC3-202ENST00000394272 C9orf116Q5BN46 136 aaPredicted RBP13.38□□□□□ -0.27
HDDC3-202ENST00000394272 PPDPFQ9H3Y8 114 aa13.38□□□□□ -0.27
HDDC3-202ENST00000394272 DNAH6Q9C0G6 4158 aa13.37□□□□□ -0.27
HDDC3-202ENST00000394272 CAMK2N2Q96S95 79 aa13.37□□□□□ -0.27
HDDC3-202ENST00000394272 C6orf48Q9UBA6 75 aa13.36□□□□□ -0.27
HDDC3-202ENST00000394272 F8WDY8 70 aa13.36□□□□□ -0.27
HDDC3-202ENST00000394272 C3orf84H3BNL1 204 aa13.36□□□□□ -0.27
HDDC3-202ENST00000394272 CFC1BP0CG36 223 aa13.36□□□□□ -0.27
HDDC3-202ENST00000394272 CFC1P0CG37 223 aa13.36□□□□□ -0.27
HDDC3-202ENST00000394272 COPS9Q8WXC6 57 aa13.36□□□□□ -0.27
HDDC3-202ENST00000394272 ALMS1Q8TCU4 4167 aa13.35□□□□□ -0.27
HDDC3-202ENST00000394272 TRBV30A0A0K0K1B3 111 aa13.35□□□□□ -0.27
HDDC3-202ENST00000394272 DNAH2Q9P225 4427 aa13.34□□□□□ -0.27
HDDC3-202ENST00000394272 Q6ZRU5 148 aa13.33□□□□□ -0.27
HDDC3-202ENST00000394272 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.33□□□□□ -0.28
HDDC3-202ENST00000394272 RAB37Q96AX2 223 aa13.33□□□□□ -0.28
HDDC3-202ENST00000394272 A0A0B4J2C4 111 aa13.31□□□□□ -0.28
HDDC3-202ENST00000394272 LECT2O14960 151 aa13.31□□□□□ -0.28
HDDC3-202ENST00000394272 PSCAO43653 123 aa13.31□□□□□ -0.28
HDDC3-202ENST00000394272 WFDC2Q14508 124 aa13.31□□□□□ -0.28
HDDC3-202ENST00000394272 Q6ZR54 194 aa13.31□□□□□ -0.28
HDDC3-202ENST00000394272 Q6ZRN7 208 aaPredicted RBP13.31□□□□□ -0.28
HDDC3-202ENST00000394272 LOC107984156A0A0G2JMH3 177 aa13.3□□□□□ -0.28
HDDC3-202ENST00000394272 M0R2N4 97 aa13.3□□□□□ -0.28
HDDC3-202ENST00000394272 SYCNQ0VAF6 134 aa13.3□□□□□ -0.28
HDDC3-202ENST00000394272 ARL17AQ8IVW1 177 aa13.3□□□□□ -0.28
HDDC3-202ENST00000394272 SLPIP03973 132 aa13.29□□□□□ -0.28
HDDC3-202ENST00000394272 LINC00476Q8WZB0 136 aa13.29□□□□□ -0.28
HDDC3-202ENST00000394272 C9orf118A6NHY6 69 aa13.29□□□□□ -0.28
HDDC3-202ENST00000394272 LY6G6CO95867 125 aa13.27□□□□□ -0.28
HDDC3-202ENST00000394272 SND1-IT1Q9HBX3 110 aa13.27□□□□□ -0.28
HDDC3-202ENST00000394272 PRO1854Q9UHT4 67 aa13.27□□□□□ -0.29
HDDC3-202ENST00000394272 CARD19Q96LW7 228 aa13.26□□□□□ -0.29
HDDC3-202ENST00000394272 RNF151Q2KHN1 245 aa13.25□□□□□ -0.29
HDDC3-202ENST00000394272 NAA38Q9BRA0 125 aaKnown RBP13.25□□□□□ -0.29
HDDC3-202ENST00000394272 PGPEP1Q9NXJ5 209 aa13.25□□□□□ -0.29
HDDC3-202ENST00000394272 LRCOL1A6NCL2 159 aa13.24□□□□□ -0.29
HDDC3-202ENST00000394272 H3BUT2 72 aa13.24□□□□□ -0.29
HDDC3-202ENST00000394272 NDUFC2-KCTD14E9PQ53 114 aa13.23□□□□□ -0.29
HDDC3-202ENST00000394272 TSPAN13O95857 204 aa13.23□□□□□ -0.29
HDDC3-202ENST00000394272 IGKV2-28A0A075B6P5 120 aa13.22□□□□□ -0.29
HDDC3-202ENST00000394272 IGKV2D-28P01615 120 aa13.22□□□□□ -0.29
HDDC3-202ENST00000394272 C14orf177Q52M58 125 aa13.21□□□□□ -0.29
HDDC3-202ENST00000394272 DNAH17Q9UFH2 4485 aa13.2□□□□□ -0.3
HDDC3-202ENST00000394272 TLX1NBP0CAT3 122 aa13.2□□□□□ -0.3
HDDC3-202ENST00000394272 NDUFC2O95298 119 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.8 ms