RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 PAX4O43316 350 aa12.92□□□□□ -0.34
CCDC3-201ENST00000378825 PF4P02776 101 aa12.91□□□□□ -0.34
CCDC3-201ENST00000378825 COX7CP15954 63 aa12.91□□□□□ -0.34
CCDC3-201ENST00000378825 CXCL5P42830 114 aa12.91□□□□□ -0.34
CCDC3-201ENST00000378825 PDZD2O15018 2839 aa12.91□□□□□ -0.34
CCDC3-201ENST00000378825 PRR3P79522 188 aaKnown RBP12.9□□□□□ -0.34
CCDC3-201ENST00000378825 HIST1H4AP62805 103 aaKnown RBP12.9□□□□□ -0.34
CCDC3-201ENST00000378825 CLPSL2Q6UWE3 100 aa12.89□□□□□ -0.35
CCDC3-201ENST00000378825 TRGV4A0A0C4DH28 118 aa12.88□□□□□ -0.35
CCDC3-201ENST00000378825 SS18Q15532 418 aa12.88□□□□□ -0.35
CCDC3-201ENST00000378825 CCL24O00175 119 aa12.88□□□□□ -0.35
CCDC3-201ENST00000378825 NOTCH2Q04721 2471 aa12.88□□□□□ -0.35
CCDC3-201ENST00000378825 ANK3Q12955 4377 aaKnown RBP12.87□□□□□ -0.35
CCDC3-201ENST00000378825 A0A1B0GX51 115 aa12.86□□□□□ -0.35
CCDC3-201ENST00000378825 CFAP161Q6P656 301 aa12.86□□□□□ -0.35
CCDC3-201ENST00000378825 LINC01561Q8N1V8 128 aa12.86□□□□□ -0.35
CCDC3-201ENST00000378825 TRBV6-8A0A0A6YYG3 113 aa12.85□□□□□ -0.35
CCDC3-201ENST00000378825 XCL1P47992 114 aa12.85□□□□□ -0.35
CCDC3-201ENST00000378825 WFDC9Q8NEX5 89 aa12.85□□□□□ -0.35
CCDC3-201ENST00000378825 OBSCN-AS1Q96MR7 158 aa12.85□□□□□ -0.35
CCDC3-201ENST00000378825 FASNP49327 2511 aaKnown RBP12.85□□□□□ -0.35
CCDC3-201ENST00000378825 A0A087WZ39 114 aa12.84□□□□□ -0.35
CCDC3-201ENST00000378825 UNC79Q9P2D8 2635 aa12.84□□□□□ -0.35
CCDC3-201ENST00000378825 IBA57-AS1B1ANH7 110 aa12.83□□□□□ -0.35
CCDC3-201ENST00000378825 RPL18AQ02543 176 aaKnown RBP12.83□□□□□ -0.35
CCDC3-201ENST00000378825 H0YGX0 51 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 ATOX1O00244 68 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 HILS1P60008 231 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 FHL2Q14192 279 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 C6orf226Q5I0X4 101 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 KIR2DL5BQ8NHK3 375 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 TRBV6-4A0A1B0GX49 114 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 A0A096LPF7 62 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 LINC00959A0A1B0GUT2 108 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 CRYGAP11844 174 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 TMEM86BQ8N661 226 aa12.82□□□□□ -0.36
CCDC3-201ENST00000378825 DEFB130BP0DP73 79 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 DEFB130AP0DP74 79 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 Q6JHZ5 121 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 LINC01006Q8NI28 216 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 C16orf74Q96GX8 76 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 OVOL2Q9BRP0 275 aa12.8□□□□□ -0.36
CCDC3-201ENST00000378825 HECTD1Q9ULT8 2610 aa12.79□□□□□ -0.36
CCDC3-201ENST00000378825 NANOS2P60321 138 aaKnown RBP12.79□□□□□ -0.36
CCDC3-201ENST00000378825 TRAV25A0A0B4J276 109 aa12.78□□□□□ -0.36
CCDC3-201ENST00000378825 KRTAP1-1Q07627 177 aa12.78□□□□□ -0.36
CCDC3-201ENST00000378825 USP17L23D6RBM5 183 aa12.78□□□□□ -0.36
CCDC3-201ENST00000378825 CSNK1G2-AS1Q8NCQ2 148 aa12.78□□□□□ -0.36
CCDC3-201ENST00000378825 RNASE1P07998 156 aaKnown RBP12.77□□□□□ -0.36
CCDC3-201ENST00000378825 FAM19A5Q7Z5A7 132 aaPredicted RBP12.77□□□□□ -0.36
CCDC3-201ENST00000378825 ORMDL1Q9P0S3 153 aa12.77□□□□□ -0.36
CCDC3-201ENST00000378825 Q8N3U1 123 aa12.77□□□□□ -0.37
CCDC3-201ENST00000378825 C9orf116Q5BN46 136 aaPredicted RBP12.76□□□□□ -0.37
CCDC3-201ENST00000378825 C19orf73Q9NVV2 129 aa12.76□□□□□ -0.37
CCDC3-201ENST00000378825 HIVEP2P31629 2446 aa12.76□□□□□ -0.37
CCDC3-201ENST00000378825 Q8NDZ9 215 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 UPK3BQ9BT76 320 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 VWFP04275 2813 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 LY6G6DO95868 133 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 SMR3AQ99954 134 aa12.75□□□□□ -0.37
CCDC3-201ENST00000378825 FAM19A1Q7Z5A9 133 aa12.74□□□□□ -0.37
CCDC3-201ENST00000378825 SERP2Q8N6R1 65 aa12.74□□□□□ -0.37
CCDC3-201ENST00000378825 DSCR8Q96T75 97 aa12.74□□□□□ -0.37
CCDC3-201ENST00000378825 J3KT08 172 aa12.73□□□□□ -0.37
CCDC3-201ENST00000378825 IGLV10-54A0A075B6I4 117 aa12.73□□□□□ -0.37
CCDC3-201ENST00000378825 OXTP01178 125 aa12.73□□□□□ -0.37
CCDC3-201ENST00000378825 CCKP06307 115 aa12.73□□□□□ -0.37
CCDC3-201ENST00000378825 GYPEP15421 78 aa12.72□□□□□ -0.37
CCDC3-201ENST00000378825 TRAV23DV6A0A075B6W5 121 aa12.71□□□□□ -0.37
CCDC3-201ENST00000378825 Q8N814 137 aa12.71□□□□□ -0.37
CCDC3-201ENST00000378825 ENHOQ6UWT2 76 aa12.69□□□□□ -0.38
CCDC3-201ENST00000378825 SPATA3Q8NHX4 192 aa12.69□□□□□ -0.38
CCDC3-201ENST00000378825 M0R2N4 97 aa12.68□□□□□ -0.38
CCDC3-201ENST00000378825 DPH3Q96FX2 82 aa12.67□□□□□ -0.38
CCDC3-201ENST00000378825 C6orf99Q4VX62 202 aa12.67□□□□□ -0.38
CCDC3-201ENST00000378825 Q8IZM0 81 aa12.67□□□□□ -0.38
CCDC3-201ENST00000378825 LINC00269Q8N2A0 174 aa12.66□□□□□ -0.38
CCDC3-201ENST00000378825 IGLV1-51P01701 117 aa12.66□□□□□ -0.38
CCDC3-201ENST00000378825 KIAA0087Q14695 138 aa12.66□□□□□ -0.38
CCDC3-201ENST00000378825 LINC00167Q96N53 147 aa12.66□□□□□ -0.38
CCDC3-201ENST00000378825 OTOGQ6ZRI0 2925 aa12.65□□□□□ -0.38
CCDC3-201ENST00000378825 GHRHP01286 108 aa12.65□□□□□ -0.38
CCDC3-201ENST00000378825 DEFB4AO15263 64 aa12.63□□□□□ -0.39
CCDC3-201ENST00000378825 C16orf95Q9H693 158 aa12.63□□□□□ -0.39
CCDC3-201ENST00000378825 SMIM9A6NGZ8 99 aa12.63□□□□□ -0.39
CCDC3-201ENST00000378825 TENM1Q9UKZ4 2725 aa12.63□□□□□ -0.39
CCDC3-201ENST00000378825 C6orf223Q8N319 242 aa12.62□□□□□ -0.39
CCDC3-201ENST00000378825 KRTAP10-3P60369 221 aa12.61□□□□□ -0.39
CCDC3-201ENST00000378825 C10orf25Q5T742 122 aa12.61□□□□□ -0.39
CCDC3-201ENST00000378825 TMEM256-PLSCR3K7ERE1 68 aa12.61□□□□□ -0.39
CCDC3-201ENST00000378825 TMEM258P61165 79 aa12.61□□□□□ -0.39
CCDC3-201ENST00000378825 JMJD7-PLA2G4BH0Y9G9 81 aa12.6□□□□□ -0.39
CCDC3-201ENST00000378825 CHCHD10Q8WYQ3 142 aaPredicted RBP12.6□□□□□ -0.39
CCDC3-201ENST00000378825 J3QKU1 62 aa12.59□□□□□ -0.39
CCDC3-201ENST00000378825 A0A1B0GUV1 79 aa12.59□□□□□ -0.39
CCDC3-201ENST00000378825 RPS28P62857 69 aaKnown RBP12.58□□□□□ -0.4
CCDC3-201ENST00000378825 KMT2BQ9UMN6 2715 aaPredicted RBP12.58□□□□□ -0.4
CCDC3-201ENST00000378825 ANGP03950 147 aaKnown RBP12.58□□□□□ -0.4
CCDC3-201ENST00000378825 C20orf197Q8N268 126 aa12.58□□□□□ -0.4
CCDC3-201ENST00000378825 UNQ6190/PRO20217Q6UXQ8 127 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms