RNA–Protein interactions for RNA: ENST00000364739.1

RNU4-28P-201, Transcript of RNA, U4 small nuclear 28, pseudogene, humanhuman

BASIC

Gene RNU4-28P, Length 141 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-28P-201ENST00000364739 TRAV2A0A0B4J234 112 aa-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 PITX3O75364 302 aa-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 S100PP25815 95 aa-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 GNG10P50151 68 aa-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 OR8I2Q8N0Y5 310 aa-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 VSTM2AQ8TAG5 236 aa-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 DEFB104AQ8WTQ1 72 aa-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 NDUFA4L2Q9NRX3 87 aa-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 NOP16Q9Y3C1 178 aaKnown RBP-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 MAST1Q9Y2H9 1570 aa-1.55□□□□□ -2.66
RNU4-28P-201ENST00000364739 Q6JHZ5 121 aa-1.56□□□□□ -2.66
RNU4-28P-201ENST00000364739 DNAJC15Q9Y5T4 150 aa-1.56□□□□□ -2.66
RNU4-28P-201ENST00000364739 ERVK-7P63135 1459 aa-1.56□□□□□ -2.66
RNU4-28P-201ENST00000364739 NRXN3Q9Y4C0 1643 aa-1.57□□□□□ -2.66
RNU4-28P-201ENST00000364739 SMIM6P0DI80 62 aa-1.57□□□□□ -2.66
RNU4-28P-201ENST00000364739 TMEM91Q6ZNR0 172 aa-1.57□□□□□ -2.66
RNU4-28P-201ENST00000364739 NDUFA11Q86Y39 141 aa-1.57□□□□□ -2.66
RNU4-28P-201ENST00000364739 DPH3P1Q9H4G8 78 aa-1.57□□□□□ -2.66
RNU4-28P-201ENST00000364739 MUC22E2RYF6 1773 aaPredicted RBP-1.57□□□□□ -2.66
RNU4-28P-201ENST00000364739 PHLPP1O60346 1717 aa-1.57□□□□□ -2.66
RNU4-28P-201ENST00000364739 MYH7P12883 1935 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 SHROOM2Q13796 1616 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 USP32Q8NFA0 1604 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 MT-ND4LP03901 98 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 C5orf38Q86SI9 138 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 OR9Q1Q8NGQ5 310 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 MRPL40Q9NQ50 206 aaKnown RBP-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 ZMYM4Q5VZL5 1548 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 LRRC7Q96NW7 1537 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 PKD1L3Q7Z443 1732 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 UBR1Q8IWV7 1749 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 CLIP1P30622 1438 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 TMEM131LA2VDJ0 1609 aa-1.58□□□□□ -2.66
RNU4-28P-201ENST00000364739 ARHGEF12Q9NZN5 1544 aa-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 LRRC37A2A6NM11 1700 aa-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 SCIMPQ6UWF3 145 aa-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 FDCSPQ8NFU4 85 aa-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 SMIM4Q8WVI0 70 aa-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 PSMG3Q9BT73 122 aaPredicted RBP-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 TPT1P8Q9HAU6 139 aa-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 NOP10Q9NPE3 64 aaKnown RBP-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 CALML5Q9NZT1 146 aa-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 ERG28Q9UKR5 140 aa-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 OVOS2A0A0G2JMS6 1433 aa-1.59□□□□□ -2.66
RNU4-28P-201ENST00000364739 E5RI56 91 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 M0QY20 66 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 DEFB130BP0DP73 79 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 DEFB130AP0DP74 79 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 UBE2D1P51668 147 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 RRAS2P62070 204 aaPredicted RBP-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 NMSQ5H8A3 153 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 SAMD13Q5VXD3 122 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 BAGE3Q86Y29 109 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 ATP6V0E2Q8NHE4 81 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 BANF2Q9H503 90 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 IFT172Q9UG01 1749 aa-1.6□□□□□ -2.67
RNU4-28P-201ENST00000364739 ZC3H13Q5T200 1668 aaKnown RBP-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 MLH3Q9UHC1 1453 aa-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 M0R135 149 aa-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 UBE2L3P68036 154 aaKnown RBP-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 C9orf116Q5BN46 136 aaPredicted RBP-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 TMEM35BQ8NCS4 154 aa-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 WFDC6Q9BQY6 131 aa-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 DISP2A7MBM2 1401 aa-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 LY75O60449 1722 aa-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 TOGARAM1Q9Y4F4 1720 aa-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-1.61□□□□□ -2.67
RNU4-28P-201ENST00000364739 MYH13Q9UKX3 1938 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 NCOA2Q15596 1464 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 XRN1Q8IZH2 1706 aaKnown RBP-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 DIP2CQ9Y2E4 1556 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 PRG4Q92954 1404 aaPredicted RBP-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 SIX6O95475 246 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 PPP1R17O96001 155 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 ACYP1P07311 99 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 PAEPP09466 180 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 COX17Q14061 63 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 TMEM170BQ5T4T1 132 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 PPP1R2P3Q6NXS1 205 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 KIF21BO75037 1637 aa-1.62□□□□□ -2.67
RNU4-28P-201ENST00000364739 THOC2Q8NI27 1593 aaKnown RBP-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 DPM2O94777 84 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 EDDM3BP56851 147 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 B2MP61769 119 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 TMEM128Q5BJH2 165 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 CLLU1Q5K131 121 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 ZNF436-AS1Q8NC38 126 aaPredicted RBP-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 MAGI3Q5TCQ9 1506 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 ANKRD36CQ5JPF3 1778 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 A0A0G2JMZ2 1700 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 LRRC37AA6NMS7 1700 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 C4AP0C0L4 1744 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 C4BP0C0L5 1744 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 UHRF1BP1LA0JNW5 1464 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 A2ML1A8K2U0 1454 aa-1.63□□□□□ -2.67
RNU4-28P-201ENST00000364739 A0A1B0GUL6 1792 aa-1.64□□□□□ -2.67
RNU4-28P-201ENST00000364739 SCN11AQ9UI33 1791 aa-1.64□□□□□ -2.67
RNU4-28P-201ENST00000364739 BORCS7-ASMTA0A0B4J1R7 106 aa-1.64□□□□□ -2.67
RNU4-28P-201ENST00000364739 SPTY2D1-AS1A0A0U1RR47 76 aa-1.64□□□□□ -2.67
RNU4-28P-201ENST00000364739 CTXND1A0A1B0GTU2 59 aa-1.64□□□□□ -2.67
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms