RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 SPINT4Q6UDR6 99 aa6.74□□□□□ -1.33
VPS13A-203ENST00000360280 PSMG3-AS1Q96PY0 264 aa6.74□□□□□ -1.33
VPS13A-203ENST00000360280 LMO4P61968 165 aa6.74□□□□□ -1.33
VPS13A-203ENST00000360280 BRWD1-AS2P59051 145 aa6.74□□□□□ -1.33
VPS13A-203ENST00000360280 LINC00482Q8N8I6 264 aa6.74□□□□□ -1.33
VPS13A-203ENST00000360280 CRIP2P52943 208 aaPredicted RBP6.73□□□□□ -1.33
VPS13A-203ENST00000360280 RPS28P62857 69 aaKnown RBP6.73□□□□□ -1.33
VPS13A-203ENST00000360280 LINC00242Q5T6M2 205 aa6.73□□□□□ -1.33
VPS13A-203ENST00000360280 C6orf223Q8N319 242 aa6.73□□□□□ -1.33
VPS13A-203ENST00000360280 BDP1A6H8Y1 2624 aa6.73□□□□□ -1.33
VPS13A-203ENST00000360280 UNQ6190/PRO20217Q6UXQ8 127 aa6.72□□□□□ -1.33
VPS13A-203ENST00000360280 RETNLBQ9BQ08 111 aa6.72□□□□□ -1.33
VPS13A-203ENST00000360280 ATP11AUNQ6ZP68 121 aa6.72□□□□□ -1.33
VPS13A-203ENST00000360280 PRR9Q5T870 116 aa6.72□□□□□ -1.33
VPS13A-203ENST00000360280 A0A1B0GW54 56 aa6.72□□□□□ -1.33
VPS13A-203ENST00000360280 MSMPQ1L6U9 139 aa6.72□□□□□ -1.33
VPS13A-203ENST00000360280 MUC22E2RYF6 1773 aaPredicted RBP6.71□□□□□ -1.33
VPS13A-203ENST00000360280 C9orf116Q5BN46 136 aaPredicted RBP6.71□□□□□ -1.33
VPS13A-203ENST00000360280 C6orf48Q9UBA6 75 aa6.71□□□□□ -1.34
VPS13A-203ENST00000360280 M0R2N4 97 aa6.71□□□□□ -1.34
VPS13A-203ENST00000360280 FSHBP01225 129 aa6.71□□□□□ -1.34
VPS13A-203ENST00000360280 PLA2G1BP04054 148 aaKnown RBP6.71□□□□□ -1.34
VPS13A-203ENST00000360280 IGKV2D-30A0A075B6S6 120 aa6.71□□□□□ -1.34
VPS13A-203ENST00000360280 IGKV2-30P06310 120 aa6.71□□□□□ -1.34
VPS13A-203ENST00000360280 ZFHX2Q9C0A1 2572 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-203ENST00000360280 PRR3P79522 188 aaKnown RBP6.7□□□□□ -1.34
VPS13A-203ENST00000360280 LY6G6CO95867 125 aa6.7□□□□□ -1.34
VPS13A-203ENST00000360280 BCE1O60756 84 aa6.7□□□□□ -1.34
VPS13A-203ENST00000360280 Q6ZSV7 163 aa6.69□□□□□ -1.34
VPS13A-203ENST00000360280 COX6A2Q02221 97 aa6.69□□□□□ -1.34
VPS13A-203ENST00000360280 AMELXQ99217 191 aa6.69□□□□□ -1.34
VPS13A-203ENST00000360280 IGLV5-52A0A0A0MRZ9 124 aa6.69□□□□□ -1.34
VPS13A-203ENST00000360280 ADAMTSL4-AS1Q5T5F5 129 aa6.69□□□□□ -1.34
VPS13A-203ENST00000360280 Q6ZPA2 131 aa6.69□□□□□ -1.34
VPS13A-203ENST00000360280 C2orf48Q96LS8 159 aa6.69□□□□□ -1.34
VPS13A-203ENST00000360280 A0A1B0GUV1 79 aa6.68□□□□□ -1.34
VPS13A-203ENST00000360280 C11orf21Q9P2W6 132 aa6.68□□□□□ -1.34
VPS13A-203ENST00000360280 Q8N2B8 174 aa6.68□□□□□ -1.34
VPS13A-203ENST00000360280 IGLV1-40P01703 118 aa6.68□□□□□ -1.34
VPS13A-203ENST00000360280 LINC00846Q9NV44 126 aa6.68□□□□□ -1.34
VPS13A-203ENST00000360280 H3BPC8 53 aa6.68□□□□□ -1.34
VPS13A-203ENST00000360280 SMIM29Q86T20 159 aa6.67□□□□□ -1.34
VPS13A-203ENST00000360280 PRM2P04554 102 aa6.67□□□□□ -1.34
VPS13A-203ENST00000360280 DEFB116Q30KQ4 102 aa6.67□□□□□ -1.34
VPS13A-203ENST00000360280 LINC01561Q8N1V8 128 aa6.67□□□□□ -1.34
VPS13A-203ENST00000360280 INAFM1C9JVW0 142 aa6.67□□□□□ -1.34
VPS13A-203ENST00000360280 GAS8-AS1O95177 125 aa6.67□□□□□ -1.34
VPS13A-203ENST00000360280 C1orf229Q6ZS94 237 aaPredicted RBP6.66□□□□□ -1.34
VPS13A-203ENST00000360280 TSPEAR-AS2P59090 65 aa6.66□□□□□ -1.34
VPS13A-203ENST00000360280 LINC01556Q5JQF7 62 aa6.66□□□□□ -1.34
VPS13A-203ENST00000360280 C4orf26Q17RF5 130 aa6.65□□□□□ -1.35
VPS13A-203ENST00000360280 Q9UF83 564 aa6.65□□□□□ -1.35
VPS13A-203ENST00000360280 TRAV22A0A0B4J277 110 aa6.64□□□□□ -1.35
VPS13A-203ENST00000360280 ANKRD17O75179 2603 aaKnown RBP6.64□□□□□ -1.35
VPS13A-203ENST00000360280 CDIP1Q9H305 208 aa6.64□□□□□ -1.35
VPS13A-203ENST00000360280 LINC00337Q8N6G1 96 aa6.63□□□□□ -1.35
VPS13A-203ENST00000360280 PLA2G5P39877 138 aa6.63□□□□□ -1.35
VPS13A-203ENST00000360280 C11orf71Q6IPW1 123 aa6.63□□□□□ -1.35
VPS13A-203ENST00000360280 LINC01006Q8NI28 216 aa6.63□□□□□ -1.35
VPS13A-203ENST00000360280 NOTCH2Q04721 2471 aa6.63□□□□□ -1.35
VPS13A-203ENST00000360280 C10orf99Q6UWK7 81 aa6.63□□□□□ -1.35
VPS13A-203ENST00000360280 WDR87Q6ZQQ6 2873 aa6.62□□□□□ -1.35
VPS13A-203ENST00000360280 Q8NA96 180 aa6.62□□□□□ -1.35
VPS13A-203ENST00000360280 LINC00310P59036 64 aa6.62□□□□□ -1.35
VPS13A-203ENST00000360280 SSBP3-AS1Q7Z2R9 100 aa6.61□□□□□ -1.35
VPS13A-203ENST00000360280 URB1-AS1Q96HZ7 61 aa6.61□□□□□ -1.35
VPS13A-203ENST00000360280 IGLV4-60A0A075B6I1 120 aa6.6□□□□□ -1.35
VPS13A-203ENST00000360280 A8MTW9 85 aa6.6□□□□□ -1.35
VPS13A-203ENST00000360280 CYP4F30PQ9H0H9 118 aa6.6□□□□□ -1.35
VPS13A-203ENST00000360280 FHL2Q14192 279 aa6.6□□□□□ -1.35
VPS13A-203ENST00000360280 CRIP3Q6Q6R5 217 aa6.6□□□□□ -1.35
VPS13A-203ENST00000360280 COX8CQ7Z4L0 72 aa6.6□□□□□ -1.35
VPS13A-203ENST00000360280 C18orf65Q6ZTR6 163 aa6.59□□□□□ -1.35
VPS13A-203ENST00000360280 C11orf72Q8NBR9 251 aa6.58□□□□□ -1.36
VPS13A-203ENST00000360280 F8P00451 2351 aa6.58□□□□□ -1.36
VPS13A-203ENST00000360280 ZFYVE26Q68DK2 2539 aa6.58□□□□□ -1.36
VPS13A-203ENST00000360280 SPATA3Q8NHX4 192 aa6.58□□□□□ -1.36
VPS13A-203ENST00000360280 LOC110117498A0A087WWA1 95 aa6.58□□□□□ -1.36
VPS13A-203ENST00000360280 LY6G6DO95868 133 aa6.57□□□□□ -1.36
VPS13A-203ENST00000360280 CRIPTQ9P021 101 aa6.57□□□□□ -1.36
VPS13A-203ENST00000360280 ZNF580Q9UK33 172 aa6.57□□□□□ -1.36
VPS13A-203ENST00000360280 IGLV1-51P01701 117 aa6.57□□□□□ -1.36
VPS13A-203ENST00000360280 PIEZO2Q9H5I5 2752 aa6.57□□□□□ -1.36
VPS13A-203ENST00000360280 LINC00313P59037 77 aa6.57□□□□□ -1.36
VPS13A-203ENST00000360280 ODF3L2Q3SX64 289 aa6.57□□□□□ -1.36
VPS13A-203ENST00000360280 NAV2Q8IVL1 2488 aa6.56□□□□□ -1.36
VPS13A-203ENST00000360280 MOBPQ13875 183 aa6.56□□□□□ -1.36
VPS13A-203ENST00000360280 KIAA0087Q14695 138 aa6.56□□□□□ -1.36
VPS13A-203ENST00000360280 C19orf84I3L1E1 186 aa6.56□□□□□ -1.36
VPS13A-203ENST00000360280 TLN2Q9Y4G6 2542 aa6.56□□□□□ -1.36
VPS13A-203ENST00000360280 LOC101927531A0A1B0GV80 90 aa6.55□□□□□ -1.36
VPS13A-203ENST00000360280 LINC01600Q96MT4 127 aa6.55□□□□□ -1.36
VPS13A-203ENST00000360280 SPACA4Q8TDM5 124 aa6.55□□□□□ -1.36
VPS13A-203ENST00000360280 UQCR11O14957 56 aa6.55□□□□□ -1.36
VPS13A-203ENST00000360280 IGLV8-61A0A075B6I0 122 aa6.55□□□□□ -1.36
VPS13A-203ENST00000360280 A0A1W2PNU3 283 aaPredicted RBP6.55□□□□□ -1.36
VPS13A-203ENST00000360280 C1orf134Q5TEV5 83 aa6.55□□□□□ -1.36
VPS13A-203ENST00000360280 LINC01546A6NGU7 62 aa6.55□□□□□ -1.36
VPS13A-203ENST00000360280 ELOF1P60002 83 aaKnown RBP6.55□□□□□ -1.36
VPS13A-203ENST00000360280 CD164Q04900 197 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms