RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 XAGE1AQ9HD64 81 aa8.63□□□□□ -1.03
PRPF40A-201ENST00000354363 NUPR1O60356 82 aa8.62□□□□□ -1.03
PRPF40A-201ENST00000354363 HERVK_113P63121 156 aa8.62□□□□□ -1.03
PRPF40A-201ENST00000354363 NXT2Q9NPJ8 142 aaKnown RBP8.62□□□□□ -1.03
PRPF40A-201ENST00000354363 CDKN2A-AS1Q9UH64 79 aa8.62□□□□□ -1.03
PRPF40A-201ENST00000354363 CARHSP1Q9Y2V2 147 aaKnown RBP8.62□□□□□ -1.03
PRPF40A-201ENST00000354363 SEC11AP67812 179 aa8.61□□□□□ -1.03
PRPF40A-201ENST00000354363 LBHQ53QV2 105 aaPredicted RBP8.61□□□□□ -1.03
PRPF40A-201ENST00000354363 TIMM17AQ99595 171 aa8.61□□□□□ -1.03
PRPF40A-201ENST00000354363 CTDSP1Q9GZU7 261 aa8.61□□□□□ -1.03
PRPF40A-201ENST00000354363 F8VRH5 84 aa8.6□□□□□ -1.03
PRPF40A-201ENST00000354363 PRR4Q16378 134 aa8.6□□□□□ -1.03
PRPF40A-201ENST00000354363 PAPPA-AS1Q5QFB9 102 aa8.6□□□□□ -1.03
PRPF40A-201ENST00000354363 GEMIN7Q9H840 131 aaKnown RBP8.6□□□□□ -1.03
PRPF40A-201ENST00000354363 TOMM6Q96B49 74 aa8.59□□□□□ -1.03
PRPF40A-201ENST00000354363 TP73-AS1Q9UF72 201 aa8.59□□□□□ -1.03
PRPF40A-201ENST00000354363 G0S2P27469 103 aa8.58□□□□□ -1.04
PRPF40A-201ENST00000354363 CXCL5P42830 114 aa8.58□□□□□ -1.04
PRPF40A-201ENST00000354363 KIAA1644Q3SXP7 199 aa8.58□□□□□ -1.04
PRPF40A-201ENST00000354363 MRPL55Q7Z7F7 128 aaKnown RBP8.58□□□□□ -1.04
PRPF40A-201ENST00000354363 SMIM1B2RUZ4 78 aa8.57□□□□□ -1.04
PRPF40A-201ENST00000354363 ERASQ7Z444 233 aa8.56□□□□□ -1.04
PRPF40A-201ENST00000354363 BCE1O60756 84 aa8.55□□□□□ -1.04
PRPF40A-201ENST00000354363 SCGB3A1Q96QR1 104 aa8.55□□□□□ -1.04
PRPF40A-201ENST00000354363 TINCRA0A1B0GVN0 87 aa8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 ADCYAP1P18509 176 aa8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 RPL28P46779 137 aaKnown RBP8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 RAB14P61106 215 aa8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 PDZD11Q5EBL8 140 aa8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 COX7B2Q8TF08 81 aa8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 LINC00167Q96N53 147 aa8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 IGLV5-45A0A087WSX0 123 aa8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 A0A087X002 238 aa8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 TSPAN13O95857 204 aa8.54□□□□□ -1.04
PRPF40A-201ENST00000354363 RPL37AP8A6NKH3 93 aa8.53□□□□□ -1.04
PRPF40A-201ENST00000354363 LINC01546A6NGU7 62 aa8.51□□□□□ -1.05
PRPF40A-201ENST00000354363 IGLV5-37A0A075B6J1 123 aa8.51□□□□□ -1.05
PRPF40A-201ENST00000354363 TRAV9-1A0A075B6T8 112 aa8.51□□□□□ -1.05
PRPF40A-201ENST00000354363 GAGE10A6NGK3 116 aa8.51□□□□□ -1.05
PRPF40A-201ENST00000354363 SPINK8P0C7L1 97 aa8.51□□□□□ -1.05
PRPF40A-201ENST00000354363 CRYGAP11844 174 aa8.51□□□□□ -1.05
PRPF40A-201ENST00000354363 TYMSOSQ8TAI1 123 aa8.51□□□□□ -1.05
PRPF40A-201ENST00000354363 CST9LQ9H4G1 147 aa8.51□□□□□ -1.05
PRPF40A-201ENST00000354363 LINC01549A6NIU2 74 aa8.5□□□□□ -1.05
PRPF40A-201ENST00000354363 RAB5BP61020 215 aa8.5□□□□□ -1.05
PRPF40A-201ENST00000354363 MUC2Q02817 5179 aa8.49□□□□□ -1.05
PRPF40A-201ENST00000354363 KRTAP13-1Q8IUC0 172 aa8.49□□□□□ -1.05
PRPF40A-201ENST00000354363 PMVKQ15126 192 aa8.48□□□□□ -1.05
PRPF40A-201ENST00000354363 CLLU1Q5K131 121 aa8.48□□□□□ -1.05
PRPF40A-201ENST00000354363 NKAPP1Q8N9T2 125 aa8.48□□□□□ -1.05
PRPF40A-201ENST00000354363 GNB1LQ9BYB4 327 aa8.48□□□□□ -1.05
PRPF40A-201ENST00000354363 ANAPC11Q9NYG5 84 aa8.48□□□□□ -1.05
PRPF40A-201ENST00000354363 UBE2AP49459 152 aa8.47□□□□□ -1.05
PRPF40A-201ENST00000354363 KRTAP13-2Q52LG2 175 aa8.47□□□□□ -1.05
PRPF40A-201ENST00000354363 MRPL18Q9H0U6 180 aaKnown RBP8.47□□□□□ -1.05
PRPF40A-201ENST00000354363 TMEM218A2RU14 115 aa8.46□□□□□ -1.06
PRPF40A-201ENST00000354363 SCO1O75880 301 aa8.46□□□□□ -1.06
PRPF40A-201ENST00000354363 H3BRM9 83 aa8.45□□□□□ -1.06
PRPF40A-201ENST00000354363 ATP5LO75964 103 aa8.45□□□□□ -1.06
PRPF40A-201ENST00000354363 UQCC3Q6UW78 93 aa8.45□□□□□ -1.06
PRPF40A-201ENST00000354363 FA2HQ7L5A8 372 aa8.45□□□□□ -1.06
PRPF40A-201ENST00000354363 IGKV2-28A0A075B6P5 120 aa8.44□□□□□ -1.06
PRPF40A-201ENST00000354363 IGKV2D-28P01615 120 aa8.44□□□□□ -1.06
PRPF40A-201ENST00000354363 S100PP25815 95 aa8.44□□□□□ -1.06
PRPF40A-201ENST00000354363 SMCO4Q9NRQ5 59 aa8.44□□□□□ -1.06
PRPF40A-201ENST00000354363 IGLC3P0DOY3 106 aa8.43□□□□□ -1.06
PRPF40A-201ENST00000354363 PFN2P35080 140 aa8.43□□□□□ -1.06
PRPF40A-201ENST00000354363 FAM229BQ4G0N7 80 aa8.43□□□□□ -1.06
PRPF40A-201ENST00000354363 IGLV5-39A0A0G2JS06 123 aa8.43□□□□□ -1.06
PRPF40A-201ENST00000354363 COX19Q49B96 90 aa8.43□□□□□ -1.06
PRPF40A-201ENST00000354363 A0A0U1RQV1 116 aa8.42□□□□□ -1.06
PRPF40A-201ENST00000354363 FABP9Q0Z7S8 132 aa8.42□□□□□ -1.06
PRPF40A-201ENST00000354363 VPREB1P12018 145 aa8.41□□□□□ -1.06
PRPF40A-201ENST00000354363 ZNF22P17026 224 aaPredicted RBP8.41□□□□□ -1.06
PRPF40A-201ENST00000354363 PRLHP81277 87 aa8.41□□□□□ -1.06
PRPF40A-201ENST00000354363 SEC11CQ9BY50 192 aa8.41□□□□□ -1.06
PRPF40A-201ENST00000354363 A0A096LNJ9 63 aa8.4□□□□□ -1.06
PRPF40A-201ENST00000354363 LINC00304Q8N9R0 145 aa8.4□□□□□ -1.06
PRPF40A-201ENST00000354363 RETNLBQ9BQ08 111 aa8.4□□□□□ -1.06
PRPF40A-201ENST00000354363 SND1-IT1Q9HBX3 110 aa8.4□□□□□ -1.06
PRPF40A-201ENST00000354363 NDUFA6P56556 154 aa8.4□□□□□ -1.07
PRPF40A-201ENST00000354363 FAM19A1Q7Z5A9 133 aa8.4□□□□□ -1.07
PRPF40A-201ENST00000354363 TMEM126AQ9H061 195 aa8.4□□□□□ -1.07
PRPF40A-201ENST00000354363 ERG28Q9UKR5 140 aa8.4□□□□□ -1.07
PRPF40A-201ENST00000354363 TMEM238C9JI98 176 aa8.39□□□□□ -1.07
PRPF40A-201ENST00000354363 IGKV2D-26A0A0A0MRZ7 120 aa8.38□□□□□ -1.07
PRPF40A-201ENST00000354363 IFITM2Q01629 132 aa8.38□□□□□ -1.07
PRPF40A-201ENST00000354363 URB1-AS1Q96HZ7 61 aa8.38□□□□□ -1.07
PRPF40A-201ENST00000354363 M0R378 163 aa8.37□□□□□ -1.07
PRPF40A-201ENST00000354363 RPL24P83731 157 aaKnown RBP8.37□□□□□ -1.07
PRPF40A-201ENST00000354363 COX17Q14061 63 aa8.37□□□□□ -1.07
PRPF40A-201ENST00000354363 Q8NDZ9 215 aa8.37□□□□□ -1.07
PRPF40A-201ENST00000354363 ZNF625Q96I27 306 aaPredicted RBP8.37□□□□□ -1.07
PRPF40A-201ENST00000354363 MUC17Q685J3 4493 aa8.37□□□□□ -1.07
PRPF40A-201ENST00000354363 FAT4Q6V0I7 4981 aa8.36□□□□□ -1.07
PRPF40A-201ENST00000354363 LINC00614P0C842 121 aa8.36□□□□□ -1.07
PRPF40A-201ENST00000354363 C18orf32Q8TCD1 76 aa8.36□□□□□ -1.07
PRPF40A-201ENST00000354363 C11orf86A6NJI1 115 aa8.35□□□□□ -1.07
PRPF40A-201ENST00000354363 HBDP02042 147 aa8.35□□□□□ -1.07
PRPF40A-201ENST00000354363 PMCHL1Q16048 86 aa8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 81.3 ms