RNA–Protein interactions for RNA: ENST00000348990.9

APP-202, Transcript of amyloid beta precursor protein, humanhuman

TSL 1 (best) BASIC

Gene APP, Length 3,355 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
APP-202ENST00000348990 FAM19A3Q7Z5A8 133 aa12.53□□□□□ -0.4
APP-202ENST00000348990 LINC01561Q8N1V8 128 aa12.52□□□□□ -0.41
APP-202ENST00000348990 NIPBLQ6KC79 2804 aaeCLIP12.51□□□□□ -0.41
APP-202ENST00000348990 IGHV3OR16-9A0A0B4J2B5 98 aa12.51□□□□□ -0.41
APP-202ENST00000348990 TRBV6-8A0A0A6YYG3 113 aa12.51□□□□□ -0.41
APP-202ENST00000348990 NBEAL2Q6ZNJ1 2754 aa12.5□□□□□ -0.41
APP-202ENST00000348990 ENHOQ6UWT2 76 aa12.5□□□□□ -0.41
APP-202ENST00000348990 GHRHP01286 108 aa12.5□□□□□ -0.41
APP-202ENST00000348990 ACANP16112 2415 aa12.49□□□□□ -0.41
APP-202ENST00000348990 TRBV6-4A0A1B0GX49 114 aa12.49□□□□□ -0.41
APP-202ENST00000348990 CCL24O00175 119 aa12.49□□□□□ -0.41
APP-202ENST00000348990 FAM19A1Q7Z5A9 133 aa12.48□□□□□ -0.41
APP-202ENST00000348990 ZNF462Q96JM2 2506 aa12.48□□□□□ -0.41
APP-202ENST00000348990 A0A087WZ39 114 aa12.47□□□□□ -0.41
APP-202ENST00000348990 IGLV10-54A0A075B6I4 117 aa12.47□□□□□ -0.41
APP-202ENST00000348990 SS18Q15532 418 aa12.47□□□□□ -0.41
APP-202ENST00000348990 LINC00959A0A1B0GUT2 108 aa12.47□□□□□ -0.41
APP-202ENST00000348990 C16orf74Q96GX8 76 aa12.47□□□□□ -0.41
APP-202ENST00000348990 CCKP06307 115 aa12.46□□□□□ -0.41
APP-202ENST00000348990 HIVEP2P31629 2446 aa12.46□□□□□ -0.41
APP-202ENST00000348990 IGHV4-31P0DP07 118 aa12.46□□□□□ -0.41
APP-202ENST00000348990 TMEM258P61165 79 aa12.46□□□□□ -0.41
APP-202ENST00000348990 S100A7L2Q5SY68 101 aa12.46□□□□□ -0.42
APP-202ENST00000348990 C20orf197Q8N268 126 aa12.46□□□□□ -0.42
APP-202ENST00000348990 DPH3Q96FX2 82 aa12.46□□□□□ -0.42
APP-202ENST00000348990 UBL5Q9BZL1 73 aa12.46□□□□□ -0.42
APP-202ENST00000348990 LAMTOR3Q9UHA4 124 aa12.45□□□□□ -0.42
APP-202ENST00000348990 GCN1Q92616 2671 aaKnown RBP12.45□□□□□ -0.42
APP-202ENST00000348990 SETXQ7Z333 2677 aaKnown RBP12.44□□□□□ -0.42
APP-202ENST00000348990 IL17DQ8TAD2 202 aa12.44□□□□□ -0.42
APP-202ENST00000348990 GYPEP15421 78 aa12.43□□□□□ -0.42
APP-202ENST00000348990 HAMPP81172 84 aa12.43□□□□□ -0.42
APP-202ENST00000348990 JMJD7-PLA2G4BH0Y9G9 81 aa12.43□□□□□ -0.42
APP-202ENST00000348990 C9orf116Q5BN46 136 aaPredicted RBP12.43□□□□□ -0.42
APP-202ENST00000348990 TRAV25A0A0B4J276 109 aa12.41□□□□□ -0.42
APP-202ENST00000348990 TMEM256-PLSCR3K7ERE1 68 aa12.41□□□□□ -0.42
APP-202ENST00000348990 C6orf99Q4VX62 202 aa12.41□□□□□ -0.42
APP-202ENST00000348990 Q8N814 137 aa12.41□□□□□ -0.42
APP-202ENST00000348990 FHL2Q14192 279 aa12.4□□□□□ -0.42
APP-202ENST00000348990 OBSCN-AS1Q96MR7 158 aa12.4□□□□□ -0.42
APP-202ENST00000348990 UPK3BQ9BT76 320 aa12.4□□□□□ -0.42
APP-202ENST00000348990 IGSF10Q6WRI0 2623 aa12.39□□□□□ -0.43
APP-202ENST00000348990 ESM1Q9NQ30 184 aa12.39□□□□□ -0.43
APP-202ENST00000348990 RPS28P62857 69 aaKnown RBP12.39□□□□□ -0.43
APP-202ENST00000348990 LINC00269Q8N2A0 174 aa12.38□□□□□ -0.43
APP-202ENST00000348990 HRCT1Q6UXD1 115 aa12.38□□□□□ -0.43
APP-202ENST00000348990 GIG44P09565 113 aaPredicted RBP12.38□□□□□ -0.43
APP-202ENST00000348990 C4orf26Q17RF5 130 aa12.38□□□□□ -0.43
APP-202ENST00000348990 PLAC8L1A1L4L8 177 aa12.37□□□□□ -0.43
APP-202ENST00000348990 A0A096LNT2 108 aa12.36□□□□□ -0.43
APP-202ENST00000348990 KRTAP10-9P60411 292 aa12.36□□□□□ -0.43
APP-202ENST00000348990 ANGP03950 147 aaKnown RBP12.36□□□□□ -0.43
APP-202ENST00000348990 RBM3P98179 157 aaKnown RBP12.35□□□□□ -0.43
APP-202ENST00000348990 CR1P17927 2039 aa12.34□□□□□ -0.43
APP-202ENST00000348990 FSHBP01225 129 aa12.33□□□□□ -0.43
APP-202ENST00000348990 Q8IZM0 81 aa12.33□□□□□ -0.43
APP-202ENST00000348990 FLNAP21333 2647 aaKnown RBP12.33□□□□□ -0.44
APP-202ENST00000348990 OXTP01178 125 aa12.32□□□□□ -0.44
APP-202ENST00000348990 DEFB4AO15263 64 aa12.32□□□□□ -0.44
APP-202ENST00000348990 LY6G6DO95868 133 aa12.32□□□□□ -0.44
APP-202ENST00000348990 DNAJC9-AS1A6NH13 148 aa12.31□□□□□ -0.44
APP-202ENST00000348990 PRB1P04280 392 aa12.31□□□□□ -0.44
APP-202ENST00000348990 NANOS2P60321 138 aaKnown RBP12.31□□□□□ -0.44
APP-202ENST00000348990 BBC3Q96PG8 261 aaPredicted RBP12.31□□□□□ -0.44
APP-202ENST00000348990 APCP25054 2843 aa12.31□□□□□ -0.44
APP-202ENST00000348990 ATP5EP2Q5VTU8 51 aa12.3□□□□□ -0.44
APP-202ENST00000348990 Q8N3U1 123 aa12.3□□□□□ -0.44
APP-202ENST00000348990 CHCHD10Q8WYQ3 142 aaPredicted RBP12.3□□□□□ -0.44
APP-202ENST00000348990 SNURFQ9Y675 71 aa12.3□□□□□ -0.44
APP-202ENST00000348990 SCXQ7RTU7 201 aa12.3□□□□□ -0.44
APP-202ENST00000348990 CMC4P56277 68 aaPredicted RBP12.29□□□□□ -0.44
APP-202ENST00000348990 WFDC11Q8NEX6 87 aa12.29□□□□□ -0.44
APP-202ENST00000348990 ITPR3Q14573 2671 aa12.28□□□□□ -0.44
APP-202ENST00000348990 HTN3P15516 51 aa12.28□□□□□ -0.44
APP-202ENST00000348990 FAM236DA0A1B0GTK5 79 aa12.27□□□□□ -0.44
APP-202ENST00000348990 NDUFC2O95298 119 aa12.27□□□□□ -0.44
APP-202ENST00000348990 FAM236CP0DP71 79 aa12.27□□□□□ -0.44
APP-202ENST00000348990 Q6ZQY7 126 aa12.27□□□□□ -0.45
APP-202ENST00000348990 M0R2N4 97 aa12.26□□□□□ -0.45
APP-202ENST00000348990 C6orf223Q8N319 242 aa12.26□□□□□ -0.45
APP-202ENST00000348990 NOTCH2Q04721 2471 aa12.25□□□□□ -0.45
APP-202ENST00000348990 REG3AQ06141 175 aa12.25□□□□□ -0.45
APP-202ENST00000348990 DEFB113Q30KQ7 82 aa12.25□□□□□ -0.45
APP-202ENST00000348990 UNQ6190/PRO20217Q6UXQ8 127 aa12.25□□□□□ -0.45
APP-202ENST00000348990 CD164L2Q6UWJ8 174 aa12.24□□□□□ -0.45
APP-202ENST00000348990 ZNF843Q8N446 348 aa12.24□□□□□ -0.45
APP-202ENST00000348990 LINC01006Q8NI28 216 aa12.24□□□□□ -0.45
APP-202ENST00000348990 PRO0255Q9UI72 69 aa12.24□□□□□ -0.45
APP-202ENST00000348990 LINC00575Q6W349 94 aa12.24□□□□□ -0.45
APP-202ENST00000348990 CSNK1G2-AS1Q8NCQ2 148 aa12.24□□□□□ -0.45
APP-202ENST00000348990 LINC01547P58512 204 aaPredicted RBP12.22□□□□□ -0.45
APP-202ENST00000348990 XAGE1AQ9HD64 81 aa12.22□□□□□ -0.45
APP-202ENST00000348990 SPAG11BQ08648 103 aa12.22□□□□□ -0.45
APP-202ENST00000348990 Q8NDZ9 215 aa12.22□□□□□ -0.45
APP-202ENST00000348990 TRAV10A0A0B4J240 114 aa12.21□□□□□ -0.45
APP-202ENST00000348990 ZNF561-AS1K7EIQ3 104 aa12.21□□□□□ -0.45
APP-202ENST00000348990 C10orf25Q5T742 122 aa12.21□□□□□ -0.45
APP-202ENST00000348990 A0A1B0GUV1 79 aa12.21□□□□□ -0.45
APP-202ENST00000348990 Q6ZQT0 140 aa12.21□□□□□ -0.46
APP-202ENST00000348990 Q6ZVQ6 151 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms