RNA–Protein interactions for RNA: ENST00000337331.9

NPHP3-201, Transcript of nephrocystin 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPHP3, Length 4,362 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-201ENST00000337331 C6orf99Q4VX62 202 aa11.6□□□□□ -0.55
NPHP3-201ENST00000337331 FAM218AQ96MZ4 157 aa11.6□□□□□ -0.55
NPHP3-201ENST00000337331 TRBV7-6A0A0J9YX20 115 aa11.6□□□□□ -0.55
NPHP3-201ENST00000337331 BBC3Q96PG8 261 aaPredicted RBP11.6□□□□□ -0.55
NPHP3-201ENST00000337331 CCKP06307 115 aa11.59□□□□□ -0.55
NPHP3-201ENST00000337331 LINC01006Q8NI28 216 aa11.59□□□□□ -0.55
NPHP3-201ENST00000337331 VCANP13611 3396 aa11.58□□□□□ -0.56
NPHP3-201ENST00000337331 RPL28P46779 137 aaKnown RBP11.58□□□□□ -0.56
NPHP3-201ENST00000337331 NDUFC1O43677 76 aa11.58□□□□□ -0.56
NPHP3-201ENST00000337331 MIFP14174 115 aa11.58□□□□□ -0.56
NPHP3-201ENST00000337331 MUC4Q99102 2169 aa11.57□□□□□ -0.56
NPHP3-201ENST00000337331 KIF25-AS1Q9Y6Z4 181 aa11.57□□□□□ -0.56
NPHP3-201ENST00000337331 COX6A2Q02221 97 aa11.56□□□□□ -0.56
NPHP3-201ENST00000337331 IGKV2-24A0A0C4DH68 120 aa11.56□□□□□ -0.56
NPHP3-201ENST00000337331 C11orf45Q8TAV5 145 aa11.55□□□□□ -0.56
NPHP3-201ENST00000337331 INAFM1C9JVW0 142 aa11.55□□□□□ -0.56
NPHP3-201ENST00000337331 LINC00315P59091 139 aa11.55□□□□□ -0.56
NPHP3-201ENST00000337331 ODF3L2Q3SX64 289 aa11.54□□□□□ -0.56
NPHP3-201ENST00000337331 LINC01561Q8N1V8 128 aa11.54□□□□□ -0.56
NPHP3-201ENST00000337331 ANKRD17O75179 2603 aaKnown RBP11.54□□□□□ -0.56
NPHP3-201ENST00000337331 F8WDY8 70 aa11.54□□□□□ -0.56
NPHP3-201ENST00000337331 MP68P56378 58 aa11.54□□□□□ -0.56
NPHP3-201ENST00000337331 C2orf48Q96LS8 159 aa11.54□□□□□ -0.56
NPHP3-201ENST00000337331 RAI1Q7Z5J4 1906 aaPredicted RBP11.54□□□□□ -0.56
NPHP3-201ENST00000337331 UBE2AP49459 152 aa11.53□□□□□ -0.56
NPHP3-201ENST00000337331 LINC00242Q5T6M2 205 aa11.53□□□□□ -0.56
NPHP3-201ENST00000337331 LITAFQ99732 161 aa11.53□□□□□ -0.56
NPHP3-201ENST00000337331 BPY2O14599 106 aa11.53□□□□□ -0.56
NPHP3-201ENST00000337331 NDUFB1O75438 58 aa11.53□□□□□ -0.56
NPHP3-201ENST00000337331 ZNF843Q8N446 348 aa11.53□□□□□ -0.56
NPHP3-201ENST00000337331 HIGD2AQ9BW72 106 aa11.53□□□□□ -0.56
NPHP3-201ENST00000337331 ATP5EP56381 51 aaPredicted RBP11.52□□□□□ -0.56
NPHP3-201ENST00000337331 PRR4Q16378 134 aa11.52□□□□□ -0.56
NPHP3-201ENST00000337331 CDC42SE2Q9NRR3 84 aa11.52□□□□□ -0.56
NPHP3-201ENST00000337331 LINC00959A0A1B0GUT2 108 aa11.52□□□□□ -0.57
NPHP3-201ENST00000337331 DEFB131BA0A096LNP1 70 aa11.51□□□□□ -0.57
NPHP3-201ENST00000337331 Q8N3U1 123 aa11.51□□□□□ -0.57
NPHP3-201ENST00000337331 SMIM1B2RUZ4 78 aa11.51□□□□□ -0.57
NPHP3-201ENST00000337331 PMAIP1Q13794 54 aa11.51□□□□□ -0.57
NPHP3-201ENST00000337331 CD164L2Q6UWJ8 174 aa11.51□□□□□ -0.57
NPHP3-201ENST00000337331 LINC00337Q8N6G1 96 aa11.51□□□□□ -0.57
NPHP3-201ENST00000337331 CYSTM1Q9H1C7 97 aa11.51□□□□□ -0.57
NPHP3-201ENST00000337331 LINC00474Q9P2X8 69 aa11.51□□□□□ -0.57
NPHP3-201ENST00000337331 F8P00451 2351 aa11.49□□□□□ -0.57
NPHP3-201ENST00000337331 FLNBO75369 2602 aaKnown RBP11.49□□□□□ -0.57
NPHP3-201ENST00000337331 Q6ZQY7 126 aa11.49□□□□□ -0.57
NPHP3-201ENST00000337331 KRTAP10-9P60411 292 aa11.48□□□□□ -0.57
NPHP3-201ENST00000337331 PSPHP1O15172 72 aa11.48□□□□□ -0.57
NPHP3-201ENST00000337331 USP24Q9UPU5 2620 aa11.47□□□□□ -0.57
NPHP3-201ENST00000337331 CELSR3Q9NYQ7 3312 aa11.47□□□□□ -0.57
NPHP3-201ENST00000337331 A0A096LNI7 61 aa11.47□□□□□ -0.57
NPHP3-201ENST00000337331 CHCHD7Q9BUK0 85 aa11.46□□□□□ -0.57
NPHP3-201ENST00000337331 A0A087WZ39 114 aa11.46□□□□□ -0.58
NPHP3-201ENST00000337331 SYCNQ0VAF6 134 aa11.45□□□□□ -0.58
NPHP3-201ENST00000337331 ZNF575Q86XF7 245 aa11.44□□□□□ -0.58
NPHP3-201ENST00000337331 PRR3P79522 188 aaKnown RBP11.44□□□□□ -0.58
NPHP3-201ENST00000337331 FAM19A3Q7Z5A8 133 aa11.44□□□□□ -0.58
NPHP3-201ENST00000337331 Q5XG85 94 aa11.43□□□□□ -0.58
NPHP3-201ENST00000337331 NTM-AS1Q6ZSK4 140 aa11.43□□□□□ -0.58
NPHP3-201ENST00000337331 C1orf158Q8N1D5 194 aa11.43□□□□□ -0.58
NPHP3-201ENST00000337331 SPEGQ15772 3267 aa11.43□□□□□ -0.58
NPHP3-201ENST00000337331 H0Y9J4 135 aa11.42□□□□□ -0.58
NPHP3-201ENST00000337331 TMEM254Q8TBM7 123 aa11.42□□□□□ -0.58
NPHP3-201ENST00000337331 IL17DQ8TAD2 202 aa11.42□□□□□ -0.58
NPHP3-201ENST00000337331 IGKV2-28A0A075B6P5 120 aa11.42□□□□□ -0.58
NPHP3-201ENST00000337331 IGKV2D-28P01615 120 aa11.42□□□□□ -0.58
NPHP3-201ENST00000337331 KPRPQ5T749 579 aaPredicted RBP11.42□□□□□ -0.58
NPHP3-201ENST00000337331 LY6G6DO95868 133 aa11.41□□□□□ -0.58
NPHP3-201ENST00000337331 Q9UF83 564 aa11.41□□□□□ -0.58
NPHP3-201ENST00000337331 NANOS2P60321 138 aaKnown RBP11.41□□□□□ -0.58
NPHP3-201ENST00000337331 LELP1Q5T871 98 aa11.41□□□□□ -0.58
NPHP3-201ENST00000337331 ESRGQ1W209 222 aa11.4□□□□□ -0.58
NPHP3-201ENST00000337331 Q8N814 137 aa11.4□□□□□ -0.58
NPHP3-201ENST00000337331 FRYQ5TBA9 3013 aa11.4□□□□□ -0.58
NPHP3-201ENST00000337331 IGLV4-60A0A075B6I1 120 aa11.4□□□□□ -0.58
NPHP3-201ENST00000337331 LINC01547P58512 204 aaPredicted RBP11.4□□□□□ -0.58
NPHP3-201ENST00000337331 Q8IZM0 81 aa11.4□□□□□ -0.58
NPHP3-201ENST00000337331 C3orf84H3BNL1 204 aa11.39□□□□□ -0.59
NPHP3-201ENST00000337331 Q6ZSN1 163 aa11.39□□□□□ -0.59
NPHP3-201ENST00000337331 CELA1Q9UNI1 258 aa11.39□□□□□ -0.59
NPHP3-201ENST00000337331 TRAV10A0A0B4J240 114 aa11.39□□□□□ -0.59
NPHP3-201ENST00000337331 CYSRT1A8MQ03 144 aa11.38□□□□□ -0.59
NPHP3-201ENST00000337331 OXTP01178 125 aa11.38□□□□□ -0.59
NPHP3-201ENST00000337331 Q6ZVQ6 151 aa11.38□□□□□ -0.59
NPHP3-201ENST00000337331 UNQ6190/PRO20217Q6UXQ8 127 aa11.37□□□□□ -0.59
NPHP3-201ENST00000337331 PRYO14603 147 aa11.37□□□□□ -0.59
NPHP3-201ENST00000337331 C9orf129Q5T035 196 aaKnown RBP11.37□□□□□ -0.59
NPHP3-201ENST00000337331 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.37□□□□□ -0.59
NPHP3-201ENST00000337331 IGLV1-51P01701 117 aa11.36□□□□□ -0.59
NPHP3-201ENST00000337331 C9orf116Q5BN46 136 aaPredicted RBP11.36□□□□□ -0.59
NPHP3-201ENST00000337331 H7BZZ5 65 aa11.35□□□□□ -0.59
NPHP3-201ENST00000337331 LINC01600Q96MT4 127 aa11.35□□□□□ -0.59
NPHP3-201ENST00000337331 TNRC18O15417 2968 aaPredicted RBP11.35□□□□□ -0.59
NPHP3-201ENST00000337331 TRBV10-3A0A0K0K1G6 114 aa11.35□□□□□ -0.59
NPHP3-201ENST00000337331 CHKB-CPT1BH3BT56 60 aa11.35□□□□□ -0.59
NPHP3-201ENST00000337331 SMR3AQ99954 134 aa11.35□□□□□ -0.59
NPHP3-201ENST00000337331 B9D2Q9BPU9 175 aa11.35□□□□□ -0.59
NPHP3-201ENST00000337331 COL6A3P12111 3177 aa11.34□□□□□ -0.59
NPHP3-201ENST00000337331 M0R378 163 aa11.34□□□□□ -0.59
NPHP3-201ENST00000337331 IGLV5-39A0A0G2JS06 123 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms