RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 NBEAL2Q6ZNJ1 2754 aa15.31■□□□□ 0.04
SHMT1-201ENST00000316694 OR13C6PQ8NH95 151 aa15.31■□□□□ 0.04
SHMT1-201ENST00000316694 FAM236AA0A1B0GUQ0 79 aa15.31■□□□□ 0.04
SHMT1-201ENST00000316694 FAM236BA0A1B0GV22 79 aa15.31■□□□□ 0.04
SHMT1-201ENST00000316694 ATP5G1P05496 136 aa15.31■□□□□ 0.04
SHMT1-201ENST00000316694 CLPSL2Q6UWE3 100 aa15.31■□□□□ 0.04
SHMT1-201ENST00000316694 LINC00643Q86TS7 51 aa15.31■□□□□ 0.04
SHMT1-201ENST00000316694 A0A096LPF7 62 aa15.28■□□□□ 0.04
SHMT1-201ENST00000316694 IMUPQ9GZP8 106 aa15.27■□□□□ 0.03
SHMT1-201ENST00000316694 UNC79Q9P2D8 2635 aa15.27■□□□□ 0.03
SHMT1-201ENST00000316694 H0YGX0 51 aa15.26■□□□□ 0.03
SHMT1-201ENST00000316694 LECT2O14960 151 aa15.26■□□□□ 0.03
SHMT1-201ENST00000316694 SMR3AQ99954 134 aa15.26■□□□□ 0.03
SHMT1-201ENST00000316694 C9orf129Q5T035 196 aaKnown RBP15.26■□□□□ 0.03
SHMT1-201ENST00000316694 SS18Q15532 418 aa15.25■□□□□ 0.03
SHMT1-201ENST00000316694 KIR2DL5BQ8NHK3 375 aa15.25■□□□□ 0.03
SHMT1-201ENST00000316694 FASNP49327 2511 aaKnown RBP15.24■□□□□ 0.03
SHMT1-201ENST00000316694 SDIM1Q6ZPB5 146 aa15.24■□□□□ 0.03
SHMT1-201ENST00000316694 C14orf132Q9NPU4 83 aa15.24■□□□□ 0.03
SHMT1-201ENST00000316694 HILS1P60008 231 aa15.23■□□□□ 0.03
SHMT1-201ENST00000316694 HIVEP2P31629 2446 aa15.23■□□□□ 0.03
SHMT1-201ENST00000316694 SLPIP03973 132 aa15.21■□□□□ 0.03
SHMT1-201ENST00000316694 KRTAP10-3P60369 221 aa15.21■□□□□ 0.03
SHMT1-201ENST00000316694 LINC00612Q8N6U2 182 aa15.21■□□□□ 0.02
SHMT1-201ENST00000316694 VWFP04275 2813 aa15.2■□□□□ 0.02
SHMT1-201ENST00000316694 A0A1B0GUV1 79 aa15.2■□□□□ 0.02
SHMT1-201ENST00000316694 Q8IZM0 81 aa15.2■□□□□ 0.02
SHMT1-201ENST00000316694 PRO0255Q9UI72 69 aa15.19■□□□□ 0.02
SHMT1-201ENST00000316694 X6R8D5 127 aa15.19■□□□□ 0.02
SHMT1-201ENST00000316694 C3orf56Q8N813 242 aa15.19■□□□□ 0.02
SHMT1-201ENST00000316694 NCR3O14931 201 aa15.17■□□□□ 0.02
SHMT1-201ENST00000316694 PRR3P79522 188 aaKnown RBP15.17■□□□□ 0.02
SHMT1-201ENST00000316694 LY6G6DO95868 133 aa15.16■□□□□ 0.02
SHMT1-201ENST00000316694 LINC00269Q8N2A0 174 aa15.16■□□□□ 0.02
SHMT1-201ENST00000316694 DEFB4AO15263 64 aa15.16■□□□□ 0.02
SHMT1-201ENST00000316694 IGLV10-54A0A075B6I4 117 aa15.15■□□□□ 0.02
SHMT1-201ENST00000316694 LINC00482Q8N8I6 264 aa15.14■□□□□ 0.01
SHMT1-201ENST00000316694 J3QKU1 62 aa15.14■□□□□ 0.01
SHMT1-201ENST00000316694 CXCL5P42830 114 aa15.14■□□□□ 0.01
SHMT1-201ENST00000316694 Q8N3U1 123 aa15.14■□□□□ 0.01
SHMT1-201ENST00000316694 OBSCN-AS1Q96MR7 158 aa15.13■□□□□ 0.01
SHMT1-201ENST00000316694 KLK5Q9Y337 293 aaPredicted RBP15.13■□□□□ 0.01
SHMT1-201ENST00000316694 ORMDL1Q9P0S3 153 aa15.12■□□□□ 0.01
SHMT1-201ENST00000316694 NOTCH2Q04721 2471 aa15.12■□□□□ 0.01
SHMT1-201ENST00000316694 CFAP161Q6P656 301 aa15.11■□□□□ 0.01
SHMT1-201ENST00000316694 SPATA3Q8NHX4 192 aa15.11■□□□□ 0.01
SHMT1-201ENST00000316694 SMIM9A6NGZ8 99 aa15.1■□□□□ 0.01
SHMT1-201ENST00000316694 ANGP03950 147 aaKnown RBP15.1■□□□□ 0.01
SHMT1-201ENST00000316694 CHCHD10Q8WYQ3 142 aaPredicted RBP15.1■□□□□ 0.01
SHMT1-201ENST00000316694 LINC00846Q9NV44 126 aa15.1■□□□□ 0.01
SHMT1-201ENST00000316694 DEFB135Q30KP9 77 aa15.09■□□□□ 0.01
SHMT1-201ENST00000316694 C9orf116Q5BN46 136 aaPredicted RBP15.09■□□□□ 0.01
SHMT1-201ENST00000316694 CD164L2Q6UWJ8 174 aa15.09■□□□□ 0.01
SHMT1-201ENST00000316694 HECTD1Q9ULT8 2610 aa15.09■□□□□ 0.01
SHMT1-201ENST00000316694 KIAA0087Q14695 138 aa15.09■□□□□ 0.01
SHMT1-201ENST00000316694 NANOS2P60321 138 aaKnown RBP15.08■□□□□ 0.01
SHMT1-201ENST00000316694 IGKV3D-7A0A0C4DH55 119 aa15.08■□□□□ 0
SHMT1-201ENST00000316694 LINC01561Q8N1V8 128 aa15.08■□□□□ 0
SHMT1-201ENST00000316694 REG3AQ06141 175 aa15.07■□□□□ 0
SHMT1-201ENST00000316694 SMIM20Q8N5G0 67 aa15.06■□□□□ 0
SHMT1-201ENST00000316694 LYRM9A8MSI8 78 aa15.06■□□□□ 0
SHMT1-201ENST00000316694 C9orf153Q5TBE3 101 aa15.06■□□□□ 0
SHMT1-201ENST00000316694 KMT2BQ9UMN6 2715 aaPredicted RBP15.06■□□□□ 0
SHMT1-201ENST00000316694 OTOGQ6ZRI0 2925 aa15.05■□□□□ 0
SHMT1-201ENST00000316694 C3orf22Q8N5N4 141 aa15.05■□□□□ 0
SHMT1-201ENST00000316694 TENM1Q9UKZ4 2725 aa15.05■□□□□ -0
SHMT1-201ENST00000316694 COX17Q14061 63 aa15.04■□□□□ -0
SHMT1-201ENST00000316694 Q8N814 137 aa15.04■□□□□ -0
SHMT1-201ENST00000316694 TMEM126AQ9H061 195 aa15.04■□□□□ -0
SHMT1-201ENST00000316694 UQCRQO14949 82 aa15.02■□□□□ -0
SHMT1-201ENST00000316694 NDUFC2O95298 119 aa15.02■□□□□ -0
SHMT1-201ENST00000316694 DAD1P61803 113 aa15.02■□□□□ -0
SHMT1-201ENST00000316694 IGHV4-28A0A0C4DH34 117 aa15.01□□□□□ -0.01
SHMT1-201ENST00000316694 Q6JHZ5 121 aa15.01□□□□□ -0.01
SHMT1-201ENST00000316694 Q8NDZ9 215 aa15□□□□□ -0.01
SHMT1-201ENST00000316694 LINC00167Q96N53 147 aa15□□□□□ -0.01
SHMT1-201ENST00000316694 HIST1H4AP62805 103 aaKnown RBP14.99□□□□□ -0.01
SHMT1-201ENST00000316694 CCKP06307 115 aa14.99□□□□□ -0.01
SHMT1-201ENST00000316694 C6orf99Q4VX62 202 aa14.99□□□□□ -0.01
SHMT1-201ENST00000316694 HTN3P15516 51 aa14.98□□□□□ -0.01
SHMT1-201ENST00000316694 LINC00526Q96FQ7 95 aa14.98□□□□□ -0.01
SHMT1-201ENST00000316694 CELA1Q9UNI1 258 aa14.98□□□□□ -0.01
SHMT1-201ENST00000316694 A0A087WVE0 104 aa14.98□□□□□ -0.01
SHMT1-201ENST00000316694 A0A1B0GX51 115 aa14.98□□□□□ -0.01
SHMT1-201ENST00000316694 S100A7L2Q5SY68 101 aa14.98□□□□□ -0.01
SHMT1-201ENST00000316694 C9orf66Q5T8R8 295 aa14.98□□□□□ -0.01
SHMT1-201ENST00000316694 C6orf223Q8N319 242 aa14.98□□□□□ -0.01
SHMT1-201ENST00000316694 TMEM256-PLSCR3K7ERE1 68 aa14.97□□□□□ -0.01
SHMT1-201ENST00000316694 ATOX1O00244 68 aa14.97□□□□□ -0.01
SHMT1-201ENST00000316694 COX7CP15954 63 aa14.97□□□□□ -0.01
SHMT1-201ENST00000316694 C10orf25Q5T742 122 aa14.97□□□□□ -0.01
SHMT1-201ENST00000316694 JMJD7-PLA2G4BH0Y9G9 81 aa14.96□□□□□ -0.01
SHMT1-201ENST00000316694 UNQ6190/PRO20217Q6UXQ8 127 aa14.96□□□□□ -0.01
SHMT1-201ENST00000316694 TRRAPQ9Y4A5 3859 aa14.96□□□□□ -0.02
SHMT1-201ENST00000316694 SVIPQ8NHG7 77 aa14.95□□□□□ -0.02
SHMT1-201ENST00000316694 INAFM1C9JVW0 142 aa14.94□□□□□ -0.02
SHMT1-201ENST00000316694 APOC4P55056 127 aa14.94□□□□□ -0.02
SHMT1-201ENST00000316694 SPAG11BQ08648 103 aa14.94□□□□□ -0.02
SHMT1-201ENST00000316694 NSD1Q96L73 2696 aaPredicted RBP14.94□□□□□ -0.02
SHMT1-201ENST00000316694 RPL18AQ02543 176 aaKnown RBP14.94□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms