RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 KRTAP11-1Q8IUC1 163 aa12.2□□□□□ -0.46
PDZRN3-202ENST00000308537 SPINK6Q6UWN8 80 aa12.19□□□□□ -0.46
PDZRN3-202ENST00000308537 C18orf32Q8TCD1 76 aa12.19□□□□□ -0.46
PDZRN3-202ENST00000308537 PSORS1C2Q9UIG4 136 aa12.19□□□□□ -0.46
PDZRN3-202ENST00000308537 HERVK_113P63121 156 aa12.18□□□□□ -0.46
PDZRN3-202ENST00000308537 YPEL4Q96NS1 127 aa12.18□□□□□ -0.46
PDZRN3-202ENST00000308537 GEMIN7Q9H840 131 aaKnown RBP12.18□□□□□ -0.46
PDZRN3-202ENST00000308537 TRBV30A0A0K0K1B3 111 aa12.17□□□□□ -0.46
PDZRN3-202ENST00000308537 CBLN2Q8IUK8 224 aa12.17□□□□□ -0.46
PDZRN3-202ENST00000308537 CDKN2A-AS1Q9UH64 79 aa12.16□□□□□ -0.46
PDZRN3-202ENST00000308537 KRTAP10-8P60410 259 aa12.15□□□□□ -0.46
PDZRN3-202ENST00000308537 HBDP02042 147 aa12.14□□□□□ -0.47
PDZRN3-202ENST00000308537 ODF1Q14990 250 aa12.14□□□□□ -0.47
PDZRN3-202ENST00000308537 C9orf129Q5T035 196 aaKnown RBP12.14□□□□□ -0.47
PDZRN3-202ENST00000308537 PACRGQ96M98 296 aaPredicted RBP12.14□□□□□ -0.47
PDZRN3-202ENST00000308537 PLA2G2DQ9UNK4 145 aa12.14□□□□□ -0.47
PDZRN3-202ENST00000308537 NDUFC2-KCTD14E9PQ53 114 aa12.13□□□□□ -0.47
PDZRN3-202ENST00000308537 PRSS2P07478 247 aa12.13□□□□□ -0.47
PDZRN3-202ENST00000308537 PMVKQ15126 192 aa12.13□□□□□ -0.47
PDZRN3-202ENST00000308537 GAGE2EQ4V326 116 aa12.13□□□□□ -0.47
PDZRN3-202ENST00000308537 Q8IZM0 81 aa12.13□□□□□ -0.47
PDZRN3-202ENST00000308537 GAGE2DQ9UEU5 116 aa12.13□□□□□ -0.47
PDZRN3-202ENST00000308537 UBR4Q5T4S7 5183 aa12.12□□□□□ -0.47
PDZRN3-202ENST00000308537 IGLV5-45A0A087WSX0 123 aa12.11□□□□□ -0.47
PDZRN3-202ENST00000308537 ATP5LO75964 103 aa12.11□□□□□ -0.47
PDZRN3-202ENST00000308537 CHCHD1Q96BP2 118 aaKnown RBP12.11□□□□□ -0.47
PDZRN3-202ENST00000308537 URB1-AS1Q96HZ7 61 aa12.11□□□□□ -0.47
PDZRN3-202ENST00000308537 CST9LQ9H4G1 147 aa12.11□□□□□ -0.47
PDZRN3-202ENST00000308537 A0A096LNJ9 63 aa12.1□□□□□ -0.47
PDZRN3-202ENST00000308537 TINCRA0A1B0GVN0 87 aa12.1□□□□□ -0.47
PDZRN3-202ENST00000308537 FAM19A5Q7Z5A7 132 aaPredicted RBP12.1□□□□□ -0.47
PDZRN3-202ENST00000308537 LINC00469Q8N7U9 141 aa12.09□□□□□ -0.47
PDZRN3-202ENST00000308537 LRP2P98164 4655 aa12.09□□□□□ -0.47
PDZRN3-202ENST00000308537 SMIM1B2RUZ4 78 aa12.08□□□□□ -0.48
PDZRN3-202ENST00000308537 NDUFA6P56556 154 aa12.08□□□□□ -0.48
PDZRN3-202ENST00000308537 CKS1BP61024 79 aa12.08□□□□□ -0.48
PDZRN3-202ENST00000308537 C6orf226Q5I0X4 101 aa12.08□□□□□ -0.48
PDZRN3-202ENST00000308537 C1orf137Q5JT78 98 aa12.08□□□□□ -0.48
PDZRN3-202ENST00000308537 BAGE3Q86Y29 109 aa12.08□□□□□ -0.48
PDZRN3-202ENST00000308537 TOMM7Q9P0U1 55 aa12.08□□□□□ -0.48
PDZRN3-202ENST00000308537 TRGC2P03986 189 aa12.07□□□□□ -0.48
PDZRN3-202ENST00000308537 REG3GQ6UW15 175 aa12.07□□□□□ -0.48
PDZRN3-202ENST00000308537 H3BRM9 83 aa12.06□□□□□ -0.48
PDZRN3-202ENST00000308537 IGLV7-43P04211 117 aa12.06□□□□□ -0.48
PDZRN3-202ENST00000308537 M0QXV9 152 aa12.05□□□□□ -0.48
PDZRN3-202ENST00000308537 HSBP1O75506 76 aa12.05□□□□□ -0.48
PDZRN3-202ENST00000308537 PMCHL1Q16048 86 aa12.05□□□□□ -0.48
PDZRN3-202ENST00000308537 PDZD11Q5EBL8 140 aa12.05□□□□□ -0.48
PDZRN3-202ENST00000308537 COLCA2A8K830 154 aa12.03□□□□□ -0.48
PDZRN3-202ENST00000308537 F8VRH5 84 aa12.03□□□□□ -0.48
PDZRN3-202ENST00000308537 CXCL5P42830 114 aa12.03□□□□□ -0.48
PDZRN3-202ENST00000308537 IGLC3P0DOY3 106 aa12.01□□□□□ -0.49
PDZRN3-202ENST00000308537 XAGE1AQ9HD64 81 aa12.01□□□□□ -0.49
PDZRN3-202ENST00000308537 SPINK8P0C7L1 97 aa11.99□□□□□ -0.49
PDZRN3-202ENST00000308537 COX7B2Q8TF08 81 aa11.99□□□□□ -0.49
PDZRN3-202ENST00000308537 IFI27L1Q96BM0 104 aa11.99□□□□□ -0.49
PDZRN3-202ENST00000308537 KRTAP1-4P0C5Y4 121 aa11.98□□□□□ -0.49
PDZRN3-202ENST00000308537 IGLV5-39A0A0G2JS06 123 aa11.97□□□□□ -0.49
PDZRN3-202ENST00000308537 H0Y9J4 135 aa11.97□□□□□ -0.49
PDZRN3-202ENST00000308537 C22orf24Q9Y442 160 aa11.97□□□□□ -0.49
PDZRN3-202ENST00000308537 TRAV12-1A0A0B4J245 112 aa11.96□□□□□ -0.49
PDZRN3-202ENST00000308537 CHTOPQ9Y3Y2 248 aaKnown RBP11.96□□□□□ -0.49
PDZRN3-202ENST00000308537 UBE2BP63146 152 aa11.95□□□□□ -0.5
PDZRN3-202ENST00000308537 DIRC1Q969H9 104 aa11.95□□□□□ -0.5
PDZRN3-202ENST00000308537 SERF1AO75920 110 aa11.94□□□□□ -0.5
PDZRN3-202ENST00000308537 LEPROTL1O95214 131 aa11.94□□□□□ -0.5
PDZRN3-202ENST00000308537 ZNF22P17026 224 aaPredicted RBP11.94□□□□□ -0.5
PDZRN3-202ENST00000308537 TMEM170BQ5T4T1 132 aa11.94□□□□□ -0.5
PDZRN3-202ENST00000308537 FAM19A2Q8N3H0 131 aa11.94□□□□□ -0.5
PDZRN3-202ENST00000308537 HSPB8Q9UJY1 196 aa11.94□□□□□ -0.5
PDZRN3-202ENST00000308537 TP73-AS1Q9UF72 201 aa11.93□□□□□ -0.5
PDZRN3-202ENST00000308537 SCO1O75880 301 aa11.92□□□□□ -0.5
PDZRN3-202ENST00000308537 PRR26Q8N8Z3 221 aa11.92□□□□□ -0.5
PDZRN3-202ENST00000308537 SFTA2Q6UW10 78 aa11.91□□□□□ -0.5
PDZRN3-202ENST00000308537 C11orf86A6NJI1 115 aa11.9□□□□□ -0.5
PDZRN3-202ENST00000308537 MRPL55Q7Z7F7 128 aaKnown RBP11.89□□□□□ -0.51
PDZRN3-202ENST00000308537 IGLV5-37A0A075B6J1 123 aa11.88□□□□□ -0.51
PDZRN3-202ENST00000308537 ZNF861PO60384 105 aa11.88□□□□□ -0.51
PDZRN3-202ENST00000308537 LPAP08519 4548 aa11.88□□□□□ -0.51
PDZRN3-202ENST00000308537 NUPR1O60356 82 aa11.87□□□□□ -0.51
PDZRN3-202ENST00000308537 LBHQ53QV2 105 aaPredicted RBP11.87□□□□□ -0.51
PDZRN3-202ENST00000308537 LINC00167Q96N53 147 aa11.87□□□□□ -0.51
PDZRN3-202ENST00000308537 S100A1P23297 94 aa11.86□□□□□ -0.51
PDZRN3-202ENST00000308537 H0Y8G0 127 aa11.85□□□□□ -0.51
PDZRN3-202ENST00000308537 FABP4P15090 132 aa11.85□□□□□ -0.51
PDZRN3-202ENST00000308537 LINC00310P59036 64 aa11.85□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST1H2BKO60814 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST1H2BJP06899 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST1H2BOP23527 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST1H2BBP33778 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST1H2BDP58876 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST1H2BCP62807 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST2H2BEQ16778 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST1H2BHQ93079 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST1H2BNQ99877 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 HIST1H2BMQ99879 126 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 MAP1LC3CQ9BXW4 147 aa11.84□□□□□ -0.51
PDZRN3-202ENST00000308537 IGLV1-50A0A075B6I6 118 aa11.83□□□□□ -0.52
PDZRN3-202ENST00000308537 PLNP26678 52 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms