RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 SMCPP49901 116 aaPredicted RBP12.4□□□□□ -0.42
SYNPO-201ENST00000307662 TRBV7-6A0A0J9YX20 115 aa12.39□□□□□ -0.43
SYNPO-201ENST00000307662 BEAN1Q3B7T3 259 aa12.39□□□□□ -0.43
SYNPO-201ENST00000307662 LINC01547P58512 204 aaPredicted RBP12.39□□□□□ -0.43
SYNPO-201ENST00000307662 CCDC168Q8NDH2 2452 aa12.39□□□□□ -0.43
SYNPO-201ENST00000307662 Q6ZSN1 163 aa12.38□□□□□ -0.43
SYNPO-201ENST00000307662 C2CD3Q4AC94 2353 aa12.38□□□□□ -0.43
SYNPO-201ENST00000307662 BRI3O95415 125 aa12.38□□□□□ -0.43
SYNPO-201ENST00000307662 HIVEP3Q5T1R4 2406 aa12.38□□□□□ -0.43
SYNPO-201ENST00000307662 INAFM1C9JVW0 142 aa12.38□□□□□ -0.43
SYNPO-201ENST00000307662 PRO0461Q9UI25 63 aa12.37□□□□□ -0.43
SYNPO-201ENST00000307662 FHL2Q14192 279 aa12.37□□□□□ -0.43
SYNPO-201ENST00000307662 LINC00337Q8N6G1 96 aa12.37□□□□□ -0.43
SYNPO-201ENST00000307662 ESRGQ1W209 222 aa12.36□□□□□ -0.43
SYNPO-201ENST00000307662 CRYGAP11844 174 aa12.36□□□□□ -0.43
SYNPO-201ENST00000307662 C7orf33Q8WU49 177 aa12.36□□□□□ -0.43
SYNPO-201ENST00000307662 MYO18BQ8IUG5 2567 aa12.35□□□□□ -0.43
SYNPO-201ENST00000307662 PRO0628Q9UI54 55 aa12.35□□□□□ -0.43
SYNPO-201ENST00000307662 TLN1Q9Y490 2541 aaKnown RBP12.35□□□□□ -0.43
SYNPO-201ENST00000307662 AVPP01185 164 aa12.35□□□□□ -0.43
SYNPO-201ENST00000307662 KIF25-AS1Q9Y6Z4 181 aa12.35□□□□□ -0.43
SYNPO-201ENST00000307662 CXCL6P80162 114 aa12.34□□□□□ -0.43
SYNPO-201ENST00000307662 REG3GQ6UW15 175 aa12.33□□□□□ -0.43
SYNPO-201ENST00000307662 SHISA2Q6UWI4 295 aa12.33□□□□□ -0.44
SYNPO-201ENST00000307662 LINC00474Q9P2X8 69 aa12.32□□□□□ -0.44
SYNPO-201ENST00000307662 LINC01561Q8N1V8 128 aa12.32□□□□□ -0.44
SYNPO-201ENST00000307662 COL5A1P20908 1838 aaPredicted RBP12.32□□□□□ -0.44
SYNPO-201ENST00000307662 A0A1B0GUV1 79 aa12.31□□□□□ -0.44
SYNPO-201ENST00000307662 IGLV5-39A0A0G2JS06 123 aa12.3□□□□□ -0.44
SYNPO-201ENST00000307662 H0Y9P7 68 aa12.3□□□□□ -0.44
SYNPO-201ENST00000307662 C6orf223Q8N319 242 aa12.3□□□□□ -0.44
SYNPO-201ENST00000307662 LY6G6DO95868 133 aa12.29□□□□□ -0.44
SYNPO-201ENST00000307662 CPAMD8Q8IZJ3 1885 aa12.29□□□□□ -0.44
SYNPO-201ENST00000307662 RPS28P62857 69 aaKnown RBP12.28□□□□□ -0.44
SYNPO-201ENST00000307662 MYO9AB2RTY4 2548 aa12.28□□□□□ -0.44
SYNPO-201ENST00000307662 PCOTHQ58A44 107 aa12.28□□□□□ -0.44
SYNPO-201ENST00000307662 A8MTW9 85 aa12.27□□□□□ -0.44
SYNPO-201ENST00000307662 HCG22E2RYF7 251 aa12.27□□□□□ -0.44
SYNPO-201ENST00000307662 IGLV1-51P01701 117 aa12.27□□□□□ -0.44
SYNPO-201ENST00000307662 RETNQ9HD89 108 aa12.27□□□□□ -0.44
SYNPO-201ENST00000307662 WDR87Q6ZQQ6 2873 aa12.26□□□□□ -0.45
SYNPO-201ENST00000307662 hDV103S1A0JD37 113 aa12.26□□□□□ -0.45
SYNPO-201ENST00000307662 SBSPONQ8IVN8 264 aa12.26□□□□□ -0.45
SYNPO-201ENST00000307662 F8WDY8 70 aa12.26□□□□□ -0.45
SYNPO-201ENST00000307662 A0A087WSZ3 146 aa12.25□□□□□ -0.45
SYNPO-201ENST00000307662 A0A1W2PPR1 153 aa12.25□□□□□ -0.45
SYNPO-201ENST00000307662 IGHV6-1A0A0B4J1U7 121 aa12.25□□□□□ -0.45
SYNPO-201ENST00000307662 BCE1O60756 84 aa12.25□□□□□ -0.45
SYNPO-201ENST00000307662 Q8N2B8 174 aa12.24□□□□□ -0.45
SYNPO-201ENST00000307662 Q9BRP9 147 aa12.24□□□□□ -0.45
SYNPO-201ENST00000307662 ABCA2Q9BZC7 2435 aa12.24□□□□□ -0.45
SYNPO-201ENST00000307662 C2orf48Q96LS8 159 aa12.23□□□□□ -0.45
SYNPO-201ENST00000307662 LINC00315P59091 139 aa12.23□□□□□ -0.45
SYNPO-201ENST00000307662 C4orf26Q17RF5 130 aa12.22□□□□□ -0.45
SYNPO-201ENST00000307662 DEFB116Q30KQ4 102 aa12.21□□□□□ -0.46
SYNPO-201ENST00000307662 M0R2N4 97 aa12.19□□□□□ -0.46
SYNPO-201ENST00000307662 SPATA3Q8NHX4 192 aa12.19□□□□□ -0.46
SYNPO-201ENST00000307662 LIMD2Q9BT23 127 aa12.19□□□□□ -0.46
SYNPO-201ENST00000307662 PRRC2AP48634 2157 aaKnown RBP12.19□□□□□ -0.46
SYNPO-201ENST00000307662 FAM218AQ96MZ4 157 aa12.18□□□□□ -0.46
SYNPO-201ENST00000307662 SMIM29Q86T20 159 aa12.18□□□□□ -0.46
SYNPO-201ENST00000307662 KRTAP10-9P60411 292 aa12.17□□□□□ -0.46
SYNPO-201ENST00000307662 FAM19A4Q96LR4 140 aa12.17□□□□□ -0.46
SYNPO-201ENST00000307662 EXPH5Q8NEV8 1989 aa12.17□□□□□ -0.46
SYNPO-201ENST00000307662 C11orf72Q8NBR9 251 aa12.16□□□□□ -0.46
SYNPO-201ENST00000307662 IGLV5-45A0A087WSX0 123 aa12.16□□□□□ -0.46
SYNPO-201ENST00000307662 IGHV3OR16-9A0A0B4J2B5 98 aa12.16□□□□□ -0.46
SYNPO-201ENST00000307662 Q6ZRU5 148 aa12.15□□□□□ -0.46
SYNPO-201ENST00000307662 C1orf64Q8NEQ6 169 aa12.15□□□□□ -0.46
SYNPO-201ENST00000307662 AGRNO00468 2067 aa12.14□□□□□ -0.47
SYNPO-201ENST00000307662 CIRBP-AS1Q8TBR5 109 aa12.14□□□□□ -0.47
SYNPO-201ENST00000307662 LYPD5Q6UWN5 251 aa12.13□□□□□ -0.47
SYNPO-201ENST00000307662 RAI1Q7Z5J4 1906 aaPredicted RBP12.13□□□□□ -0.47
SYNPO-201ENST00000307662 OXLD1Q5BKU9 147 aa12.12□□□□□ -0.47
SYNPO-201ENST00000307662 Q6ZTC4 211 aa12.12□□□□□ -0.47
SYNPO-201ENST00000307662 KIAA0087Q14695 138 aa12.11□□□□□ -0.47
SYNPO-201ENST00000307662 PLA2G2AP14555 144 aa12.1□□□□□ -0.47
SYNPO-201ENST00000307662 Q9UF83 564 aa12.1□□□□□ -0.47
SYNPO-201ENST00000307662 ADAMTS20P59510 1910 aa12.09□□□□□ -0.47
SYNPO-201ENST00000307662 RETNLBQ9BQ08 111 aa12.08□□□□□ -0.48
SYNPO-201ENST00000307662 Q6ZQT0 140 aa12.08□□□□□ -0.48
SYNPO-201ENST00000307662 C16orf95Q9H693 158 aa12.08□□□□□ -0.48
SYNPO-201ENST00000307662 TET2Q6N021 2002 aaPredicted RBP12.07□□□□□ -0.48
SYNPO-201ENST00000307662 LOC110117498A0A087WWA1 95 aa12.07□□□□□ -0.48
SYNPO-201ENST00000307662 PRLHP81277 87 aa12.05□□□□□ -0.48
SYNPO-201ENST00000307662 C22orf24Q9Y442 160 aa12.05□□□□□ -0.48
SYNPO-201ENST00000307662 SPINK1P00995 79 aa12.05□□□□□ -0.48
SYNPO-201ENST00000307662 A0A1B0GW54 56 aa12.04□□□□□ -0.48
SYNPO-201ENST00000307662 SMR3AQ99954 134 aa12.04□□□□□ -0.48
SYNPO-201ENST00000307662 CEP295Q9C0D2 2601 aa12.04□□□□□ -0.48
SYNPO-201ENST00000307662 SMCR5Q8TEV8 140 aa12.04□□□□□ -0.48
SYNPO-201ENST00000307662 LINC01556Q5JQF7 62 aa12.03□□□□□ -0.48
SYNPO-201ENST00000307662 USP9XQ93008 2570 aaPredicted RBP12.02□□□□□ -0.48
SYNPO-201ENST00000307662 ELOF1P60002 83 aaKnown RBP12.01□□□□□ -0.49
SYNPO-201ENST00000307662 TM2D3Q9BRN9 247 aa12□□□□□ -0.49
SYNPO-201ENST00000307662 LITAFQ99732 161 aa12□□□□□ -0.49
SYNPO-201ENST00000307662 TP53AIP1Q9HCN2 124 aa11.99□□□□□ -0.49
SYNPO-201ENST00000307662 ANKRD11Q6UB99 2663 aaPredicted RBP11.99□□□□□ -0.49
SYNPO-201ENST00000307662 C6orf48Q9UBA6 75 aa11.99□□□□□ -0.49
SYNPO-201ENST00000307662 LY6G6CO95867 125 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms