RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 CEND1Q8N111 149 aa9.88□□□□□ -0.83
C9orf3-202ENST00000297979 SPANXCQ9NY87 97 aa9.88□□□□□ -0.83
C9orf3-202ENST00000297979 A0A0J9YWU9 116 aa9.87□□□□□ -0.83
C9orf3-202ENST00000297979 PRO0461Q9UI25 63 aa9.87□□□□□ -0.83
C9orf3-202ENST00000297979 TMEM262E9PQX1 116 aa9.87□□□□□ -0.83
C9orf3-202ENST00000297979 H3BMG7 143 aa9.87□□□□□ -0.83
C9orf3-202ENST00000297979 A0A1B0GUV1 79 aa9.86□□□□□ -0.83
C9orf3-202ENST00000297979 PFN2P35080 140 aa9.86□□□□□ -0.83
C9orf3-202ENST00000297979 FXYD2P54710 66 aa9.86□□□□□ -0.83
C9orf3-202ENST00000297979 DPH3Q96FX2 82 aa9.86□□□□□ -0.83
C9orf3-202ENST00000297979 Q6ZTC4 211 aa9.85□□□□□ -0.83
C9orf3-202ENST00000297979 IGKV3OR2-268A0A0C4DH90 116 aa9.84□□□□□ -0.83
C9orf3-202ENST00000297979 DEFB121Q5J5C9 76 aa9.84□□□□□ -0.83
C9orf3-202ENST00000297979 H3BNG1 76 aa9.83□□□□□ -0.84
C9orf3-202ENST00000297979 TM2D3Q9BRN9 247 aa9.83□□□□□ -0.84
C9orf3-202ENST00000297979 SRSF9Q13242 221 aaKnown RBP eCLIP9.83□□□□□ -0.84
C9orf3-202ENST00000297979 IGLV5-39A0A0G2JS06 123 aa9.83□□□□□ -0.84
C9orf3-202ENST00000297979 SMIM1B2RUZ4 78 aa9.83□□□□□ -0.84
C9orf3-202ENST00000297979 LELP1Q5T871 98 aa9.83□□□□□ -0.84
C9orf3-202ENST00000297979 NDUFA12Q9UI09 145 aa9.83□□□□□ -0.84
C9orf3-202ENST00000297979 LINC01561Q8N1V8 128 aa9.82□□□□□ -0.84
C9orf3-202ENST00000297979 C3orf22Q8N5N4 141 aa9.82□□□□□ -0.84
C9orf3-202ENST00000297979 NANOS2P60321 138 aaKnown RBP9.82□□□□□ -0.84
C9orf3-202ENST00000297979 NOTCH1P46531 2555 aa9.81□□□□□ -0.84
C9orf3-202ENST00000297979 A0A0J9YXY3 114 aa9.81□□□□□ -0.84
C9orf3-202ENST00000297979 LINC00959A0A1B0GUT2 108 aa9.81□□□□□ -0.84
C9orf3-202ENST00000297979 PMAIP1Q13794 54 aa9.81□□□□□ -0.84
C9orf3-202ENST00000297979 NHP2Q9NX24 153 aaKnown RBP9.8□□□□□ -0.84
C9orf3-202ENST00000297979 SMIM13P0DJ93 91 aa9.79□□□□□ -0.84
C9orf3-202ENST00000297979 NDUFA1O15239 70 aa9.79□□□□□ -0.84
C9orf3-202ENST00000297979 LYPD5Q6UWN5 251 aa9.79□□□□□ -0.84
C9orf3-202ENST00000297979 DEFB131BA0A096LNP1 70 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 IGHV3OR16-9A0A0B4J2B5 98 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 SS18Q15532 418 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 GAGE2AQ6NT46 116 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 IGHV3-30P01768 117 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 IGHV3-30-5P0DP03 117 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 CLPSL2Q6UWE3 100 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 K7ERJ3 54 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 ANGP03950 147 aaKnown RBP9.78□□□□□ -0.84
C9orf3-202ENST00000297979 Q8N3U1 123 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 PPDPFLQ8WWR9 84 aa9.78□□□□□ -0.84
C9orf3-202ENST00000297979 LINC00269Q8N2A0 174 aa9.77□□□□□ -0.85
C9orf3-202ENST00000297979 LINC00526Q96FQ7 95 aa9.77□□□□□ -0.85
C9orf3-202ENST00000297979 TENM3Q9P273 2699 aa9.77□□□□□ -0.85
C9orf3-202ENST00000297979 UQCRQO14949 82 aa9.76□□□□□ -0.85
C9orf3-202ENST00000297979 NBEAL1Q6ZS30 2694 aa9.76□□□□□ -0.85
C9orf3-202ENST00000297979 A0A087WZ39 114 aa9.76□□□□□ -0.85
C9orf3-202ENST00000297979 LITAFQ99732 161 aa9.76□□□□□ -0.85
C9orf3-202ENST00000297979 Q9H8V8 135 aa9.76□□□□□ -0.85
C9orf3-202ENST00000297979 XCL1P47992 114 aa9.75□□□□□ -0.85
C9orf3-202ENST00000297979 DSCR8Q96T75 97 aa9.75□□□□□ -0.85
C9orf3-202ENST00000297979 REG3AQ06141 175 aa9.75□□□□□ -0.85
C9orf3-202ENST00000297979 TIMM17BO60830 172 aa9.74□□□□□ -0.85
C9orf3-202ENST00000297979 C5orf38Q86SI9 138 aa9.74□□□□□ -0.85
C9orf3-202ENST00000297979 SMCPP49901 116 aaPredicted RBP9.74□□□□□ -0.85
C9orf3-202ENST00000297979 ZNF625Q96I27 306 aaPredicted RBP9.74□□□□□ -0.85
C9orf3-202ENST00000297979 MGAM2Q2M2H8 2515 aa9.73□□□□□ -0.85
C9orf3-202ENST00000297979 TRAV10A0A0B4J240 114 aa9.73□□□□□ -0.85
C9orf3-202ENST00000297979 COX7B2Q8TF08 81 aa9.73□□□□□ -0.85
C9orf3-202ENST00000297979 SPANXDQ9BXN6 97 aa9.73□□□□□ -0.85
C9orf3-202ENST00000297979 ADAMTSL4-AS1Q5T5F5 129 aa9.72□□□□□ -0.85
C9orf3-202ENST00000297979 MUSTN1Q8IVN3 82 aa9.72□□□□□ -0.85
C9orf3-202ENST00000297979 BRK1Q8WUW1 75 aa9.72□□□□□ -0.85
C9orf3-202ENST00000297979 TOMM7Q9P0U1 55 aa9.72□□□□□ -0.85
C9orf3-202ENST00000297979 RPL13AP40429 203 aaKnown RBP9.71□□□□□ -0.85
C9orf3-202ENST00000297979 CIRBPQ14011 172 aaKnown RBP9.71□□□□□ -0.85
C9orf3-202ENST00000297979 MIAQ16674 131 aa9.71□□□□□ -0.85
C9orf3-202ENST00000297979 CD164L2Q6UWJ8 174 aa9.71□□□□□ -0.85
C9orf3-202ENST00000297979 CHCHD10Q8WYQ3 142 aaPredicted RBP9.71□□□□□ -0.85
C9orf3-202ENST00000297979 ESRGQ1W209 222 aa9.7□□□□□ -0.86
C9orf3-202ENST00000297979 WFDC10BQ8IUB3 73 aa9.7□□□□□ -0.86
C9orf3-202ENST00000297979 KLK12Q9UKR0 248 aa9.7□□□□□ -0.86
C9orf3-202ENST00000297979 IGLV10-54A0A075B6I4 117 aa9.7□□□□□ -0.86
C9orf3-202ENST00000297979 PRR34Q9NV39 138 aa9.7□□□□□ -0.86
C9orf3-202ENST00000297979 IGHV3-33P01772 117 aa9.69□□□□□ -0.86
C9orf3-202ENST00000297979 PRSS2P07478 247 aa9.69□□□□□ -0.86
C9orf3-202ENST00000297979 ANKRD29Q8N6D5 301 aa9.69□□□□□ -0.86
C9orf3-202ENST00000297979 TMEM258P61165 79 aa9.69□□□□□ -0.86
C9orf3-202ENST00000297979 HUWE1Q7Z6Z7 4374 aaKnown RBP9.69□□□□□ -0.86
C9orf3-202ENST00000297979 IGLL5B9A064 214 aa9.69□□□□□ -0.86
C9orf3-202ENST00000297979 COX7A2LO14548 114 aa9.69□□□□□ -0.86
C9orf3-202ENST00000297979 C15orf53Q8NAA6 179 aa9.69□□□□□ -0.86
C9orf3-202ENST00000297979 CFC1BP0CG36 223 aa9.68□□□□□ -0.86
C9orf3-202ENST00000297979 CFC1P0CG37 223 aa9.68□□□□□ -0.86
C9orf3-202ENST00000297979 TEN1Q86WV5 123 aa9.68□□□□□ -0.86
C9orf3-202ENST00000297979 NDUFC2O95298 119 aa9.67□□□□□ -0.86
C9orf3-202ENST00000297979 B9D2Q9BPU9 175 aa9.67□□□□□ -0.86
C9orf3-202ENST00000297979 CRPP02741 224 aa9.67□□□□□ -0.86
C9orf3-202ENST00000297979 CRYGAP11844 174 aa9.67□□□□□ -0.86
C9orf3-202ENST00000297979 SFTA2Q6UW10 78 aa9.67□□□□□ -0.86
C9orf3-202ENST00000297979 ENHOQ6UWT2 76 aa9.67□□□□□ -0.86
C9orf3-202ENST00000297979 DAND5Q8N907 189 aa9.67□□□□□ -0.86
C9orf3-202ENST00000297979 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.66□□□□□ -0.86
C9orf3-202ENST00000297979 TRACP01848 142 aa9.66□□□□□ -0.86
C9orf3-202ENST00000297979 NPC2P61916 151 aa9.66□□□□□ -0.86
C9orf3-202ENST00000297979 Q8IZM0 81 aa9.66□□□□□ -0.86
C9orf3-202ENST00000297979 VPREB1P12018 145 aa9.65□□□□□ -0.86
C9orf3-202ENST00000297979 PRR26Q8N8Z3 221 aa9.65□□□□□ -0.86
C9orf3-202ENST00000297979 A0A0B4J2C4 111 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 152.9 ms