RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 KIF25-AS1Q9Y6Z4 181 aa11.09□□□□□ -0.63
SHH-201ENST00000297261 DEFB135Q30KP9 77 aa11.09□□□□□ -0.63
SHH-201ENST00000297261 CHCHD10Q8WYQ3 142 aaPredicted RBP11.09□□□□□ -0.63
SHH-201ENST00000297261 CDC42SE2Q9NRR3 84 aa11.09□□□□□ -0.63
SHH-201ENST00000297261 ATMQ13315 3056 aa11.08□□□□□ -0.63
SHH-201ENST00000297261 CHCHD7Q9BUK0 85 aa11.08□□□□□ -0.64
SHH-201ENST00000297261 A0A087WYN8 130 aa11.08□□□□□ -0.64
SHH-201ENST00000297261 HECTD1Q9ULT8 2610 aa11.08□□□□□ -0.64
SHH-201ENST00000297261 REG3AQ06141 175 aa11.07□□□□□ -0.64
SHH-201ENST00000297261 NDUFC2-KCTD14E9PQ53 114 aa11.07□□□□□ -0.64
SHH-201ENST00000297261 CSDC2Q9Y534 153 aaKnown RBP11.06□□□□□ -0.64
SHH-201ENST00000297261 IGSF10Q6WRI0 2623 aa11.06□□□□□ -0.64
SHH-201ENST00000297261 TRBV7-7A0A0K0K1E9 115 aa11.06□□□□□ -0.64
SHH-201ENST00000297261 H3BQ85 93 aa11.06□□□□□ -0.64
SHH-201ENST00000297261 MP68P56378 58 aa11.06□□□□□ -0.64
SHH-201ENST00000297261 RPL28P46779 137 aaKnown RBP11.06□□□□□ -0.64
SHH-201ENST00000297261 LINC00846Q9NV44 126 aa11.05□□□□□ -0.64
SHH-201ENST00000297261 HILS1P60008 231 aa11.05□□□□□ -0.64
SHH-201ENST00000297261 FHL3Q13643 280 aa11.05□□□□□ -0.64
SHH-201ENST00000297261 LINC00315P59091 139 aa11.05□□□□□ -0.64
SHH-201ENST00000297261 PRR3P79522 188 aaKnown RBP11.04□□□□□ -0.64
SHH-201ENST00000297261 SPART-AS1P0CW21 52 aa11.04□□□□□ -0.64
SHH-201ENST00000297261 Q6ZSN1 163 aa11.04□□□□□ -0.64
SHH-201ENST00000297261 C9orf66Q5T8R8 295 aa11.03□□□□□ -0.64
SHH-201ENST00000297261 SBSPONQ8IVN8 264 aa11.03□□□□□ -0.64
SHH-201ENST00000297261 TRBV6-4A0A1B0GX49 114 aa11.03□□□□□ -0.64
SHH-201ENST00000297261 CCKP06307 115 aa11.03□□□□□ -0.64
SHH-201ENST00000297261 Q8N2B8 174 aa11.03□□□□□ -0.64
SHH-201ENST00000297261 FAM19A1Q7Z5A9 133 aa11.03□□□□□ -0.64
SHH-201ENST00000297261 WFDC10AQ9H1F0 79 aa11.02□□□□□ -0.64
SHH-201ENST00000297261 C3orf84H3BNL1 204 aa11.02□□□□□ -0.65
SHH-201ENST00000297261 CFAP47Q6ZTR5 3102 aa11.02□□□□□ -0.65
SHH-201ENST00000297261 LINC00959A0A1B0GUT2 108 aa11.02□□□□□ -0.65
SHH-201ENST00000297261 DEFB121Q5J5C9 76 aa11.01□□□□□ -0.65
SHH-201ENST00000297261 F8P00451 2351 aa11.01□□□□□ -0.65
SHH-201ENST00000297261 UBE2DNLQ8IWF7 75 aa11.01□□□□□ -0.65
SHH-201ENST00000297261 PRR4Q16378 134 aa11□□□□□ -0.65
SHH-201ENST00000297261 ASPMQ8IZT6 3477 aa11□□□□□ -0.65
SHH-201ENST00000297261 NTM-AS1Q6ZSK4 140 aa11□□□□□ -0.65
SHH-201ENST00000297261 NDUFS5O43920 106 aa10.99□□□□□ -0.65
SHH-201ENST00000297261 C1orf158Q8N1D5 194 aa10.99□□□□□ -0.65
SHH-201ENST00000297261 LINC00337Q8N6G1 96 aa10.99□□□□□ -0.65
SHH-201ENST00000297261 SPTSSBQ8NFR3 76 aa10.99□□□□□ -0.65
SHH-201ENST00000297261 CFAP46Q8IYW2 2715 aa10.99□□□□□ -0.65
SHH-201ENST00000297261 SMIM26A0A096LP01 95 aa10.98□□□□□ -0.65
SHH-201ENST00000297261 LAMA5O15230 3695 aa10.98□□□□□ -0.65
SHH-201ENST00000297261 FLNBO75369 2602 aaKnown RBP10.98□□□□□ -0.65
SHH-201ENST00000297261 SOSTDC1Q6X4U4 206 aa10.98□□□□□ -0.65
SHH-201ENST00000297261 IGLV4-60A0A075B6I1 120 aa10.97□□□□□ -0.65
SHH-201ENST00000297261 A0A096LNT2 108 aa10.97□□□□□ -0.65
SHH-201ENST00000297261 FAM19A3Q7Z5A8 133 aa10.97□□□□□ -0.65
SHH-201ENST00000297261 Q9UF83 564 aa10.97□□□□□ -0.65
SHH-201ENST00000297261 V9GYY9 64 aa10.97□□□□□ -0.65
SHH-201ENST00000297261 C9orf116Q5BN46 136 aaPredicted RBP10.97□□□□□ -0.65
SHH-201ENST00000297261 ZZEF1O43149 2961 aa10.96□□□□□ -0.65
SHH-201ENST00000297261 NDUFC1O43677 76 aa10.96□□□□□ -0.65
SHH-201ENST00000297261 TRAV7A0A075B6U4 112 aa10.96□□□□□ -0.66
SHH-201ENST00000297261 Q8N814 137 aa10.95□□□□□ -0.66
SHH-201ENST00000297261 FSHBP01225 129 aa10.95□□□□□ -0.66
SHH-201ENST00000297261 NHLRC4P0CG21 123 aaPredicted RBP10.95□□□□□ -0.66
SHH-201ENST00000297261 KLK9Q2XQG4 91 aa10.95□□□□□ -0.66
SHH-201ENST00000297261 FLNAP21333 2647 aaKnown RBP10.95□□□□□ -0.66
SHH-201ENST00000297261 LRCOL1A6NCL2 159 aa10.94□□□□□ -0.66
SHH-201ENST00000297261 MIFP14174 115 aa10.94□□□□□ -0.66
SHH-201ENST00000297261 CD164L2Q6UWJ8 174 aa10.94□□□□□ -0.66
SHH-201ENST00000297261 LRBAP50851 2863 aa10.94□□□□□ -0.66
SHH-201ENST00000297261 ODF3L2Q3SX64 289 aa10.94□□□□□ -0.66
SHH-201ENST00000297261 KIR2DL5BQ8NHK3 375 aa10.94□□□□□ -0.66
SHH-201ENST00000297261 FLNCQ14315 2725 aa10.93□□□□□ -0.66
SHH-201ENST00000297261 COL12A1Q99715 3063 aa10.93□□□□□ -0.66
SHH-201ENST00000297261 Q8N3U1 123 aa10.93□□□□□ -0.66
SHH-201ENST00000297261 SERP1Q9Y6X1 66 aa10.93□□□□□ -0.66
SHH-201ENST00000297261 FAM218AQ96MZ4 157 aa10.92□□□□□ -0.66
SHH-201ENST00000297261 CELA1Q9UNI1 258 aa10.92□□□□□ -0.66
SHH-201ENST00000297261 A0A087WZ39 114 aa10.91□□□□□ -0.66
SHH-201ENST00000297261 C1orf195Q5TG92 126 aa10.91□□□□□ -0.66
SHH-201ENST00000297261 Q8IZM0 81 aa10.91□□□□□ -0.66
SHH-201ENST00000297261 CRYGAP11844 174 aa10.9□□□□□ -0.66
SHH-201ENST00000297261 ITPR3Q14573 2671 aa10.9□□□□□ -0.66
SHH-201ENST00000297261 A8MTW9 85 aa10.9□□□□□ -0.66
SHH-201ENST00000297261 UNQ6190/PRO20217Q6UXQ8 127 aa10.9□□□□□ -0.66
SHH-201ENST00000297261 LINC00482Q8N8I6 264 aa10.9□□□□□ -0.66
SHH-201ENST00000297261 KALRNO60229 2985 aa10.9□□□□□ -0.67
SHH-201ENST00000297261 RMI2Q96E14 147 aa10.9□□□□□ -0.67
SHH-201ENST00000297261 IGKV2-28A0A075B6P5 120 aa10.89□□□□□ -0.67
SHH-201ENST00000297261 IGKV2D-28P01615 120 aa10.89□□□□□ -0.67
SHH-201ENST00000297261 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.89□□□□□ -0.67
SHH-201ENST00000297261 ATP5EP56381 51 aaPredicted RBP10.88□□□□□ -0.67
SHH-201ENST00000297261 C16orf95Q9H693 158 aa10.88□□□□□ -0.67
SHH-201ENST00000297261 IGLV5-39A0A0G2JS06 123 aa10.88□□□□□ -0.67
SHH-201ENST00000297261 C4orf26Q17RF5 130 aa10.88□□□□□ -0.67
SHH-201ENST00000297261 HELZ2Q9BYK8 2649 aaKnown RBP10.88□□□□□ -0.67
SHH-201ENST00000297261 A0A096LNI7 61 aa10.88□□□□□ -0.67
SHH-201ENST00000297261 HIGD2AQ9BW72 106 aa10.88□□□□□ -0.67
SHH-201ENST00000297261 ZNF73O43830 326 aaPredicted RBP10.87□□□□□ -0.67
SHH-201ENST00000297261 SPENQ96T58 3664 aaKnown RBP10.87□□□□□ -0.67
SHH-201ENST00000297261 CYSRT1A8MQ03 144 aa10.87□□□□□ -0.67
SHH-201ENST00000297261 NDUFB1O75438 58 aa10.87□□□□□ -0.67
SHH-201ENST00000297261 TACC2O95359 2948 aa10.86□□□□□ -0.67
SHH-201ENST00000297261 H0Y9J4 135 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 76.3 ms