RNA–Protein interactions for RNA: ENST00000279452.10

CD44-204, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 862 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-204ENST00000279452 PLA2G1BP04054 148 aaKnown RBP4.17□□□□□ -1.74
CD44-204ENST00000279452 IGLC3P0DOY3 106 aa4.17□□□□□ -1.74
CD44-204ENST00000279452 S100A1P23297 94 aa4.17□□□□□ -1.74
CD44-204ENST00000279452 GAGE2EQ4V326 116 aa4.17□□□□□ -1.74
CD44-204ENST00000279452 C10orf25Q5T742 122 aa4.17□□□□□ -1.74
CD44-204ENST00000279452 FAM19A3Q7Z5A8 133 aa4.17□□□□□ -1.74
CD44-204ENST00000279452 Q8IZM0 81 aa4.17□□□□□ -1.74
CD44-204ENST00000279452 LINC01561Q8N1V8 128 aa4.17□□□□□ -1.74
CD44-204ENST00000279452 COX7B2Q8TF08 81 aa4.17□□□□□ -1.74
CD44-204ENST00000279452 MRPL35Q9NZE8 188 aaKnown RBP4.17□□□□□ -1.74
CD44-204ENST00000279452 GAGE2DQ9UEU5 116 aa4.17□□□□□ -1.74
CD44-204ENST00000279452 TRBV30A0A0K0K1B3 111 aa4.16□□□□□ -1.74
CD44-204ENST00000279452 PTTG1IPP53801 180 aa4.16□□□□□ -1.74
CD44-204ENST00000279452 RPL37AP61513 92 aaKnown RBP4.16□□□□□ -1.74
CD44-204ENST00000279452 C7orf33Q8WU49 177 aa4.16□□□□□ -1.74
CD44-204ENST00000279452 KRTAP17-1Q9BYP8 105 aa4.16□□□□□ -1.74
CD44-204ENST00000279452 KRTAP4-5Q9BYR2 181 aa4.16□□□□□ -1.74
CD44-204ENST00000279452 C6orf48Q9UBA6 75 aa4.16□□□□□ -1.74
CD44-204ENST00000279452 HSPB8Q9UJY1 196 aa4.16□□□□□ -1.74
CD44-204ENST00000279452 DYNC1H1Q14204 4646 aaKnown RBP4.15□□□□□ -1.74
CD44-204ENST00000279452 KIAA1109Q2LD37 5005 aa4.15□□□□□ -1.74
CD44-204ENST00000279452 IGLV5-45A0A087WSX0 123 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 C11orf86A6NJI1 115 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 F8VRH5 84 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 NUPR1O60356 82 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST1H2BKO60814 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST1H2BJP06899 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 INAFM2P0DMQ5 153 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 ZNF22P17026 224 aaPredicted RBP4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST1H2BOP23527 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST1H2BBP33778 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 CXCL5P42830 114 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST1H2BDP58876 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 LINC00310P59036 64 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST1H2BCP62807 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 CIRBPQ14011 172 aaKnown RBP4.15□□□□□ -1.75
CD44-204ENST00000279452 KIAA0087Q14695 138 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST2H2BEQ16778 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 C21orf62-AS1Q17RA5 79 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 RNF151Q2KHN1 245 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 C9orf116Q5BN46 136 aaPredicted RBP4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST1H2BHQ93079 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST1H2BNQ99877 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 HIST1H2BMQ99879 126 aa4.15□□□□□ -1.75
CD44-204ENST00000279452 PKHD1P08F94 4074 aa4.14□□□□□ -1.75
CD44-204ENST00000279452 TRAV12-1A0A0B4J245 112 aa4.14□□□□□ -1.75
CD44-204ENST00000279452 NDUFC2-KCTD14E9PQ53 114 aa4.14□□□□□ -1.75
CD44-204ENST00000279452 S100A6P06703 90 aa4.14□□□□□ -1.75
CD44-204ENST00000279452 ANKRD39Q53RE8 183 aa4.14□□□□□ -1.75
CD44-204ENST00000279452 Q6ZRP5 223 aa4.14□□□□□ -1.75
CD44-204ENST00000279452 FAM19A5Q7Z5A7 132 aaPredicted RBP4.14□□□□□ -1.75
CD44-204ENST00000279452 MAP1LC3CQ9BXW4 147 aa4.14□□□□□ -1.75
CD44-204ENST00000279452 PLAC8Q9NZF1 115 aa4.14□□□□□ -1.75
CD44-204ENST00000279452 PMCHL2Q9BQD1 86 aa4.13□□□□□ -1.75
CD44-204ENST00000279452 A0A1W2PNN7 141 aa4.12□□□□□ -1.75
CD44-204ENST00000279452 FAM168BA1KXE4 195 aa4.12□□□□□ -1.75
CD44-204ENST00000279452 DPM2O94777 84 aa4.12□□□□□ -1.75
CD44-204ENST00000279452 TLX1NBP0CAT3 122 aa4.12□□□□□ -1.75
CD44-204ENST00000279452 PLNP26678 52 aa4.12□□□□□ -1.75
CD44-204ENST00000279452 PFN2P35080 140 aa4.12□□□□□ -1.75
CD44-204ENST00000279452 ODF1Q14990 250 aa4.12□□□□□ -1.75
CD44-204ENST00000279452 ZNF625Q96I27 306 aaPredicted RBP4.12□□□□□ -1.75
CD44-204ENST00000279452 XAGE1AQ9HD64 81 aa4.12□□□□□ -1.75
CD44-204ENST00000279452 LRP1BQ9NZR2 4599 aa4.12□□□□□ -1.75
CD44-204ENST00000279452 IGLV5-39A0A0G2JS06 123 aa4.11□□□□□ -1.75
CD44-204ENST00000279452 TMEM223A0PJW6 202 aa4.11□□□□□ -1.75
CD44-204ENST00000279452 M0QXV9 152 aa4.11□□□□□ -1.75
CD44-204ENST00000279452 IGKCP01834 107 aa4.11□□□□□ -1.75
CD44-204ENST00000279452 KRTDAPP60985 99 aa4.11□□□□□ -1.75
CD44-204ENST00000279452 HERVK_113P61574 105 aa4.11□□□□□ -1.75
CD44-204ENST00000279452 UBE2BP63146 152 aa4.11□□□□□ -1.75
CD44-204ENST00000279452 MEIG1Q5JSS6 88 aa4.11□□□□□ -1.75
CD44-204ENST00000279452 PHF5AQ7RTV0 110 aaKnown RBP4.11□□□□□ -1.75
CD44-204ENST00000279452 DNAH5Q8TE73 4624 aa4.11□□□□□ -1.75
CD44-204ENST00000279452 A0A0U1RRA0 63 aa4.1□□□□□ -1.75
CD44-204ENST00000279452 C9orf129Q5T035 196 aaKnown RBP4.1□□□□□ -1.75
CD44-204ENST00000279452 SFTA2Q6UW10 78 aa4.1□□□□□ -1.75
CD44-204ENST00000279452 ERG28Q9UKR5 140 aa4.1□□□□□ -1.75
CD44-204ENST00000279452 HERC2O95714 4834 aa4.1□□□□□ -1.75
CD44-204ENST00000279452 APOBP04114 4563 aaKnown RBP4.09□□□□□ -1.75
CD44-204ENST00000279452 C20orf202A1L168 122 aa4.09□□□□□ -1.75
CD44-204ENST00000279452 SYS1-DBNDD2H3BUS1 97 aa4.09□□□□□ -1.75
CD44-204ENST00000279452 LGALS3P17931 250 aaKnown RBP4.09□□□□□ -1.75
CD44-204ENST00000279452 S100A2P29034 98 aa4.09□□□□□ -1.75
CD44-204ENST00000279452 LINC00158P58513 81 aa4.09□□□□□ -1.75
CD44-204ENST00000279452 PRR3P79522 188 aaKnown RBP4.09□□□□□ -1.75
CD44-204ENST00000279452 MYMXA0A1B0GTQ4 84 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 LEPROTO15243 131 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 CTAG1AP78358 180 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 C1orf137Q5JT78 98 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 XP32Q5T750 250 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 SERTAD4-AS1Q5TG53 156 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 PET117Q6UWS5 81 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 NKAPP1Q8N9T2 125 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 PLEKHB2Q96CS7 222 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 NDUFA12Q9UI09 145 aa4.08□□□□□ -1.76
CD44-204ENST00000279452 RYR1P21817 5038 aa4.07□□□□□ -1.76
CD44-204ENST00000279452 HSPG2P98160 4391 aa4.07□□□□□ -1.76
CD44-204ENST00000279452 GAGE10A6NGK3 116 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms