RNA–Protein interactions for RNA: ENST00000275036.11

HMGN3-201, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 1 (best) BASIC

Gene HMGN3, Length 831 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-201ENST00000275036 TOMM7Q9P0U1 55 aa8.89□□□□□ -0.99
HMGN3-201ENST00000275036 PSORS1C2Q9UIG4 136 aa8.89□□□□□ -0.99
HMGN3-201ENST00000275036 KRTAP11-1Q8IUC1 163 aa8.88□□□□□ -0.99
HMGN3-201ENST00000275036 Q8IZM0 81 aa8.88□□□□□ -0.99
HMGN3-201ENST00000275036 URB1-AS1Q96HZ7 61 aa8.88□□□□□ -0.99
HMGN3-201ENST00000275036 LINC01600Q96MT4 127 aa8.88□□□□□ -0.99
HMGN3-201ENST00000275036 SEC11AP67812 179 aa8.87□□□□□ -0.99
HMGN3-201ENST00000275036 C9orf129Q5T035 196 aaKnown RBP8.87□□□□□ -0.99
HMGN3-201ENST00000275036 SPINK6Q6UWN8 80 aa8.87□□□□□ -0.99
HMGN3-201ENST00000275036 FA2HQ7L5A8 372 aa8.87□□□□□ -0.99
HMGN3-201ENST00000275036 PACRGQ96M98 296 aaPredicted RBP8.87□□□□□ -0.99
HMGN3-201ENST00000275036 GEMIN7Q9H840 131 aaKnown RBP8.87□□□□□ -0.99
HMGN3-201ENST00000275036 A0A096LNJ9 63 aa8.86□□□□□ -0.99
HMGN3-201ENST00000275036 NDUFC2-KCTD14E9PQ53 114 aa8.86□□□□□ -0.99
HMGN3-201ENST00000275036 PRSS2P07478 247 aa8.86□□□□□ -0.99
HMGN3-201ENST00000275036 C6orf226Q5I0X4 101 aa8.86□□□□□ -0.99
HMGN3-201ENST00000275036 FAM19A5Q7Z5A7 132 aaPredicted RBP8.86□□□□□ -0.99
HMGN3-201ENST00000275036 C18orf32Q8TCD1 76 aa8.86□□□□□ -0.99
HMGN3-201ENST00000275036 CST9LQ9H4G1 147 aa8.86□□□□□ -0.99
HMGN3-201ENST00000275036 TRAPPC1Q9Y5R8 145 aa8.86□□□□□ -0.99
HMGN3-201ENST00000275036 IGLV5-45A0A087WSX0 123 aa8.85□□□□□ -0.99
HMGN3-201ENST00000275036 TINCRA0A1B0GVN0 87 aa8.85□□□□□ -0.99
HMGN3-201ENST00000275036 SMIM1B2RUZ4 78 aa8.85□□□□□ -0.99
HMGN3-201ENST00000275036 CKS1BP61024 79 aa8.85□□□□□ -0.99
HMGN3-201ENST00000275036 LINC00469Q8N7U9 141 aa8.85□□□□□ -0.99
HMGN3-201ENST00000275036 SMCO4Q9NRQ5 59 aa8.85□□□□□ -0.99
HMGN3-201ENST00000275036 LINC01549A6NIU2 74 aa8.84□□□□□ -0.99
HMGN3-201ENST00000275036 SNAPINO95295 136 aa8.84□□□□□ -0.99
HMGN3-201ENST00000275036 C1orf137Q5JT78 98 aa8.84□□□□□ -0.99
HMGN3-201ENST00000275036 SVBPQ8N300 66 aa8.84□□□□□ -0.99
HMGN3-201ENST00000275036 LRP2P98164 4655 aa8.84□□□□□ -0.99
HMGN3-201ENST00000275036 PMVKQ15126 192 aa8.83□□□□□ -1
HMGN3-201ENST00000275036 YPEL4Q96NS1 127 aa8.83□□□□□ -1
HMGN3-201ENST00000275036 M0QXV9 152 aa8.82□□□□□ -1
HMGN3-201ENST00000275036 KRTAP10-8P60410 259 aa8.82□□□□□ -1
HMGN3-201ENST00000275036 NDUFA5Q16718 116 aa8.82□□□□□ -1
HMGN3-201ENST00000275036 F8VRH5 84 aa8.81□□□□□ -1
HMGN3-201ENST00000275036 SPINK8P0C7L1 97 aa8.81□□□□□ -1
HMGN3-201ENST00000275036 LINC00614P0C842 121 aa8.81□□□□□ -1
HMGN3-201ENST00000275036 PMCHL1Q16048 86 aa8.81□□□□□ -1
HMGN3-201ENST00000275036 PDZD11Q5EBL8 140 aa8.81□□□□□ -1
HMGN3-201ENST00000275036 REG3GQ6UW15 175 aa8.81□□□□□ -1
HMGN3-201ENST00000275036 COX7B2Q8TF08 81 aa8.8□□□□□ -1
HMGN3-201ENST00000275036 XAGE1AQ9HD64 81 aa8.8□□□□□ -1
HMGN3-201ENST00000275036 HBDP02042 147 aa8.79□□□□□ -1
HMGN3-201ENST00000275036 IGLV7-43P04211 117 aa8.79□□□□□ -1
HMGN3-201ENST00000275036 CXCL5P42830 114 aa8.79□□□□□ -1
HMGN3-201ENST00000275036 IGLC3P0DOY3 106 aa8.78□□□□□ -1
HMGN3-201ENST00000275036 RNF213Q63HN8 5207 aa8.78□□□□□ -1
HMGN3-201ENST00000275036 NDUFA6P56556 154 aa8.77□□□□□ -1.01
HMGN3-201ENST00000275036 ZNF22P17026 224 aaPredicted RBP8.76□□□□□ -1.01
HMGN3-201ENST00000275036 UBE2BP63146 152 aa8.76□□□□□ -1.01
HMGN3-201ENST00000275036 CBLN2Q8IUK8 224 aa8.76□□□□□ -1.01
HMGN3-201ENST00000275036 C22orf24Q9Y442 160 aa8.76□□□□□ -1.01
HMGN3-201ENST00000275036 IGLV5-39A0A0G2JS06 123 aa8.75□□□□□ -1.01
HMGN3-201ENST00000275036 H3BRM9 83 aa8.74□□□□□ -1.01
HMGN3-201ENST00000275036 RAB5BP61020 215 aa8.74□□□□□ -1.01
HMGN3-201ENST00000275036 C11orf86A6NJI1 115 aa8.73□□□□□ -1.01
HMGN3-201ENST00000275036 H0Y9J4 135 aa8.72□□□□□ -1.01
HMGN3-201ENST00000275036 ATP5LO75964 103 aa8.72□□□□□ -1.01
HMGN3-201ENST00000275036 BAGE3Q86Y29 109 aa8.72□□□□□ -1.01
HMGN3-201ENST00000275036 DIRC1Q969H9 104 aa8.72□□□□□ -1.01
HMGN3-201ENST00000275036 SLC7A5P1Q8MH63 180 aa8.71□□□□□ -1.02
HMGN3-201ENST00000275036 TP73-AS1Q9UF72 201 aa8.71□□□□□ -1.02
HMGN3-201ENST00000275036 LCE2AQ5TA79 106 aaPredicted RBP8.7□□□□□ -1.02
HMGN3-201ENST00000275036 MRPL55Q7Z7F7 128 aaKnown RBP8.7□□□□□ -1.02
HMGN3-201ENST00000275036 CHCHD1Q96BP2 118 aaKnown RBP8.7□□□□□ -1.02
HMGN3-201ENST00000275036 KRTAP1-4P0C5Y4 121 aa8.69□□□□□ -1.02
HMGN3-201ENST00000275036 LBHQ53QV2 105 aaPredicted RBP8.69□□□□□ -1.02
HMGN3-201ENST00000275036 PRR26Q8N8Z3 221 aa8.69□□□□□ -1.02
HMGN3-201ENST00000275036 LPAP08519 4548 aa8.69□□□□□ -1.02
HMGN3-201ENST00000275036 TRGC2P03986 189 aa8.68□□□□□ -1.02
HMGN3-201ENST00000275036 PFN2P35080 140 aa8.68□□□□□ -1.02
HMGN3-201ENST00000275036 TMEM170BQ5T4T1 132 aa8.68□□□□□ -1.02
HMGN3-201ENST00000275036 LINC00167Q96N53 147 aa8.68□□□□□ -1.02
HMGN3-201ENST00000275036 CHTOPQ9Y3Y2 248 aaKnown RBP8.68□□□□□ -1.02
HMGN3-201ENST00000275036 IGLV5-37A0A075B6J1 123 aa8.67□□□□□ -1.02
HMGN3-201ENST00000275036 NUPR1O60356 82 aa8.67□□□□□ -1.02
HMGN3-201ENST00000275036 FAM19A2Q8N3H0 131 aa8.67□□□□□ -1.02
HMGN3-201ENST00000275036 IFI27L1Q96BM0 104 aa8.67□□□□□ -1.02
HMGN3-201ENST00000275036 TRAV12-1A0A0B4J245 112 aa8.66□□□□□ -1.02
HMGN3-201ENST00000275036 GAGE10A6NGK3 116 aa8.66□□□□□ -1.02
HMGN3-201ENST00000275036 RPL37AP8A6NKH3 93 aa8.66□□□□□ -1.02
HMGN3-201ENST00000275036 ZNF861PO60384 105 aa8.66□□□□□ -1.02
HMGN3-201ENST00000275036 SCO1O75880 301 aa8.66□□□□□ -1.02
HMGN3-201ENST00000275036 LINC00310P59036 64 aa8.66□□□□□ -1.02
HMGN3-201ENST00000275036 ZNF625Q96I27 306 aaPredicted RBP8.66□□□□□ -1.02
HMGN3-201ENST00000275036 ERG28Q9UKR5 140 aa8.66□□□□□ -1.02
HMGN3-201ENST00000275036 TMEM223A0PJW6 202 aa8.64□□□□□ -1.03
HMGN3-201ENST00000275036 HSBP1O75506 76 aa8.64□□□□□ -1.03
HMGN3-201ENST00000275036 Q8NDZ9 215 aa8.64□□□□□ -1.03
HMGN3-201ENST00000275036 SND1-IT1Q9HBX3 110 aa8.64□□□□□ -1.03
HMGN3-201ENST00000275036 BCE1O60756 84 aa8.63□□□□□ -1.03
HMGN3-201ENST00000275036 VPREB1P12018 145 aa8.63□□□□□ -1.03
HMGN3-201ENST00000275036 NKAPP1Q8N9T2 125 aa8.63□□□□□ -1.03
HMGN3-201ENST00000275036 COLCA2A8K830 154 aa8.62□□□□□ -1.03
HMGN3-201ENST00000275036 SERF1AO75920 110 aa8.62□□□□□ -1.03
HMGN3-201ENST00000275036 COX17Q14061 63 aa8.62□□□□□ -1.03
HMGN3-201ENST00000275036 IGLV1-50A0A075B6I6 118 aa8.61□□□□□ -1.03
HMGN3-201ENST00000275036 IGKV2-28A0A075B6P5 120 aa8.6□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 237 ms