RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 PKIGQ9Y2B9 76 aa8.1□□□□□ -1.11
VPS4A-201ENST00000254950 H3BNG1 76 aa8.1□□□□□ -1.11
VPS4A-201ENST00000254950 K7EP13 123 aa8.1□□□□□ -1.11
VPS4A-201ENST00000254950 RPL18AQ02543 176 aaKnown RBP8.1□□□□□ -1.11
VPS4A-201ENST00000254950 C2orf91Q6ZV80 131 aa8.1□□□□□ -1.11
VPS4A-201ENST00000254950 NF1P21359 2839 aa8.09□□□□□ -1.11
VPS4A-201ENST00000254950 MDFIQ99750 246 aa8.09□□□□□ -1.12
VPS4A-201ENST00000254950 SMIM1B2RUZ4 78 aa8.08□□□□□ -1.12
VPS4A-201ENST00000254950 A0A087WZ39 114 aa8.08□□□□□ -1.12
VPS4A-201ENST00000254950 COX6A2Q02221 97 aa8.08□□□□□ -1.12
VPS4A-201ENST00000254950 C14orf177Q52M58 125 aa8.08□□□□□ -1.12
VPS4A-201ENST00000254950 FBN2P35556 2912 aa8.08□□□□□ -1.12
VPS4A-201ENST00000254950 WFDC10BQ8IUB3 73 aa8.08□□□□□ -1.12
VPS4A-201ENST00000254950 C9JAW5 83 aa8.07□□□□□ -1.12
VPS4A-201ENST00000254950 TIMM17BO60830 172 aa8.07□□□□□ -1.12
VPS4A-201ENST00000254950 LINC00612Q8N6U2 182 aa8.07□□□□□ -1.12
VPS4A-201ENST00000254950 K7EP34 96 aa8.07□□□□□ -1.12
VPS4A-201ENST00000254950 TAX1BP3O14907 124 aa8.06□□□□□ -1.12
VPS4A-201ENST00000254950 C2orf82Q6UX34 121 aa8.06□□□□□ -1.12
VPS4A-201ENST00000254950 Q8IZM0 81 aa8.06□□□□□ -1.12
VPS4A-201ENST00000254950 NBEAL2Q6ZNJ1 2754 aa8.06□□□□□ -1.12
VPS4A-201ENST00000254950 B9D2Q9BPU9 175 aa8.06□□□□□ -1.12
VPS4A-201ENST00000254950 SPANXCQ9NY87 97 aa8.05□□□□□ -1.12
VPS4A-201ENST00000254950 NOTCH1P46531 2555 aa8.05□□□□□ -1.12
VPS4A-201ENST00000254950 GAGE2BQ13066 116 aa8.05□□□□□ -1.12
VPS4A-201ENST00000254950 LINC00308Q8TCZ7 52 aa8.05□□□□□ -1.12
VPS4A-201ENST00000254950 SYCNQ0VAF6 134 aa8.05□□□□□ -1.12
VPS4A-201ENST00000254950 TSPEAR-AS2P59090 65 aa8.04□□□□□ -1.12
VPS4A-201ENST00000254950 LINC00526Q96FQ7 95 aa8.04□□□□□ -1.12
VPS4A-201ENST00000254950 ESRGQ1W209 222 aa8.04□□□□□ -1.12
VPS4A-201ENST00000254950 A0A0B4J2C4 111 aa8.03□□□□□ -1.12
VPS4A-201ENST00000254950 H3BMG7 143 aa8.03□□□□□ -1.12
VPS4A-201ENST00000254950 SPANXDQ9BXN6 97 aa8.03□□□□□ -1.12
VPS4A-201ENST00000254950 CARD19Q96LW7 228 aa8.02□□□□□ -1.12
VPS4A-201ENST00000254950 TMEM126AQ9H061 195 aa8.02□□□□□ -1.13
VPS4A-201ENST00000254950 TENM4Q6N022 2769 aa8.02□□□□□ -1.13
VPS4A-201ENST00000254950 CYSRT1A8MQ03 144 aa8.01□□□□□ -1.13
VPS4A-201ENST00000254950 IGHV3OR16-9A0A0B4J2B5 98 aa8.01□□□□□ -1.13
VPS4A-201ENST00000254950 H0YGX0 51 aa8.01□□□□□ -1.13
VPS4A-201ENST00000254950 NCR3O14931 201 aa8.01□□□□□ -1.13
VPS4A-201ENST00000254950 LECT2O14960 151 aa8.01□□□□□ -1.13
VPS4A-201ENST00000254950 UBE2BP63146 152 aa8.01□□□□□ -1.13
VPS4A-201ENST00000254950 LINC01556Q5JQF7 62 aa8.01□□□□□ -1.13
VPS4A-201ENST00000254950 LINC01561Q8N1V8 128 aa8.01□□□□□ -1.13
VPS4A-201ENST00000254950 TM2D3Q9BRN9 247 aa8□□□□□ -1.13
VPS4A-201ENST00000254950 LAMTOR3Q9UHA4 124 aa8□□□□□ -1.13
VPS4A-201ENST00000254950 F8W1H4 67 aa7.99□□□□□ -1.13
VPS4A-201ENST00000254950 M0R2N4 97 aa7.99□□□□□ -1.13
VPS4A-201ENST00000254950 XAGE1AQ9HD64 81 aa7.99□□□□□ -1.13
VPS4A-201ENST00000254950 IGLV5-45A0A087WSX0 123 aa7.99□□□□□ -1.13
VPS4A-201ENST00000254950 UNQ6190/PRO20217Q6UXQ8 127 aa7.99□□□□□ -1.13
VPS4A-201ENST00000254950 IGLV5-39A0A0G2JS06 123 aa7.98□□□□□ -1.13
VPS4A-201ENST00000254950 TSPAN13O95857 204 aa7.98□□□□□ -1.13
VPS4A-201ENST00000254950 MUC7Q8TAX7 377 aa7.98□□□□□ -1.13
VPS4A-201ENST00000254950 LY6G6CO95867 125 aa7.98□□□□□ -1.13
VPS4A-201ENST00000254950 COX17Q14061 63 aa7.98□□□□□ -1.13
VPS4A-201ENST00000254950 ETDBQ3ZM63 59 aa7.98□□□□□ -1.13
VPS4A-201ENST00000254950 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.97□□□□□ -1.13
VPS4A-201ENST00000254950 IGKV2-24A0A0C4DH68 120 aa7.97□□□□□ -1.13
VPS4A-201ENST00000254950 ETDCA0A1B0GVM5 59 aa7.97□□□□□ -1.13
VPS4A-201ENST00000254950 NIPBLQ6KC79 2804 aaeCLIP7.96□□□□□ -1.14
VPS4A-201ENST00000254950 LINC01620Q4KN68 170 aa7.95□□□□□ -1.14
VPS4A-201ENST00000254950 DIRC1Q969H9 104 aa7.95□□□□□ -1.14
VPS4A-201ENST00000254950 USP17L23D6RBM5 183 aa7.95□□□□□ -1.14
VPS4A-201ENST00000254950 Q8N3U1 123 aa7.95□□□□□ -1.14
VPS4A-201ENST00000254950 TRBV30A0A0K0K1B3 111 aa7.94□□□□□ -1.14
VPS4A-201ENST00000254950 A0A1B0GV72 72 aa7.94□□□□□ -1.14
VPS4A-201ENST00000254950 F8WEM9 126 aa7.93□□□□□ -1.14
VPS4A-201ENST00000254950 INAFM2P0DMQ5 153 aa7.93□□□□□ -1.14
VPS4A-201ENST00000254950 ADAMTSL4-AS1Q5T5F5 129 aa7.93□□□□□ -1.14
VPS4A-201ENST00000254950 LINC00588Q9Y4M8 146 aa7.93□□□□□ -1.14
VPS4A-201ENST00000254950 C9orf116Q5BN46 136 aaPredicted RBP7.93□□□□□ -1.14
VPS4A-201ENST00000254950 BAALC-AS2P0C853 105 aa7.93□□□□□ -1.14
VPS4A-201ENST00000254950 PPDPFLQ8WWR9 84 aa7.93□□□□□ -1.14
VPS4A-201ENST00000254950 CLEC2BQ92478 149 aa7.93□□□□□ -1.14
VPS4A-201ENST00000254950 C2orf48Q96LS8 159 aa7.93□□□□□ -1.14
VPS4A-201ENST00000254950 MXRA5Q9NR99 2828 aa7.93□□□□□ -1.14
VPS4A-201ENST00000254950 ORMDL1Q9P0S3 153 aa7.92□□□□□ -1.14
VPS4A-201ENST00000254950 F8WDY8 70 aa7.92□□□□□ -1.14
VPS4A-201ENST00000254950 C6orf223Q8N319 242 aa7.92□□□□□ -1.14
VPS4A-201ENST00000254950 ZFHX3Q15911 3703 aa7.91□□□□□ -1.14
VPS4A-201ENST00000254950 LOC107984640A0A0U1RRK4 108 aa7.91□□□□□ -1.14
VPS4A-201ENST00000254950 ANKRD29Q8N6D5 301 aa7.91□□□□□ -1.14
VPS4A-201ENST00000254950 NTN5Q8WTR8 489 aaPredicted RBP7.9□□□□□ -1.14
VPS4A-201ENST00000254950 VPS13CQ709C8 3753 aa7.9□□□□□ -1.14
VPS4A-201ENST00000254950 TRIAP1O43715 76 aa7.9□□□□□ -1.14
VPS4A-201ENST00000254950 ENHOQ6UWT2 76 aa7.9□□□□□ -1.14
VPS4A-201ENST00000254950 PDZD2O15018 2839 aa7.9□□□□□ -1.14
VPS4A-201ENST00000254950 TCL1BO95988 128 aa7.9□□□□□ -1.15
VPS4A-201ENST00000254950 FOXI1Q12951 378 aa7.9□□□□□ -1.15
VPS4A-201ENST00000254950 DNAH10OSP0CZ25 163 aa7.89□□□□□ -1.15
VPS4A-201ENST00000254950 COX7BP24311 80 aa7.89□□□□□ -1.15
VPS4A-201ENST00000254950 OCIAD2Q56VL3 154 aa7.88□□□□□ -1.15
VPS4A-201ENST00000254950 M0R378 163 aa7.88□□□□□ -1.15
VPS4A-201ENST00000254950 TRBV10-2A0A0K0K1G8 114 aa7.88□□□□□ -1.15
VPS4A-201ENST00000254950 H3BT86 120 aa7.88□□□□□ -1.15
VPS4A-201ENST00000254950 WFDC2Q14508 124 aa7.88□□□□□ -1.15
VPS4A-201ENST00000254950 FAM19A5Q7Z5A7 132 aaPredicted RBP7.88□□□□□ -1.15
VPS4A-201ENST00000254950 FAM19A3Q7Z5A8 133 aa7.88□□□□□ -1.15
VPS4A-201ENST00000254950 NBEAL1Q6ZS30 2694 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 135.9 ms