RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 NDUFV3P56181 108 aaKnown RBP14.87□□□□□ -0.03
TRIM28-201ENST00000253024 NSD1Q96L73 2696 aaPredicted RBP14.86□□□□□ -0.03
TRIM28-201ENST00000253024 IGHV3OR16-9A0A0B4J2B5 98 aa14.86□□□□□ -0.03
TRIM28-201ENST00000253024 SHISA2Q6UWI4 295 aa14.86□□□□□ -0.03
TRIM28-201ENST00000253024 SMIM11BQ8TCY0 68 aa14.86□□□□□ -0.03
TRIM28-201ENST00000253024 C9orf116Q5BN46 136 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-201ENST00000253024 GAGE2AQ6NT46 116 aa14.85□□□□□ -0.03
TRIM28-201ENST00000253024 FAM222AQ5U5X8 452 aa14.85□□□□□ -0.03
TRIM28-201ENST00000253024 FLNBO75369 2602 aaKnown RBP14.84□□□□□ -0.03
TRIM28-201ENST00000253024 LINC00959A0A1B0GUT2 108 aa14.84□□□□□ -0.03
TRIM28-201ENST00000253024 HERV-K104P63124 156 aa14.83□□□□□ -0.03
TRIM28-201ENST00000253024 LINC00269Q8N2A0 174 aa14.82□□□□□ -0.04
TRIM28-201ENST00000253024 SMCR5Q8TEV8 140 aa14.82□□□□□ -0.04
TRIM28-201ENST00000253024 OVOL2Q9BRP0 275 aa14.81□□□□□ -0.04
TRIM28-201ENST00000253024 M0QXV9 152 aa14.81□□□□□ -0.04
TRIM28-201ENST00000253024 LECT2O14960 151 aa14.81□□□□□ -0.04
TRIM28-201ENST00000253024 C14orf132Q9NPU4 83 aa14.8□□□□□ -0.04
TRIM28-201ENST00000253024 DNAL4O96015 105 aa14.79□□□□□ -0.04
TRIM28-201ENST00000253024 ANGP03950 147 aaKnown RBP14.79□□□□□ -0.04
TRIM28-201ENST00000253024 HILS1P60008 231 aa14.79□□□□□ -0.04
TRIM28-201ENST00000253024 C22orf24Q9Y442 160 aa14.78□□□□□ -0.04
TRIM28-201ENST00000253024 FAM19A3Q7Z5A8 133 aa14.77□□□□□ -0.05
TRIM28-201ENST00000253024 TRAV13-2A0A0B4J235 113 aa14.76□□□□□ -0.05
TRIM28-201ENST00000253024 X6R8D5 127 aa14.76□□□□□ -0.05
TRIM28-201ENST00000253024 A0A087WZ39 114 aa14.76□□□□□ -0.05
TRIM28-201ENST00000253024 INAFM1C9JVW0 142 aa14.76□□□□□ -0.05
TRIM28-201ENST00000253024 COPS9Q8WXC6 57 aa14.76□□□□□ -0.05
TRIM28-201ENST00000253024 NCR3O14931 201 aa14.76□□□□□ -0.05
TRIM28-201ENST00000253024 C16orf95Q9H693 158 aa14.75□□□□□ -0.05
TRIM28-201ENST00000253024 FAM236AA0A1B0GUQ0 79 aa14.74□□□□□ -0.05
TRIM28-201ENST00000253024 FAM236BA0A1B0GV22 79 aa14.74□□□□□ -0.05
TRIM28-201ENST00000253024 MALP21145 153 aa14.73□□□□□ -0.05
TRIM28-201ENST00000253024 CELA1Q9UNI1 258 aa14.73□□□□□ -0.05
TRIM28-201ENST00000253024 LY6G6DO95868 133 aa14.73□□□□□ -0.05
TRIM28-201ENST00000253024 SS18Q15532 418 aa14.73□□□□□ -0.05
TRIM28-201ENST00000253024 CMC4P56277 68 aaPredicted RBP14.73□□□□□ -0.05
TRIM28-201ENST00000253024 NOTCH1P46531 2555 aa14.72□□□□□ -0.05
TRIM28-201ENST00000253024 STAB1Q9NY15 2570 aa14.72□□□□□ -0.05
TRIM28-201ENST00000253024 C6orf223Q8N319 242 aa14.72□□□□□ -0.05
TRIM28-201ENST00000253024 PRO0255Q9UI72 69 aa14.71□□□□□ -0.05
TRIM28-201ENST00000253024 RPL28P46779 137 aaKnown RBP14.7□□□□□ -0.06
TRIM28-201ENST00000253024 TRACP01848 142 aa14.7□□□□□ -0.06
TRIM28-201ENST00000253024 SMIM20Q8N5G0 67 aa14.69□□□□□ -0.06
TRIM28-201ENST00000253024 FBN1P35555 2871 aaKnown RBP14.68□□□□□ -0.06
TRIM28-201ENST00000253024 IGKV3D-7A0A0C4DH55 119 aa14.68□□□□□ -0.06
TRIM28-201ENST00000253024 J3QKU1 62 aa14.68□□□□□ -0.06
TRIM28-201ENST00000253024 IGHV4-28A0A0C4DH34 117 aa14.68□□□□□ -0.06
TRIM28-201ENST00000253024 CHCHD10Q8WYQ3 142 aaPredicted RBP14.68□□□□□ -0.06
TRIM28-201ENST00000253024 IBA57-AS1B1ANH7 110 aa14.67□□□□□ -0.06
TRIM28-201ENST00000253024 DAD1P61803 113 aa14.67□□□□□ -0.06
TRIM28-201ENST00000253024 SDIM1Q6ZPB5 146 aa14.67□□□□□ -0.06
TRIM28-201ENST00000253024 MAST4O15021 2626 aa14.66□□□□□ -0.06
TRIM28-201ENST00000253024 CFAP161Q6P656 301 aa14.65□□□□□ -0.06
TRIM28-201ENST00000253024 REG3AQ06141 175 aa14.64□□□□□ -0.07
TRIM28-201ENST00000253024 DEFB121Q5J5C9 76 aa14.64□□□□□ -0.07
TRIM28-201ENST00000253024 Q8NDZ9 215 aa14.64□□□□□ -0.07
TRIM28-201ENST00000253024 LINC01600Q96MT4 127 aa14.64□□□□□ -0.07
TRIM28-201ENST00000253024 F8P00451 2351 aa14.64□□□□□ -0.07
TRIM28-201ENST00000253024 TENM3Q9P273 2699 aa14.64□□□□□ -0.07
TRIM28-201ENST00000253024 C10orf25Q5T742 122 aa14.64□□□□□ -0.07
TRIM28-201ENST00000253024 KIR2DL5BQ8NHK3 375 aa14.63□□□□□ -0.07
TRIM28-201ENST00000253024 KLK12Q9UKR0 248 aa14.63□□□□□ -0.07
TRIM28-201ENST00000253024 FAM110AQ9BQ89 295 aa14.62□□□□□ -0.07
TRIM28-201ENST00000253024 UNQ6190/PRO20217Q6UXQ8 127 aa14.61□□□□□ -0.07
TRIM28-201ENST00000253024 FAM240AA0A1B0GVK7 77 aa14.61□□□□□ -0.07
TRIM28-201ENST00000253024 A0A087WVE0 104 aa14.6□□□□□ -0.07
TRIM28-201ENST00000253024 RETNQ9HD89 108 aa14.58□□□□□ -0.07
TRIM28-201ENST00000253024 LINC00846Q9NV44 126 aa14.58□□□□□ -0.08
TRIM28-201ENST00000253024 WFDC9Q8NEX5 89 aa14.57□□□□□ -0.08
TRIM28-201ENST00000253024 XAGE1AQ9HD64 81 aa14.57□□□□□ -0.08
TRIM28-201ENST00000253024 CXCL5P42830 114 aa14.57□□□□□ -0.08
TRIM28-201ENST00000253024 C6orf99Q4VX62 202 aa14.56□□□□□ -0.08
TRIM28-201ENST00000253024 Q6Q795 121 aa14.56□□□□□ -0.08
TRIM28-201ENST00000253024 Q8IZM0 81 aa14.55□□□□□ -0.08
TRIM28-201ENST00000253024 INAFM2P0DMQ5 153 aa14.55□□□□□ -0.08
TRIM28-201ENST00000253024 NANOS2P60321 138 aaKnown RBP14.55□□□□□ -0.08
TRIM28-201ENST00000253024 KIAA0087Q14695 138 aa14.55□□□□□ -0.08
TRIM28-201ENST00000253024 S100A7L2Q5SY68 101 aa14.54□□□□□ -0.08
TRIM28-201ENST00000253024 KMT2BQ9UMN6 2715 aaPredicted RBP14.54□□□□□ -0.08
TRIM28-201ENST00000253024 A0A1B0GUV1 79 aa14.54□□□□□ -0.08
TRIM28-201ENST00000253024 LINC00643Q86TS7 51 aa14.54□□□□□ -0.08
TRIM28-201ENST00000253024 RPL18AQ02543 176 aaKnown RBP14.53□□□□□ -0.08
TRIM28-201ENST00000253024 CD164L2Q6UWJ8 174 aa14.53□□□□□ -0.08
TRIM28-201ENST00000253024 LINC00612Q8N6U2 182 aa14.53□□□□□ -0.08
TRIM28-201ENST00000253024 H0YGX0 51 aa14.52□□□□□ -0.08
TRIM28-201ENST00000253024 TRBV7-7A0A0K0K1E9 115 aa14.52□□□□□ -0.09
TRIM28-201ENST00000253024 SPAG11BQ08648 103 aa14.52□□□□□ -0.09
TRIM28-201ENST00000253024 HIGD2BQ4VC39 106 aa14.52□□□□□ -0.09
TRIM28-201ENST00000253024 C9orf66Q5T8R8 295 aa14.52□□□□□ -0.09
TRIM28-201ENST00000253024 ORMDL1Q9P0S3 153 aa14.51□□□□□ -0.09
TRIM28-201ENST00000253024 ACYP1P07311 99 aa14.51□□□□□ -0.09
TRIM28-201ENST00000253024 OXLD1Q5BKU9 147 aa14.51□□□□□ -0.09
TRIM28-201ENST00000253024 KLK5Q9Y337 293 aaPredicted RBP14.5□□□□□ -0.09
TRIM28-201ENST00000253024 IGHV4-30-4P0DP06 118 aa14.49□□□□□ -0.09
TRIM28-201ENST00000253024 CYSRT1A8MQ03 144 aa14.49□□□□□ -0.09
TRIM28-201ENST00000253024 HIST1H4AP62805 103 aaKnown RBP14.49□□□□□ -0.09
TRIM28-201ENST00000253024 NBEAL1Q6ZS30 2694 aa14.49□□□□□ -0.09
TRIM28-201ENST00000253024 ANK2Q01484 3957 aa14.48□□□□□ -0.09
TRIM28-201ENST00000253024 BAHCC1Q9P281 2608 aa14.48□□□□□ -0.09
TRIM28-201ENST00000253024 LYRM9A8MSI8 78 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 122.5 ms