RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 H3BNG1 76 aa9.11□□□□□ -0.95
USP40-201ENST00000251722 CYP4F30PQ9H0H9 118 aa9.11□□□□□ -0.95
USP40-201ENST00000251722 ATG2AQ2TAZ0 1938 aa9.11□□□□□ -0.95
USP40-201ENST00000251722 Q6ZTC4 211 aa9.11□□□□□ -0.95
USP40-201ENST00000251722 PRR15Q8IV56 129 aa9.1□□□□□ -0.95
USP40-201ENST00000251722 REG3GQ6UW15 175 aa9.1□□□□□ -0.95
USP40-201ENST00000251722 IGKV2-28A0A075B6P5 120 aa9.1□□□□□ -0.95
USP40-201ENST00000251722 A0A096LNJ9 63 aa9.1□□□□□ -0.95
USP40-201ENST00000251722 IGKV2D-28P01615 120 aa9.1□□□□□ -0.95
USP40-201ENST00000251722 NAV2Q8IVL1 2488 aa9.09□□□□□ -0.95
USP40-201ENST00000251722 LINC00242Q5T6M2 205 aa9.09□□□□□ -0.95
USP40-201ENST00000251722 C7orf65Q6ZTY9 151 aa9.09□□□□□ -0.95
USP40-201ENST00000251722 LINC00208Q96KT6 92 aa9.09□□□□□ -0.95
USP40-201ENST00000251722 HCG22E2RYF7 251 aa9.09□□□□□ -0.95
USP40-201ENST00000251722 Q6ZQY7 126 aa9.09□□□□□ -0.95
USP40-201ENST00000251722 SPAG11AQ6PDA7 123 aa9.08□□□□□ -0.96
USP40-201ENST00000251722 CPAMD8Q8IZJ3 1885 aa9.07□□□□□ -0.96
USP40-201ENST00000251722 LYPD5Q6UWN5 251 aa9.07□□□□□ -0.96
USP40-201ENST00000251722 A0A096LNI7 61 aa9.07□□□□□ -0.96
USP40-201ENST00000251722 ATP11AUNQ6ZP68 121 aa9.07□□□□□ -0.96
USP40-201ENST00000251722 MDFIQ99750 246 aa9.07□□□□□ -0.96
USP40-201ENST00000251722 WFDC10BQ8IUB3 73 aa9.07□□□□□ -0.96
USP40-201ENST00000251722 AMELXQ99217 191 aa9.07□□□□□ -0.96
USP40-201ENST00000251722 NOTCH2Q04721 2471 aa9.06□□□□□ -0.96
USP40-201ENST00000251722 LINC01547P58512 204 aaPredicted RBP9.06□□□□□ -0.96
USP40-201ENST00000251722 CACNA1AO00555 2505 aa9.06□□□□□ -0.96
USP40-201ENST00000251722 SMIM1B2RUZ4 78 aa9.06□□□□□ -0.96
USP40-201ENST00000251722 COL4A2P08572 1712 aa9.06□□□□□ -0.96
USP40-201ENST00000251722 SPG11Q96JI7 2443 aa9.05□□□□□ -0.96
USP40-201ENST00000251722 KIAA1549Q9HCM3 1950 aa9.05□□□□□ -0.96
USP40-201ENST00000251722 ATRXP46100 2492 aa9.05□□□□□ -0.96
USP40-201ENST00000251722 H3BS24 57 aa9.05□□□□□ -0.96
USP40-201ENST00000251722 RETNLBQ9BQ08 111 aa9.05□□□□□ -0.96
USP40-201ENST00000251722 ERC2-IT1O76042 136 aa9.04□□□□□ -0.96
USP40-201ENST00000251722 Q8N814 137 aa9.04□□□□□ -0.96
USP40-201ENST00000251722 RAI1Q7Z5J4 1906 aaPredicted RBP9.03□□□□□ -0.96
USP40-201ENST00000251722 LINC01556Q5JQF7 62 aa9.02□□□□□ -0.96
USP40-201ENST00000251722 POM121L12Q8N7R1 296 aa9.02□□□□□ -0.96
USP40-201ENST00000251722 UNQ6190/PRO20217Q6UXQ8 127 aa9.02□□□□□ -0.97
USP40-201ENST00000251722 RPL37AP8A6NKH3 93 aa9.02□□□□□ -0.97
USP40-201ENST00000251722 C3orf84H3BNL1 204 aa9.02□□□□□ -0.97
USP40-201ENST00000251722 C6orf223Q8N319 242 aa9.02□□□□□ -0.97
USP40-201ENST00000251722 LINC01546A6NGU7 62 aa9.01□□□□□ -0.97
USP40-201ENST00000251722 CSPG4Q6UVK1 2322 aa9.01□□□□□ -0.97
USP40-201ENST00000251722 TSPEAR-AS2P59090 65 aa9.01□□□□□ -0.97
USP40-201ENST00000251722 IGLV9-49A0A0B4J1Y8 123 aa9□□□□□ -0.97
USP40-201ENST00000251722 WFDC13Q8IUB5 93 aa9□□□□□ -0.97
USP40-201ENST00000251722 PTPN13Q12923 2485 aa9□□□□□ -0.97
USP40-201ENST00000251722 TNCP24821 2201 aa9□□□□□ -0.97
USP40-201ENST00000251722 A0A087WYN8 130 aa9□□□□□ -0.97
USP40-201ENST00000251722 KLKP1Q107X0 134 aa9□□□□□ -0.97
USP40-201ENST00000251722 DSCAML1Q8TD84 2053 aa8.99□□□□□ -0.97
USP40-201ENST00000251722 SPINK6Q6UWN8 80 aa8.98□□□□□ -0.97
USP40-201ENST00000251722 PRRC2AP48634 2157 aaKnown RBP8.98□□□□□ -0.97
USP40-201ENST00000251722 IGLV4-60A0A075B6I1 120 aa8.98□□□□□ -0.97
USP40-201ENST00000251722 KLK9Q2XQG4 91 aa8.97□□□□□ -0.97
USP40-201ENST00000251722 HCFC1P51610 2035 aa8.97□□□□□ -0.97
USP40-201ENST00000251722 C1orf137Q5JT78 98 aa8.96□□□□□ -0.97
USP40-201ENST00000251722 EXPH5Q8NEV8 1989 aa8.96□□□□□ -0.97
USP40-201ENST00000251722 C11orf72Q8NBR9 251 aa8.95□□□□□ -0.98
USP40-201ENST00000251722 NCOR2Q9Y618 2525 aa8.95□□□□□ -0.98
USP40-201ENST00000251722 ADAMTSL4-AS1Q5T5F5 129 aa8.94□□□□□ -0.98
USP40-201ENST00000251722 GAS8-AS1O95177 125 aa8.94□□□□□ -0.98
USP40-201ENST00000251722 H3BPC8 53 aa8.93□□□□□ -0.98
USP40-201ENST00000251722 KRTAP24-1Q3LI83 254 aa8.93□□□□□ -0.98
USP40-201ENST00000251722 C9orf116Q5BN46 136 aaPredicted RBP8.93□□□□□ -0.98
USP40-201ENST00000251722 RBM12B-AS1Q9P1G2 102 aa8.93□□□□□ -0.98
USP40-201ENST00000251722 Q9UF83 564 aa8.93□□□□□ -0.98
USP40-201ENST00000251722 PRR14LQ5THK1 2151 aa8.93□□□□□ -0.98
USP40-201ENST00000251722 Q9BRP9 147 aa8.92□□□□□ -0.98
USP40-201ENST00000251722 H0Y9P7 68 aa8.92□□□□□ -0.98
USP40-201ENST00000251722 A8MUN3 132 aa8.91□□□□□ -0.98
USP40-201ENST00000251722 COX6A2Q02221 97 aa8.91□□□□□ -0.98
USP40-201ENST00000251722 A0A1B0GW54 56 aa8.91□□□□□ -0.98
USP40-201ENST00000251722 CIRBP-AS1Q8TBR5 109 aa8.91□□□□□ -0.98
USP40-201ENST00000251722 WWC2-AS2Q96NR7 200 aa8.9□□□□□ -0.98
USP40-201ENST00000251722 H7BZZ5 65 aa8.9□□□□□ -0.98
USP40-201ENST00000251722 KIF25-AS1Q9Y6Z4 181 aa8.9□□□□□ -0.98
USP40-201ENST00000251722 HIVEP3Q5T1R4 2406 aa8.89□□□□□ -0.99
USP40-201ENST00000251722 SMCR5Q8TEV8 140 aa8.89□□□□□ -0.99
USP40-201ENST00000251722 SONP18583 2426 aaKnown RBP8.87□□□□□ -0.99
USP40-201ENST00000251722 Q6ZSN1 163 aa8.87□□□□□ -0.99
USP40-201ENST00000251722 IGF2RP11717 2491 aa8.87□□□□□ -0.99
USP40-201ENST00000251722 TANC2Q9HCD6 1990 aa8.87□□□□□ -0.99
USP40-201ENST00000251722 Q6ZRU5 148 aa8.87□□□□□ -0.99
USP40-201ENST00000251722 FAM229AH3BQW9 127 aa8.87□□□□□ -0.99
USP40-201ENST00000251722 Q5XG85 94 aa8.87□□□□□ -0.99
USP40-201ENST00000251722 IGLV5-39A0A0G2JS06 123 aa8.86□□□□□ -0.99
USP40-201ENST00000251722 EML5Q05BV3 1969 aa8.86□□□□□ -0.99
USP40-201ENST00000251722 LINC00575Q6W349 94 aa8.85□□□□□ -0.99
USP40-201ENST00000251722 WNK1Q9H4A3 2382 aa8.85□□□□□ -0.99
USP40-201ENST00000251722 TRAV22A0A0B4J277 110 aa8.85□□□□□ -0.99
USP40-201ENST00000251722 X6R8D5 127 aa8.85□□□□□ -0.99
USP40-201ENST00000251722 TET2Q6N021 2002 aaPredicted RBP8.85□□□□□ -0.99
USP40-201ENST00000251722 TM2D3Q9BRN9 247 aa8.84□□□□□ -0.99
USP40-201ENST00000251722 C22orf24Q9Y442 160 aa8.84□□□□□ -0.99
USP40-201ENST00000251722 LOC101927531A0A1B0GV80 90 aa8.84□□□□□ -0.99
USP40-201ENST00000251722 ELOF1P60002 83 aaKnown RBP8.84□□□□□ -0.99
USP40-201ENST00000251722 NBDYA0A0U1RRE5 68 aa8.83□□□□□ -1
USP40-201ENST00000251722 A0A1B0GU69 56 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 197.9 ms