RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 BAALC-AS2P0C853 105 aa11.97□□□□□ -0.49
FOXA1-201ENST00000250448 SMCR5Q8TEV8 140 aa11.97□□□□□ -0.49
FOXA1-201ENST00000250448 FAM218AQ96MZ4 157 aa11.97□□□□□ -0.49
FOXA1-201ENST00000250448 PKIGQ9Y2B9 76 aa11.97□□□□□ -0.49
FOXA1-201ENST00000250448 C9orf66Q5T8R8 295 aa11.96□□□□□ -0.5
FOXA1-201ENST00000250448 IMUPQ9GZP8 106 aa11.96□□□□□ -0.5
FOXA1-201ENST00000250448 FAM236AA0A1B0GUQ0 79 aa11.94□□□□□ -0.5
FOXA1-201ENST00000250448 FAM236BA0A1B0GV22 79 aa11.94□□□□□ -0.5
FOXA1-201ENST00000250448 UBE2L6O14933 153 aa11.94□□□□□ -0.5
FOXA1-201ENST00000250448 FAM222AQ5U5X8 452 aa11.94□□□□□ -0.5
FOXA1-201ENST00000250448 LINC00643Q86TS7 51 aa11.94□□□□□ -0.5
FOXA1-201ENST00000250448 TMEM243Q9BU79 118 aa11.94□□□□□ -0.5
FOXA1-201ENST00000250448 C22orf24Q9Y442 160 aa11.94□□□□□ -0.5
FOXA1-201ENST00000250448 TRAV13-2A0A0B4J235 113 aa11.93□□□□□ -0.5
FOXA1-201ENST00000250448 CRPP02741 224 aa11.93□□□□□ -0.5
FOXA1-201ENST00000250448 CMC4P56277 68 aaPredicted RBP11.92□□□□□ -0.5
FOXA1-201ENST00000250448 RPL28P46779 137 aaKnown RBP11.92□□□□□ -0.5
FOXA1-201ENST00000250448 COX7B2Q8TF08 81 aa11.91□□□□□ -0.5
FOXA1-201ENST00000250448 SDIM1Q6ZPB5 146 aa11.91□□□□□ -0.5
FOXA1-201ENST00000250448 INAFM2P0DMQ5 153 aa11.9□□□□□ -0.5
FOXA1-201ENST00000250448 OXLD1Q5BKU9 147 aa11.9□□□□□ -0.5
FOXA1-201ENST00000250448 MIR7-3HGQ8N6C7 128 aa11.9□□□□□ -0.5
FOXA1-201ENST00000250448 NOP10Q9NPE3 64 aaKnown RBP11.9□□□□□ -0.5
FOXA1-201ENST00000250448 LINC00337Q8N6G1 96 aa11.9□□□□□ -0.5
FOXA1-201ENST00000250448 Q9HAA7 133 aa11.9□□□□□ -0.5
FOXA1-201ENST00000250448 MALP21145 153 aa11.89□□□□□ -0.51
FOXA1-201ENST00000250448 SND1-IT1Q9HBX3 110 aa11.89□□□□□ -0.51
FOXA1-201ENST00000250448 NOTCH1P46531 2555 aa11.88□□□□□ -0.51
FOXA1-201ENST00000250448 IGKV2-28A0A075B6P5 120 aa11.88□□□□□ -0.51
FOXA1-201ENST00000250448 IGKV2D-28P01615 120 aa11.88□□□□□ -0.51
FOXA1-201ENST00000250448 C9orf153Q5TBE3 101 aa11.88□□□□□ -0.51
FOXA1-201ENST00000250448 WFDC9Q8NEX5 89 aa11.88□□□□□ -0.51
FOXA1-201ENST00000250448 TOMM7Q9P0U1 55 aa11.88□□□□□ -0.51
FOXA1-201ENST00000250448 V9GYY9 64 aa11.88□□□□□ -0.51
FOXA1-201ENST00000250448 LOC100131303A0A0U1RQF7 123 aa11.87□□□□□ -0.51
FOXA1-201ENST00000250448 CSNK1G2-AS1Q8NCQ2 148 aa11.87□□□□□ -0.51
FOXA1-201ENST00000250448 A0A1B0GX51 115 aa11.87□□□□□ -0.51
FOXA1-201ENST00000250448 GAGE2AQ6NT46 116 aa11.87□□□□□ -0.51
FOXA1-201ENST00000250448 OVOL2Q9BRP0 275 aa11.87□□□□□ -0.51
FOXA1-201ENST00000250448 IGKV3OR2-268A0A0C4DH90 116 aa11.85□□□□□ -0.51
FOXA1-201ENST00000250448 TRGV2A0A075B6R0 118 aa11.85□□□□□ -0.51
FOXA1-201ENST00000250448 LINC00158P58513 81 aa11.85□□□□□ -0.51
FOXA1-201ENST00000250448 CXCL5P42830 114 aa11.85□□□□□ -0.51
FOXA1-201ENST00000250448 SMIM11BQ8TCY0 68 aa11.85□□□□□ -0.51
FOXA1-201ENST00000250448 CMYA5Q8N3K9 4069 aa11.84□□□□□ -0.51
FOXA1-201ENST00000250448 PLAC8L1A1L4L8 177 aa11.84□□□□□ -0.51
FOXA1-201ENST00000250448 C16orf74Q96GX8 76 aa11.84□□□□□ -0.51
FOXA1-201ENST00000250448 A0A087WYN8 130 aa11.84□□□□□ -0.51
FOXA1-201ENST00000250448 DNAL4O96015 105 aa11.84□□□□□ -0.51
FOXA1-201ENST00000250448 CCL18P55774 89 aa11.83□□□□□ -0.52
FOXA1-201ENST00000250448 TRBV6-4A0A1B0GX49 114 aa11.83□□□□□ -0.52
FOXA1-201ENST00000250448 C5orf38Q86SI9 138 aa11.83□□□□□ -0.52
FOXA1-201ENST00000250448 ATP5G1P05496 136 aa11.82□□□□□ -0.52
FOXA1-201ENST00000250448 IGLV4-60A0A075B6I1 120 aa11.82□□□□□ -0.52
FOXA1-201ENST00000250448 PRO0628Q9UI54 55 aa11.81□□□□□ -0.52
FOXA1-201ENST00000250448 TRGV4A0A0C4DH28 118 aa11.81□□□□□ -0.52
FOXA1-201ENST00000250448 C3orf22Q8N5N4 141 aa11.81□□□□□ -0.52
FOXA1-201ENST00000250448 IGHV3OR16-9A0A0B4J2B5 98 aa11.81□□□□□ -0.52
FOXA1-201ENST00000250448 IBA57-AS1B1ANH7 110 aa11.81□□□□□ -0.52
FOXA1-201ENST00000250448 KRTAP10-11P60412 298 aa11.81□□□□□ -0.52
FOXA1-201ENST00000250448 DEFB135Q30KP9 77 aa11.81□□□□□ -0.52
FOXA1-201ENST00000250448 Q5XG85 94 aa11.81□□□□□ -0.52
FOXA1-201ENST00000250448 H0YGX0 51 aa11.8□□□□□ -0.52
FOXA1-201ENST00000250448 RPS28P62857 69 aaKnown RBP11.8□□□□□ -0.52
FOXA1-201ENST00000250448 NBEAL1Q6ZS30 2694 aa11.79□□□□□ -0.52
FOXA1-201ENST00000250448 TRBV6-8A0A0A6YYG3 113 aa11.79□□□□□ -0.52
FOXA1-201ENST00000250448 C9orf129Q5T035 196 aaKnown RBP11.79□□□□□ -0.52
FOXA1-201ENST00000250448 A0A087WZ39 114 aa11.78□□□□□ -0.52
FOXA1-201ENST00000250448 UQCRQO14949 82 aa11.78□□□□□ -0.52
FOXA1-201ENST00000250448 DEFB4AO15263 64 aa11.78□□□□□ -0.52
FOXA1-201ENST00000250448 OXTP01178 125 aa11.78□□□□□ -0.52
FOXA1-201ENST00000250448 PFN2P35080 140 aa11.78□□□□□ -0.52
FOXA1-201ENST00000250448 C14orf132Q9NPU4 83 aa11.78□□□□□ -0.52
FOXA1-201ENST00000250448 IGHV4-30-4P0DP06 118 aa11.77□□□□□ -0.52
FOXA1-201ENST00000250448 ANK2Q01484 3957 aa11.77□□□□□ -0.53
FOXA1-201ENST00000250448 LECT2O14960 151 aa11.77□□□□□ -0.53
FOXA1-201ENST00000250448 LINC00336Q6ZUF6 198 aa11.77□□□□□ -0.53
FOXA1-201ENST00000250448 PAX4O43316 350 aa11.76□□□□□ -0.53
FOXA1-201ENST00000250448 OBSCN-AS1Q96MR7 158 aa11.76□□□□□ -0.53
FOXA1-201ENST00000250448 FHL2Q14192 279 aa11.76□□□□□ -0.53
FOXA1-201ENST00000250448 LINC00526Q96FQ7 95 aa11.76□□□□□ -0.53
FOXA1-201ENST00000250448 MGAM2Q2M2H8 2515 aa11.76□□□□□ -0.53
FOXA1-201ENST00000250448 X6R8D5 127 aa11.75□□□□□ -0.53
FOXA1-201ENST00000250448 FAM236DA0A1B0GTK5 79 aa11.75□□□□□ -0.53
FOXA1-201ENST00000250448 FAM236CP0DP71 79 aa11.75□□□□□ -0.53
FOXA1-201ENST00000250448 HIST1H4AP62805 103 aaKnown RBP11.75□□□□□ -0.53
FOXA1-201ENST00000250448 DEFB130BP0DP73 79 aa11.74□□□□□ -0.53
FOXA1-201ENST00000250448 DEFB130AP0DP74 79 aa11.74□□□□□ -0.53
FOXA1-201ENST00000250448 COX7CP15954 63 aa11.73□□□□□ -0.53
FOXA1-201ENST00000250448 C11orf68Q9H3H3 251 aaKnown RBP11.73□□□□□ -0.53
FOXA1-201ENST00000250448 LINC00959A0A1B0GUT2 108 aa11.73□□□□□ -0.53
FOXA1-201ENST00000250448 PRB2P02812 416 aaPredicted RBP11.72□□□□□ -0.53
FOXA1-201ENST00000250448 ATOX1O00244 68 aa11.72□□□□□ -0.53
FOXA1-201ENST00000250448 Q6JHZ5 121 aa11.72□□□□□ -0.53
FOXA1-201ENST00000250448 MDFIQ99750 246 aa11.71□□□□□ -0.53
FOXA1-201ENST00000250448 NCR3O14931 201 aa11.71□□□□□ -0.54
FOXA1-201ENST00000250448 APOC4P55056 127 aa11.71□□□□□ -0.54
FOXA1-201ENST00000250448 C6orf226Q5I0X4 101 aa11.71□□□□□ -0.54
FOXA1-201ENST00000250448 C2orf48Q96LS8 159 aa11.71□□□□□ -0.54
FOXA1-201ENST00000250448 LINC00846Q9NV44 126 aa11.71□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms