RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 SMIM9A6NGZ8 99 aa11.44□□□□□ -0.58
HOXD3-201ENST00000249440 ACYP1P07311 99 aa11.44□□□□□ -0.58
HOXD3-201ENST00000249440 BAALC-AS2P0C853 105 aa11.44□□□□□ -0.58
HOXD3-201ENST00000249440 TTC32Q5I0X7 151 aa11.44□□□□□ -0.58
HOXD3-201ENST00000249440 FAM218AQ96MZ4 157 aa11.44□□□□□ -0.58
HOXD3-201ENST00000249440 A0A1B0GUV1 79 aa11.43□□□□□ -0.58
HOXD3-201ENST00000249440 KRTAP10-3P60369 221 aa11.43□□□□□ -0.58
HOXD3-201ENST00000249440 FBN1P35555 2871 aaKnown RBP11.43□□□□□ -0.58
HOXD3-201ENST00000249440 CCL18P55774 89 aa11.43□□□□□ -0.58
HOXD3-201ENST00000249440 PRO0255Q9UI72 69 aa11.43□□□□□ -0.58
HOXD3-201ENST00000249440 SS18Q15532 418 aa11.42□□□□□ -0.58
HOXD3-201ENST00000249440 C6orf226Q5I0X4 101 aa11.42□□□□□ -0.58
HOXD3-201ENST00000249440 X6R8D5 127 aa11.42□□□□□ -0.58
HOXD3-201ENST00000249440 PFN2P35080 140 aa11.42□□□□□ -0.58
HOXD3-201ENST00000249440 NDUFV3P56181 108 aaKnown RBP11.42□□□□□ -0.58
HOXD3-201ENST00000249440 XCL1P47992 114 aa11.4□□□□□ -0.58
HOXD3-201ENST00000249440 ATRQ13535 2644 aa11.4□□□□□ -0.58
HOXD3-201ENST00000249440 SMIM11BQ8TCY0 68 aa11.4□□□□□ -0.59
HOXD3-201ENST00000249440 VWFP04275 2813 aa11.39□□□□□ -0.59
HOXD3-201ENST00000249440 H0YGX0 51 aa11.38□□□□□ -0.59
HOXD3-201ENST00000249440 PAX4O43316 350 aa11.38□□□□□ -0.59
HOXD3-201ENST00000249440 NHLRC4P0CG21 123 aaPredicted RBP11.38□□□□□ -0.59
HOXD3-201ENST00000249440 Q8IZM0 81 aa11.38□□□□□ -0.59
HOXD3-201ENST00000249440 Q9HAA7 133 aa11.38□□□□□ -0.59
HOXD3-201ENST00000249440 TRRAPQ9Y4A5 3859 aa11.38□□□□□ -0.59
HOXD3-201ENST00000249440 LYRM9A8MSI8 78 aa11.37□□□□□ -0.59
HOXD3-201ENST00000249440 DNAL4O96015 105 aa11.37□□□□□ -0.59
HOXD3-201ENST00000249440 INAFM2P0DMQ5 153 aa11.37□□□□□ -0.59
HOXD3-201ENST00000249440 MALP21145 153 aa11.37□□□□□ -0.59
HOXD3-201ENST00000249440 LINC01561Q8N1V8 128 aa11.37□□□□□ -0.59
HOXD3-201ENST00000249440 C22orf24Q9Y442 160 aa11.37□□□□□ -0.59
HOXD3-201ENST00000249440 A0A096LPF7 62 aa11.36□□□□□ -0.59
HOXD3-201ENST00000249440 C11orf68Q9H3H3 251 aaKnown RBP11.36□□□□□ -0.59
HOXD3-201ENST00000249440 C9orf66Q5T8R8 295 aa11.36□□□□□ -0.59
HOXD3-201ENST00000249440 NBEAL2Q6ZNJ1 2754 aa11.35□□□□□ -0.59
HOXD3-201ENST00000249440 CLPSL2Q6UWE3 100 aa11.35□□□□□ -0.59
HOXD3-201ENST00000249440 TRBV7-7A0A0K0K1E9 115 aa11.35□□□□□ -0.59
HOXD3-201ENST00000249440 A0A087WYN8 130 aa11.34□□□□□ -0.59
HOXD3-201ENST00000249440 OR13C6PQ8NH95 151 aa11.34□□□□□ -0.59
HOXD3-201ENST00000249440 DEFB135Q30KP9 77 aa11.32□□□□□ -0.6
HOXD3-201ENST00000249440 LINC00269Q8N2A0 174 aa11.32□□□□□ -0.6
HOXD3-201ENST00000249440 IMUPQ9GZP8 106 aa11.32□□□□□ -0.6
HOXD3-201ENST00000249440 CD164L2Q6UWJ8 174 aa11.31□□□□□ -0.6
HOXD3-201ENST00000249440 LINC00643Q86TS7 51 aa11.31□□□□□ -0.6
HOXD3-201ENST00000249440 APOC4P55056 127 aa11.3□□□□□ -0.6
HOXD3-201ENST00000249440 SDIM1Q6ZPB5 146 aa11.3□□□□□ -0.6
HOXD3-201ENST00000249440 LECT2O14960 151 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 DEFB4AO15263 64 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 ATP5G1P05496 136 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 CXCL5P42830 114 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 COX17Q14061 63 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 SPATA3Q8NHX4 192 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 SMCR5Q8TEV8 140 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 ANGP03950 147 aaKnown RBP11.29□□□□□ -0.6
HOXD3-201ENST00000249440 DAD1P61803 113 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 GAGE2AQ6NT46 116 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 CFAP161Q6P656 301 aa11.29□□□□□ -0.6
HOXD3-201ENST00000249440 REG3AQ06141 175 aa11.28□□□□□ -0.6
HOXD3-201ENST00000249440 CHCHD10Q8WYQ3 142 aaPredicted RBP11.28□□□□□ -0.6
HOXD3-201ENST00000249440 IGHV4-28A0A0C4DH34 117 aa11.27□□□□□ -0.6
HOXD3-201ENST00000249440 KIAA0087Q14695 138 aa11.27□□□□□ -0.6
HOXD3-201ENST00000249440 STAB1Q9NY15 2570 aa11.27□□□□□ -0.61
HOXD3-201ENST00000249440 IGLV10-54A0A075B6I4 117 aa11.25□□□□□ -0.61
HOXD3-201ENST00000249440 B5MCH6 92 aa11.25□□□□□ -0.61
HOXD3-201ENST00000249440 NDUFC2O95298 119 aa11.25□□□□□ -0.61
HOXD3-201ENST00000249440 CCDC179H3BU77 68 aa11.24□□□□□ -0.61
HOXD3-201ENST00000249440 MIFP14174 115 aa11.24□□□□□ -0.61
HOXD3-201ENST00000249440 OBSCN-AS1Q96MR7 158 aa11.24□□□□□ -0.61
HOXD3-201ENST00000249440 Q8N3U1 123 aa11.23□□□□□ -0.61
HOXD3-201ENST00000249440 ORMDL1Q9P0S3 153 aa11.23□□□□□ -0.61
HOXD3-201ENST00000249440 C9orf129Q5T035 196 aaKnown RBP11.23□□□□□ -0.61
HOXD3-201ENST00000249440 Q8NAQ8 132 aa11.23□□□□□ -0.61
HOXD3-201ENST00000249440 TMEM126AQ9H061 195 aa11.23□□□□□ -0.61
HOXD3-201ENST00000249440 C14orf132Q9NPU4 83 aa11.23□□□□□ -0.61
HOXD3-201ENST00000249440 COL6A5A8TX70 2615 aa11.22□□□□□ -0.61
HOXD3-201ENST00000249440 CELA1Q9UNI1 258 aa11.22□□□□□ -0.61
HOXD3-201ENST00000249440 FAM236AA0A1B0GUQ0 79 aa11.21□□□□□ -0.61
HOXD3-201ENST00000249440 FAM236BA0A1B0GV22 79 aa11.21□□□□□ -0.61
HOXD3-201ENST00000249440 A0A1B0GX51 115 aa11.21□□□□□ -0.61
HOXD3-201ENST00000249440 KLK5Q9Y337 293 aaPredicted RBP11.21□□□□□ -0.61
HOXD3-201ENST00000249440 SPART-AS1P0CW21 52 aa11.21□□□□□ -0.62
HOXD3-201ENST00000249440 PRR3P79522 188 aaKnown RBP11.21□□□□□ -0.62
HOXD3-201ENST00000249440 SLPIP03973 132 aa11.2□□□□□ -0.62
HOXD3-201ENST00000249440 NANOS2P60321 138 aaKnown RBP11.2□□□□□ -0.62
HOXD3-201ENST00000249440 PKD1L1Q8TDX9 2849 aa11.2□□□□□ -0.62
HOXD3-201ENST00000249440 LELP1Q5T871 98 aa11.2□□□□□ -0.62
HOXD3-201ENST00000249440 C9orf116Q5BN46 136 aaPredicted RBP11.19□□□□□ -0.62
HOXD3-201ENST00000249440 NCR3O14931 201 aa11.18□□□□□ -0.62
HOXD3-201ENST00000249440 LINC00167Q96N53 147 aa11.18□□□□□ -0.62
HOXD3-201ENST00000249440 SS18L2Q9UHA2 77 aa11.18□□□□□ -0.62
HOXD3-201ENST00000249440 CMYA5Q8N3K9 4069 aa11.18□□□□□ -0.62
HOXD3-201ENST00000249440 HTN3P15516 51 aa11.18□□□□□ -0.62
HOXD3-201ENST00000249440 Q8N814 137 aa11.18□□□□□ -0.62
HOXD3-201ENST00000249440 MUC7Q8TAX7 377 aa11.17□□□□□ -0.62
HOXD3-201ENST00000249440 SPAG11BQ08648 103 aa11.15□□□□□ -0.62
HOXD3-201ENST00000249440 KRTAP24-1Q3LI83 254 aa11.15□□□□□ -0.62
HOXD3-201ENST00000249440 TMEM256-PLSCR3K7ERE1 68 aa11.15□□□□□ -0.62
HOXD3-201ENST00000249440 JMJD7-PLA2G4BH0Y9G9 81 aa11.14□□□□□ -0.63
HOXD3-201ENST00000249440 S100A7L2Q5SY68 101 aa11.14□□□□□ -0.63
HOXD3-201ENST00000249440 PRR34Q9NV39 138 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 90.1 ms