RNA–Protein interactions for RNA: ENST00000231656.12

CDX1-201, Transcript of caudal type homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CDX1, Length 1,758 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-201ENST00000231656 ESRGQ1W209 222 aa15.37■□□□□ 0.05
CDX1-201ENST00000231656 MEIG1Q5JSS6 88 aa15.37■□□□□ 0.05
CDX1-201ENST00000231656 LINC00308Q8TCZ7 52 aa15.36■□□□□ 0.05
CDX1-201ENST00000231656 A0A0U1RRA0 63 aa15.35■□□□□ 0.05
CDX1-201ENST00000231656 CD164L2Q6UWJ8 174 aa15.35■□□□□ 0.05
CDX1-201ENST00000231656 CHCHD10Q8WYQ3 142 aaPredicted RBP15.34■□□□□ 0.05
CDX1-201ENST00000231656 SFTA2Q6UW10 78 aa15.34■□□□□ 0.05
CDX1-201ENST00000231656 ERG28Q9UKR5 140 aa15.34■□□□□ 0.05
CDX1-201ENST00000231656 LOC107984156A0A0G2JMH3 177 aa15.33■□□□□ 0.04
CDX1-201ENST00000231656 SOSTDC1Q6X4U4 206 aa15.33■□□□□ 0.04
CDX1-201ENST00000231656 ARL17AQ8IVW1 177 aa15.33■□□□□ 0.04
CDX1-201ENST00000231656 NUPR2A6NF83 97 aa15.31■□□□□ 0.04
CDX1-201ENST00000231656 PPDPFQ9H3Y8 114 aa15.31■□□□□ 0.04
CDX1-201ENST00000231656 PRR34Q9NV39 138 aa15.31■□□□□ 0.04
CDX1-201ENST00000231656 IGLV10-54A0A075B6I4 117 aa15.31■□□□□ 0.04
CDX1-201ENST00000231656 H3BMG7 143 aa15.31■□□□□ 0.04
CDX1-201ENST00000231656 COPS9Q8WXC6 57 aa15.31■□□□□ 0.04
CDX1-201ENST00000231656 LYRM7Q5U5X0 104 aa15.3■□□□□ 0.04
CDX1-201ENST00000231656 Q8IZM0 81 aa15.3■□□□□ 0.04
CDX1-201ENST00000231656 COX7A2LO14548 114 aa15.29■□□□□ 0.04
CDX1-201ENST00000231656 H7C2G1 150 aa15.29■□□□□ 0.04
CDX1-201ENST00000231656 FOXI1Q12951 378 aa15.29■□□□□ 0.04
CDX1-201ENST00000231656 KLK12Q9UKR0 248 aa15.29■□□□□ 0.04
CDX1-201ENST00000231656 APLNQ9ULZ1 77 aa15.29■□□□□ 0.04
CDX1-201ENST00000231656 WFDC10BQ8IUB3 73 aa15.28■□□□□ 0.04
CDX1-201ENST00000231656 KLK5Q9Y337 293 aaPredicted RBP15.28■□□□□ 0.04
CDX1-201ENST00000231656 IBA57-AS1B1ANH7 110 aa15.27■□□□□ 0.04
CDX1-201ENST00000231656 C6orf226Q5I0X4 101 aa15.27■□□□□ 0.04
CDX1-201ENST00000231656 CCL18P55774 89 aa15.26■□□□□ 0.03
CDX1-201ENST00000231656 ENHOQ6UWT2 76 aa15.26■□□□□ 0.03
CDX1-201ENST00000231656 STARD9Q9P2P6 4700 aa15.26■□□□□ 0.03
CDX1-201ENST00000231656 LINC00588Q9Y4M8 146 aa15.26■□□□□ 0.03
CDX1-201ENST00000231656 TENM2Q9NT68 2774 aa15.26■□□□□ 0.03
CDX1-201ENST00000231656 PSMB2P49721 201 aa15.26■□□□□ 0.03
CDX1-201ENST00000231656 PRO0461Q9UI25 63 aa15.26■□□□□ 0.03
CDX1-201ENST00000231656 TCL1BO95988 128 aa15.25■□□□□ 0.03
CDX1-201ENST00000231656 KIAA0087Q14695 138 aa15.25■□□□□ 0.03
CDX1-201ENST00000231656 Q1RN00 199 aa15.25■□□□□ 0.03
CDX1-201ENST00000231656 MIR7-3HGQ8N6C7 128 aa15.25■□□□□ 0.03
CDX1-201ENST00000231656 LYSTQ99698 3801 aa15.25■□□□□ 0.03
CDX1-201ENST00000231656 F8W1H4 67 aa15.24■□□□□ 0.03
CDX1-201ENST00000231656 PLECQ15149 4684 aaKnown RBP15.24■□□□□ 0.03
CDX1-201ENST00000231656 TRBV20-1A0A075B6N2 111 aa15.24■□□□□ 0.03
CDX1-201ENST00000231656 TRBV30A0A0K0K1B3 111 aa15.23■□□□□ 0.03
CDX1-201ENST00000231656 GAGE12HA6NDE8 117 aa15.23■□□□□ 0.03
CDX1-201ENST00000231656 SCGB1C2P0DMR2 95 aa15.23■□□□□ 0.03
CDX1-201ENST00000231656 LINC00158P58513 81 aa15.23■□□□□ 0.03
CDX1-201ENST00000231656 MALP21145 153 aa15.22■□□□□ 0.03
CDX1-201ENST00000231656 RPL13AP40429 203 aaKnown RBP15.22■□□□□ 0.03
CDX1-201ENST00000231656 OCIAD2Q56VL3 154 aa15.21■□□□□ 0.03
CDX1-201ENST00000231656 TRIAP1O43715 76 aa15.21■□□□□ 0.02
CDX1-201ENST00000231656 WFDC2Q14508 124 aa15.21■□□□□ 0.02
CDX1-201ENST00000231656 C2orf82Q6UX34 121 aa15.21■□□□□ 0.02
CDX1-201ENST00000231656 MUC7Q8TAX7 377 aa15.2■□□□□ 0.02
CDX1-201ENST00000231656 WWC2-AS2Q96NR7 200 aa15.19■□□□□ 0.02
CDX1-201ENST00000231656 PFN2P35080 140 aa15.19■□□□□ 0.02
CDX1-201ENST00000231656 CXCL5P42830 114 aa15.19■□□□□ 0.02
CDX1-201ENST00000231656 CKS1BP61024 79 aa15.19■□□□□ 0.02
CDX1-201ENST00000231656 LINC01556Q5JQF7 62 aa15.19■□□□□ 0.02
CDX1-201ENST00000231656 MTURNQ8N3F0 131 aa15.19■□□□□ 0.02
CDX1-201ENST00000231656 UBE2WQ96B02 151 aa15.19■□□□□ 0.02
CDX1-201ENST00000231656 UPK3BQ9BT76 320 aa15.19■□□□□ 0.02
CDX1-201ENST00000231656 TRAV8-4A0A0B4J246 113 aa15.18■□□□□ 0.02
CDX1-201ENST00000231656 CRPP02741 224 aa15.18■□□□□ 0.02
CDX1-201ENST00000231656 CFAP161Q6P656 301 aa15.18■□□□□ 0.02
CDX1-201ENST00000231656 DNAH10OSP0CZ25 163 aa15.16■□□□□ 0.02
CDX1-201ENST00000231656 SMCPP49901 116 aaPredicted RBP15.15■□□□□ 0.02
CDX1-201ENST00000231656 SND1-IT1Q9HBX3 110 aa15.15■□□□□ 0.02
CDX1-201ENST00000231656 SPAG11BQ08648 103 aa15.13■□□□□ 0.01
CDX1-201ENST00000231656 KRTAP26-1Q6PEX3 210 aa15.13■□□□□ 0.01
CDX1-201ENST00000231656 UBE2DNLQ8IWF7 75 aa15.13■□□□□ 0.01
CDX1-201ENST00000231656 IGKV2-28A0A075B6P5 120 aa15.12■□□□□ 0.01
CDX1-201ENST00000231656 IGKV2D-28P01615 120 aa15.12■□□□□ 0.01
CDX1-201ENST00000231656 COX17Q14061 63 aa15.11■□□□□ 0.01
CDX1-201ENST00000231656 ATXN8Q156A1 80 aa15.11■□□□□ 0.01
CDX1-201ENST00000231656 K7ERU9 68 aa15.1■□□□□ 0.01
CDX1-201ENST00000231656 COX6CP09669 75 aa15.1■□□□□ 0.01
CDX1-201ENST00000231656 DNAH1Q9P2D7 4330 aa15.1■□□□□ 0.01
CDX1-201ENST00000231656 TRAV13-2A0A0B4J235 113 aa15.09■□□□□ 0.01
CDX1-201ENST00000231656 C6orf223Q8N319 242 aa15.09■□□□□ 0.01
CDX1-201ENST00000231656 ETDBQ3ZM63 59 aa15.08■□□□□ 0.01
CDX1-201ENST00000231656 LINC00337Q8N6G1 96 aa15.08■□□□□ 0.01
CDX1-201ENST00000231656 C10orf25Q5T742 122 aa15.07■□□□□ 0
CDX1-201ENST00000231656 UNQ6190/PRO20217Q6UXQ8 127 aa15.06■□□□□ 0
CDX1-201ENST00000231656 LINC01620Q4KN68 170 aa15.06■□□□□ 0
CDX1-201ENST00000231656 C9orf116Q5BN46 136 aaPredicted RBP15.06■□□□□ 0
CDX1-201ENST00000231656 LINC00526Q96FQ7 95 aa15.06■□□□□ 0
CDX1-201ENST00000231656 VPS13DQ5THJ4 4388 aa15.05■□□□□ -0
CDX1-201ENST00000231656 CLEC2BQ92478 149 aa15.05■□□□□ -0
CDX1-201ENST00000231656 C9JAW5 83 aa15.04■□□□□ -0
CDX1-201ENST00000231656 CASC10Q5T4H9 136 aa15.04■□□□□ -0
CDX1-201ENST00000231656 LST1O00453 97 aa15.03■□□□□ -0
CDX1-201ENST00000231656 NTN5Q8WTR8 489 aaPredicted RBP15.03■□□□□ -0
CDX1-201ENST00000231656 SLC25A20O43772 301 aa15.02□□□□□ -0.01
CDX1-201ENST00000231656 GVQW2A0A096LPI5 108 aaPredicted RBP15.01□□□□□ -0.01
CDX1-201ENST00000231656 M0QXV9 152 aa15.01□□□□□ -0.01
CDX1-201ENST00000231656 C3orf84H3BNL1 204 aa15.01□□□□□ -0.01
CDX1-201ENST00000231656 RPL28P46779 137 aaKnown RBP15.01□□□□□ -0.01
CDX1-201ENST00000231656 C1orf43Q9BWL3 253 aa15.01□□□□□ -0.01
CDX1-201ENST00000231656 RNF151Q2KHN1 245 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms