RNA–Protein interactions for RNA: ENST00000011700.10

VPS13D-201, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 10,969 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-201ENST00000011700 Q8N6K4 173 aa4.45□□□□□ -1.7
VPS13D-201ENST00000011700 LINC00959A0A1B0GUT2 108 aa4.45□□□□□ -1.7
VPS13D-201ENST00000011700 ZNF843Q8N446 348 aa4.45□□□□□ -1.7
VPS13D-201ENST00000011700 RNASE3P12724 160 aaKnown RBP4.44□□□□□ -1.7
VPS13D-201ENST00000011700 C1orf229Q6ZS94 237 aaPredicted RBP4.44□□□□□ -1.7
VPS13D-201ENST00000011700 XAGE1AQ9HD64 81 aa4.44□□□□□ -1.7
VPS13D-201ENST00000011700 IGKV2-24A0A0C4DH68 120 aa4.44□□□□□ -1.7
VPS13D-201ENST00000011700 H3BNG1 76 aa4.44□□□□□ -1.7
VPS13D-201ENST00000011700 COL4A3Q01955 1670 aa4.44□□□□□ -1.7
VPS13D-201ENST00000011700 CYP4F30PQ9H0H9 118 aa4.44□□□□□ -1.7
VPS13D-201ENST00000011700 STAB2Q8WWQ8 2551 aa4.44□□□□□ -1.7
VPS13D-201ENST00000011700 EDN2P20800 178 aa4.44□□□□□ -1.7
VPS13D-201ENST00000011700 ZNF702PQ9H963 129 aa4.44□□□□□ -1.7
VPS13D-201ENST00000011700 ARTNQ5T4W7 220 aa4.44□□□□□ -1.7
VPS13D-201ENST00000011700 C8orf87E5RJ46 101 aa4.43□□□□□ -1.7
VPS13D-201ENST00000011700 FAM19A5Q7Z5A7 132 aaPredicted RBP4.43□□□□□ -1.7
VPS13D-201ENST00000011700 PLAC8L1A1L4L8 177 aa4.43□□□□□ -1.7
VPS13D-201ENST00000011700 BEAN1Q3B7T3 259 aa4.43□□□□□ -1.7
VPS13D-201ENST00000011700 XGP55808 180 aa4.43□□□□□ -1.7
VPS13D-201ENST00000011700 LINC00694P0DN24 101 aa4.42□□□□□ -1.7
VPS13D-201ENST00000011700 SNURFQ9Y675 71 aa4.42□□□□□ -1.7
VPS13D-201ENST00000011700 H0Y9P7 68 aa4.42□□□□□ -1.7
VPS13D-201ENST00000011700 IGHV4-31P0DP07 118 aa4.42□□□□□ -1.7
VPS13D-201ENST00000011700 LINC01547P58512 204 aaPredicted RBP4.42□□□□□ -1.7
VPS13D-201ENST00000011700 LOC110117498A0A087WWA1 95 aa4.42□□□□□ -1.7
VPS13D-201ENST00000011700 CYSRT1A8MQ03 144 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 SMIM1B2RUZ4 78 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 GDF5OSQ5U4N7 250 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 CHD6Q8TD26 2715 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 IGKV2-28A0A075B6P5 120 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 IGKV2D-28P01615 120 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 SPAG11AQ6PDA7 123 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 Q6ZTC4 211 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 MOBPQ13875 183 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 C11orf71Q6IPW1 123 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 CRIP1P50238 77 aa4.41□□□□□ -1.7
VPS13D-201ENST00000011700 RPL37AP61513 92 aaKnown RBP4.41□□□□□ -1.7
VPS13D-201ENST00000011700 MAPK1IP1LQ8NDC0 245 aa4.4□□□□□ -1.7
VPS13D-201ENST00000011700 LINC00575Q6W349 94 aa4.4□□□□□ -1.7
VPS13D-201ENST00000011700 PLA2G2EQ9NZK7 142 aa4.4□□□□□ -1.7
VPS13D-201ENST00000011700 RETNLBQ9BQ08 111 aa4.4□□□□□ -1.71
VPS13D-201ENST00000011700 TRAV22A0A0B4J277 110 aa4.4□□□□□ -1.71
VPS13D-201ENST00000011700 LINC00242Q5T6M2 205 aa4.4□□□□□ -1.71
VPS13D-201ENST00000011700 BAHCC1Q9P281 2608 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 SERTAD4-AS1Q5TG53 156 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 A0A1B0GU69 56 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 TEX15Q9BXT5 2789 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 LINC00337Q8N6G1 96 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 COL6A5A8TX70 2615 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 ZNF295-AS1Q8N0V1 137 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 LOC100131303A0A0U1RQF7 123 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 FAM229AH3BQW9 127 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 WFDC13Q8IUB5 93 aa4.39□□□□□ -1.71
VPS13D-201ENST00000011700 IGLV1-51P01701 117 aa4.38□□□□□ -1.71
VPS13D-201ENST00000011700 PRM2P04554 102 aa4.38□□□□□ -1.71
VPS13D-201ENST00000011700 LOC101927531A0A1B0GV80 90 aa4.38□□□□□ -1.71
VPS13D-201ENST00000011700 MAPKAPK5-AS1Q8N8E1 139 aa4.38□□□□□ -1.71
VPS13D-201ENST00000011700 TTTY13Q9BZ97 58 aa4.38□□□□□ -1.71
VPS13D-201ENST00000011700 ELOF1P60002 83 aaKnown RBP4.38□□□□□ -1.71
VPS13D-201ENST00000011700 C16orf95Q9H693 158 aa4.38□□□□□ -1.71
VPS13D-201ENST00000011700 Q6ZSV7 163 aa4.38□□□□□ -1.71
VPS13D-201ENST00000011700 CEMP1Q6PRD7 247 aaPredicted RBP4.38□□□□□ -1.71
VPS13D-201ENST00000011700 Q9BRP9 147 aa4.38□□□□□ -1.71
VPS13D-201ENST00000011700 LY6G6DO95868 133 aa4.37□□□□□ -1.71
VPS13D-201ENST00000011700 IGLV5-45A0A087WSX0 123 aa4.37□□□□□ -1.71
VPS13D-201ENST00000011700 C11orf72Q8NBR9 251 aa4.37□□□□□ -1.71
VPS13D-201ENST00000011700 MAP1AP78559 2803 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-201ENST00000011700 PRB4P10163 310 aaPredicted RBP4.37□□□□□ -1.71
VPS13D-201ENST00000011700 TP53TG3Q9ULZ0 132 aa4.37□□□□□ -1.71
VPS13D-201ENST00000011700 A8MZ25 164 aa4.37□□□□□ -1.71
VPS13D-201ENST00000011700 Q8NA96 180 aa4.37□□□□□ -1.71
VPS13D-201ENST00000011700 IGLV5-39A0A0G2JS06 123 aa4.36□□□□□ -1.71
VPS13D-201ENST00000011700 BRWD1-AS2P59051 145 aa4.36□□□□□ -1.71
VPS13D-201ENST00000011700 C1orf64Q8NEQ6 169 aa4.36□□□□□ -1.71
VPS13D-201ENST00000011700 PRB2P02812 416 aaPredicted RBP4.36□□□□□ -1.71
VPS13D-201ENST00000011700 POM121L12Q8N7R1 296 aa4.36□□□□□ -1.71
VPS13D-201ENST00000011700 GRNP28799 593 aaKnown RBP4.36□□□□□ -1.71
VPS13D-201ENST00000011700 SPINK6Q6UWN8 80 aa4.36□□□□□ -1.71
VPS13D-201ENST00000011700 C22orf34Q6ZV56 151 aa4.36□□□□□ -1.71
VPS13D-201ENST00000011700 SLPIP03973 132 aa4.35□□□□□ -1.71
VPS13D-201ENST00000011700 TRBV7-4A0A0J9YYF1 115 aa4.35□□□□□ -1.71
VPS13D-201ENST00000011700 C6orf48Q9UBA6 75 aa4.35□□□□□ -1.71
VPS13D-201ENST00000011700 ITPR2Q14571 2701 aa4.35□□□□□ -1.71
VPS13D-201ENST00000011700 SPRNQ5BIV9 151 aa4.35□□□□□ -1.71
VPS13D-201ENST00000011700 IGLV5-52A0A0A0MRZ9 124 aa4.35□□□□□ -1.71
VPS13D-201ENST00000011700 BBC3Q96PG8 261 aaPredicted RBP4.35□□□□□ -1.71
VPS13D-201ENST00000011700 PRB1P04280 392 aa4.34□□□□□ -1.71
VPS13D-201ENST00000011700 IGLV9-49A0A0B4J1Y8 123 aa4.34□□□□□ -1.71
VPS13D-201ENST00000011700 HRCT1Q6UXD1 115 aa4.34□□□□□ -1.71
VPS13D-201ENST00000011700 PLA2G1BP04054 148 aaKnown RBP4.34□□□□□ -1.71
VPS13D-201ENST00000011700 LINC01556Q5JQF7 62 aa4.34□□□□□ -1.71
VPS13D-201ENST00000011700 C7orf65Q6ZTY9 151 aa4.34□□□□□ -1.71
VPS13D-201ENST00000011700 COL4A2P08572 1712 aa4.34□□□□□ -1.71
VPS13D-201ENST00000011700 IGHV6-1A0A0B4J1U7 121 aa4.34□□□□□ -1.72
VPS13D-201ENST00000011700 FHL3Q13643 280 aa4.34□□□□□ -1.72
VPS13D-201ENST00000011700 SCXQ7RTU7 201 aa4.34□□□□□ -1.72
VPS13D-201ENST00000011700 CIRBP-AS1Q8TBR5 109 aa4.33□□□□□ -1.72
VPS13D-201ENST00000011700 LINC01006Q8NI28 216 aa4.33□□□□□ -1.72
VPS13D-201ENST00000011700 GVQW2A0A096LPI5 108 aaPredicted RBP4.33□□□□□ -1.72
VPS13D-201ENST00000011700 LY6G6CO95867 125 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms