RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 FSIP2Q5CZC0 6907 aa10.04□□□□□ -0.8
CLN3-264ENST00000637985 Q6ZUT4 128 aa10.04□□□□□ -0.8
CLN3-264ENST00000637985 IGLV4-69A0A075B6H9 119 aa10.03□□□□□ -0.8
CLN3-264ENST00000637985 NPYP01303 97 aa10.03□□□□□ -0.8
CLN3-264ENST00000637985 RPL39P62891 51 aaKnown RBP10.03□□□□□ -0.8
CLN3-264ENST00000637985 PNRC1Q12796 327 aaPredicted RBP10.03□□□□□ -0.8
CLN3-264ENST00000637985 ORMDL3Q8N138 153 aa10.03□□□□□ -0.8
CLN3-264ENST00000637985 SPANXA1Q9NS26 97 aa10.03□□□□□ -0.8
CLN3-264ENST00000637985 APOMO95445 188 aa10.02□□□□□ -0.81
CLN3-264ENST00000637985 RAB14P61106 215 aa10.02□□□□□ -0.81
CLN3-264ENST00000637985 MRPS36P82909 103 aaKnown RBP10.02□□□□□ -0.81
CLN3-264ENST00000637985 Q6ZRP5 223 aa10.02□□□□□ -0.81
CLN3-264ENST00000637985 TMEM136Q6ZRR5 245 aa10.01□□□□□ -0.81
CLN3-264ENST00000637985 C5orf38Q86SI9 138 aa10.01□□□□□ -0.81
CLN3-264ENST00000637985 ANAPC16Q96DE5 110 aa10.01□□□□□ -0.81
CLN3-264ENST00000637985 C2orf48Q96LS8 159 aa10.01□□□□□ -0.81
CLN3-264ENST00000637985 LOC107984640A0A0U1RRK4 108 aa10□□□□□ -0.81
CLN3-264ENST00000637985 FAM104AQ969W3 186 aa10□□□□□ -0.81
CLN3-264ENST00000637985 PRELID3AQ96N28 172 aa10□□□□□ -0.81
CLN3-264ENST00000637985 CAMK2N2Q96S95 79 aa10□□□□□ -0.81
CLN3-264ENST00000637985 MT-ND4LP03901 98 aa9.99□□□□□ -0.81
CLN3-264ENST00000637985 RAB5AP20339 215 aa9.99□□□□□ -0.81
CLN3-264ENST00000637985 PTTG1IPP53801 180 aa9.99□□□□□ -0.81
CLN3-264ENST00000637985 OR10D4PQ8NGN7 298 aa9.99□□□□□ -0.81
CLN3-264ENST00000637985 PSORS1C2Q9UIG4 136 aa9.99□□□□□ -0.81
CLN3-264ENST00000637985 LAMTOR2Q9Y2Q5 125 aa9.99□□□□□ -0.81
CLN3-264ENST00000637985 PRSS47A8MTI9 375 aa9.98□□□□□ -0.81
CLN3-264ENST00000637985 IGHV3OR16-9A0A0B4J2B5 98 aa9.97□□□□□ -0.81
CLN3-264ENST00000637985 F8WDY8 70 aa9.97□□□□□ -0.81
CLN3-264ENST00000637985 SPAG11BQ08648 103 aa9.97□□□□□ -0.81
CLN3-264ENST00000637985 GAGE2BQ13066 116 aa9.97□□□□□ -0.81
CLN3-264ENST00000637985 PYGO1Q9Y3Y4 419 aa9.97□□□□□ -0.81
CLN3-264ENST00000637985 IFITM10A6NMD0 228 aa9.96□□□□□ -0.82
CLN3-264ENST00000637985 IFI27P40305 119 aaPredicted RBP9.96□□□□□ -0.82
CLN3-264ENST00000637985 RNF151Q2KHN1 245 aa9.96□□□□□ -0.82
CLN3-264ENST00000637985 OPRPNQ99935 248 aaPredicted RBP9.96□□□□□ -0.82
CLN3-264ENST00000637985 PRR4Q16378 134 aa9.95□□□□□ -0.82
CLN3-264ENST00000637985 MAP1LC3AQ9H492 121 aa9.95□□□□□ -0.82
CLN3-264ENST00000637985 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.94□□□□□ -0.82
CLN3-264ENST00000637985 ORAOV1Q8WV07 137 aa9.94□□□□□ -0.82
CLN3-264ENST00000637985 TGIF2-C20orf24A0A0A6YYL0 155 aa9.93□□□□□ -0.82
CLN3-264ENST00000637985 LOC389332A0A1B0GUA5 103 aa9.93□□□□□ -0.82
CLN3-264ENST00000637985 CLLU1Q5K131 121 aa9.93□□□□□ -0.82
CLN3-264ENST00000637985 Q8N8P6 123 aa9.93□□□□□ -0.82
CLN3-264ENST00000637985 PRR26Q8N8Z3 221 aa9.93□□□□□ -0.82
CLN3-264ENST00000637985 MRPL35Q9NZE8 188 aaKnown RBP9.93□□□□□ -0.82
CLN3-264ENST00000637985 CRCT1Q9UGL9 99 aa9.93□□□□□ -0.82
CLN3-264ENST00000637985 IGLV4-3A0A075B6K6 122 aa9.92□□□□□ -0.82
CLN3-264ENST00000637985 RPL18AQ02543 176 aaKnown RBP9.92□□□□□ -0.82
CLN3-264ENST00000637985 TMEM141Q96I45 108 aa9.92□□□□□ -0.82
CLN3-264ENST00000637985 A0A087WZ39 114 aa9.91□□□□□ -0.82
CLN3-264ENST00000637985 A0A1W2PNN7 141 aa9.91□□□□□ -0.82
CLN3-264ENST00000637985 K7EMI3 77 aa9.91□□□□□ -0.82
CLN3-264ENST00000637985 NDUFA1O15239 70 aa9.91□□□□□ -0.82
CLN3-264ENST00000637985 IMMP2LQ96T52 175 aa9.91□□□□□ -0.82
CLN3-264ENST00000637985 ORMDL2Q53FV1 153 aa9.9□□□□□ -0.82
CLN3-264ENST00000637985 C9orf116Q5BN46 136 aaPredicted RBP9.9□□□□□ -0.82
CLN3-264ENST00000637985 LINC00242Q5T6M2 205 aa9.9□□□□□ -0.82
CLN3-264ENST00000637985 TEX43Q6ZNM6 134 aa9.9□□□□□ -0.82
CLN3-264ENST00000637985 CYSLTR1Q9Y271 337 aa9.9□□□□□ -0.82
CLN3-264ENST00000637985 NPSP0C0P6 89 aa9.89□□□□□ -0.83
CLN3-264ENST00000637985 LCE2DQ5TA82 110 aaPredicted RBP9.89□□□□□ -0.83
CLN3-264ENST00000637985 UQCC3Q6UW78 93 aa9.89□□□□□ -0.83
CLN3-264ENST00000637985 C2orf66Q6UXQ4 117 aa9.89□□□□□ -0.83
CLN3-264ENST00000637985 C2orf88Q9BSF0 95 aa9.89□□□□□ -0.83
CLN3-264ENST00000637985 CTDSP1Q9GZU7 261 aa9.89□□□□□ -0.83
CLN3-264ENST00000637985 TLX1NBP0CAT3 122 aa9.88□□□□□ -0.83
CLN3-264ENST00000637985 Q6ZN92 141 aa9.88□□□□□ -0.83
CLN3-264ENST00000637985 LINC01561Q8N1V8 128 aa9.88□□□□□ -0.83
CLN3-264ENST00000637985 NXT2Q9NPJ8 142 aaKnown RBP9.88□□□□□ -0.83
CLN3-264ENST00000637985 G0S2P27469 103 aa9.87□□□□□ -0.83
CLN3-264ENST00000637985 UBE2D1P51668 147 aa9.87□□□□□ -0.83
CLN3-264ENST00000637985 KIAA0087Q14695 138 aa9.87□□□□□ -0.83
CLN3-264ENST00000637985 C10orf25Q5T742 122 aa9.87□□□□□ -0.83
CLN3-264ENST00000637985 UNQ6190/PRO20217Q6UXQ8 127 aa9.87□□□□□ -0.83
CLN3-264ENST00000637985 AMELXQ99217 191 aa9.87□□□□□ -0.83
CLN3-264ENST00000637985 TRAV9-1A0A075B6T8 112 aa9.86□□□□□ -0.83
CLN3-264ENST00000637985 VCX2Q9H322 139 aa9.86□□□□□ -0.83
CLN3-264ENST00000637985 TMEM218A2RU14 115 aa9.85□□□□□ -0.83
CLN3-264ENST00000637985 ADCYAP1P18509 176 aa9.85□□□□□ -0.83
CLN3-264ENST00000637985 C6orf48Q9UBA6 75 aa9.85□□□□□ -0.83
CLN3-264ENST00000637985 TRBV30A0A0K0K1B3 111 aa9.84□□□□□ -0.83
CLN3-264ENST00000637985 IGIPA6NJ69 53 aa9.84□□□□□ -0.83
CLN3-264ENST00000637985 PAPPA-AS1Q5QFB9 102 aa9.84□□□□□ -0.83
CLN3-264ENST00000637985 LINC00173Q6ZV60 143 aa9.84□□□□□ -0.83
CLN3-264ENST00000637985 FAM19A3Q7Z5A8 133 aa9.84□□□□□ -0.83
CLN3-264ENST00000637985 MT-ND6P03923 174 aa9.83□□□□□ -0.84
CLN3-264ENST00000637985 PHF5AQ7RTV0 110 aaKnown RBP9.83□□□□□ -0.84
CLN3-264ENST00000637985 IFITM2Q01629 132 aa9.82□□□□□ -0.84
CLN3-264ENST00000637985 ZC2HC1BQ5TFG8 222 aa9.82□□□□□ -0.84
CLN3-264ENST00000637985 TIMM17AQ99595 171 aa9.82□□□□□ -0.84
CLN3-264ENST00000637985 SEC11CQ9BY50 192 aa9.82□□□□□ -0.84
CLN3-264ENST00000637985 IGLV1-50A0A075B6I6 118 aa9.81□□□□□ -0.84
CLN3-264ENST00000637985 SEC11AP67812 179 aa9.81□□□□□ -0.84
CLN3-264ENST00000637985 KIAA1644Q3SXP7 199 aa9.81□□□□□ -0.84
CLN3-264ENST00000637985 DIRC1Q969H9 104 aa9.81□□□□□ -0.84
CLN3-264ENST00000637985 PACRGQ96M98 296 aaPredicted RBP9.81□□□□□ -0.84
CLN3-264ENST00000637985 PRSS2P07478 247 aa9.8□□□□□ -0.84
CLN3-264ENST00000637985 S100PP25815 95 aa9.8□□□□□ -0.84
CLN3-264ENST00000637985 HERVK_113P63121 156 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms