RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 CDC42SE2Q9NRR3 84 aa6.55□□□□□ -1.36
PDLIM5-223ENST00000627587 A0A0J9YXV3 536 aa6.54□□□□□ -1.36
PDLIM5-223ENST00000627587 COX8AP10176 69 aa6.54□□□□□ -1.36
PDLIM5-223ENST00000627587 HERVK_113P61574 105 aa6.54□□□□□ -1.36
PDLIM5-223ENST00000627587 TMEM170BQ5T4T1 132 aa6.54□□□□□ -1.36
PDLIM5-223ENST00000627587 VPS13DQ5THJ4 4388 aa6.54□□□□□ -1.36
PDLIM5-223ENST00000627587 A0A1B0GV90 55 aa6.53□□□□□ -1.36
PDLIM5-223ENST00000627587 TMEM262E9PQX1 116 aa6.53□□□□□ -1.36
PDLIM5-223ENST00000627587 TRAV10A0A0B4J240 114 aa6.53□□□□□ -1.36
PDLIM5-223ENST00000627587 TINCRA0A1B0GVN0 87 aa6.53□□□□□ -1.36
PDLIM5-223ENST00000627587 UBE2D1P51668 147 aa6.53□□□□□ -1.36
PDLIM5-223ENST00000627587 HNRNPA3P51991 378 aaKnown RBP6.53□□□□□ -1.36
PDLIM5-223ENST00000627587 LELP1Q5T871 98 aa6.53□□□□□ -1.36
PDLIM5-223ENST00000627587 IGLV4-60A0A075B6I1 120 aa6.52□□□□□ -1.37
PDLIM5-223ENST00000627587 A0A1B0GUV1 79 aa6.52□□□□□ -1.37
PDLIM5-223ENST00000627587 E9PLD3 99 aa6.52□□□□□ -1.37
PDLIM5-223ENST00000627587 ZNF22P17026 224 aaPredicted RBP6.52□□□□□ -1.37
PDLIM5-223ENST00000627587 SEC11AP67812 179 aa6.52□□□□□ -1.37
PDLIM5-223ENST00000627587 GEMIN7Q9H840 131 aaKnown RBP6.52□□□□□ -1.37
PDLIM5-223ENST00000627587 TRAV13-1A0A0B4J241 112 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 MPV17L2Q567V2 206 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 Q8N3U1 123 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 TTTY13Q9BZ97 58 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 TRAV8-6A0A0B4J262 113 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 TIRAPP58753 221 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 RBX1P62877 108 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 HERVK_113P63121 156 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 LYPD5Q6UWN5 251 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 PCP2Q8IVA1 136 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 BOD1L2Q8IYS8 172 aa6.51□□□□□ -1.37
PDLIM5-223ENST00000627587 TMEM223A0PJW6 202 aa6.5□□□□□ -1.37
PDLIM5-223ENST00000627587 DLEU1O43261 78 aa6.5□□□□□ -1.37
PDLIM5-223ENST00000627587 FAM19A3Q7Z5A8 133 aa6.5□□□□□ -1.37
PDLIM5-223ENST00000627587 FRAS1Q86XX4 4008 aa6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 LINC00242Q5T6M2 205 aa6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 C2orf91Q6ZV80 131 aa6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 C15orf53Q8NAA6 179 aa6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 KRTAP9-2Q9BYQ4 174 aa6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 MRPS16Q9Y3D3 137 aaKnown RBP6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 DNAH6Q9C0G6 4158 aa6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 IGKV3OR2-268A0A0C4DH90 116 aa6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 H3BRM9 83 aa6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 COX6A2Q02221 97 aa6.49□□□□□ -1.37
PDLIM5-223ENST00000627587 KMT2AQ03164 3969 aa6.48□□□□□ -1.37
PDLIM5-223ENST00000627587 IGLV5-45A0A087WSX0 123 aa6.48□□□□□ -1.37
PDLIM5-223ENST00000627587 TSPEAR-AS2P59090 65 aa6.48□□□□□ -1.37
PDLIM5-223ENST00000627587 LINC00336Q6ZUF6 198 aa6.48□□□□□ -1.37
PDLIM5-223ENST00000627587 MAPKAPK5-AS1Q8N8E1 139 aa6.48□□□□□ -1.37
PDLIM5-223ENST00000627587 CDKN2A-AS1Q9UH64 79 aa6.48□□□□□ -1.37
PDLIM5-223ENST00000627587 IGHV3-64A0A075B6Q5 118 aa6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 LEPROTO15243 131 aa6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 SIVA1O15304 175 aa6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 ANGP03950 147 aaKnown RBP6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 DNAH17Q9UFH2 4485 aa6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 MYMXA0A1B0GTQ4 84 aa6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 ZNF815PA8K554 130 aa6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 J3QQQ9 107 aa6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 LGALS3P17931 250 aaKnown RBP6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 PLEKHB2Q96CS7 222 aa6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 APLNQ9ULZ1 77 aa6.47□□□□□ -1.37
PDLIM5-223ENST00000627587 IGHV1-58A0A0C4DH39 117 aa6.46□□□□□ -1.38
PDLIM5-223ENST00000627587 LINC00959A0A1B0GUT2 108 aa6.46□□□□□ -1.38
PDLIM5-223ENST00000627587 CCL25O15444 150 aa6.46□□□□□ -1.38
PDLIM5-223ENST00000627587 SPINK8P0C7L1 97 aa6.46□□□□□ -1.38
PDLIM5-223ENST00000627587 SS18Q15532 418 aa6.46□□□□□ -1.38
PDLIM5-223ENST00000627587 ESRGQ1W209 222 aa6.46□□□□□ -1.38
PDLIM5-223ENST00000627587 CLPSL2Q6UWE3 100 aa6.46□□□□□ -1.38
PDLIM5-223ENST00000627587 LINC00269Q8N2A0 174 aa6.46□□□□□ -1.38
PDLIM5-223ENST00000627587 TRAV8-3A0A0A6YYJ7 113 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 KRTAP9-6A0A140TA67 174 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 IGLL5B9A064 214 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 M0R143 59 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 IGHV3-30-3P0DP02 117 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 EREGO14944 169 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 REG3AQ06141 175 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 SCGB1D4Q6XE38 83 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 WFDC10BQ8IUB3 73 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 SNHG12Q9BXW3 62 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 HIGD1BQ9P298 99 aa6.45□□□□□ -1.38
PDLIM5-223ENST00000627587 KIAA1109Q2LD37 5005 aa6.44□□□□□ -1.38
PDLIM5-223ENST00000627587 HECTD4Q9Y4D8 3996 aa6.44□□□□□ -1.38
PDLIM5-223ENST00000627587 IGHV3OR16-9A0A0B4J2B5 98 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 SMIM1B2RUZ4 78 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 IGHV3-30P01768 117 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 IGHV3-33P01772 117 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 IGHV3-30-5P0DP03 117 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 XCL1P47992 114 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 HINT1P49773 126 aaPredicted RBP6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 BATFQ16520 125 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 KLK12Q9UKR0 248 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 IGLV5-39A0A0G2JS06 123 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 CRPP02741 224 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 CCL18P55774 89 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 HSD52Q0P140 79 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 PRR34Q9NV39 138 aa6.43□□□□□ -1.38
PDLIM5-223ENST00000627587 DYNC1H1Q14204 4646 aaKnown RBP6.42□□□□□ -1.38
PDLIM5-223ENST00000627587 A0A087WZ39 114 aa6.42□□□□□ -1.38
PDLIM5-223ENST00000627587 NDUFA12Q9UI09 145 aa6.42□□□□□ -1.38
PDLIM5-223ENST00000627587 PCLOQ9Y6V0 5065 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms