RNA–Protein interactions for RNA: ENST00000626109.1

LINC00538-201, long intergenic non-protein coding RNA 538, humanhuman

BASIC

Gene LINC00538, Length 1,906 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00538-201ENST00000626109 TTTY13Q9BZ97 58 aa8.36□□□□□ -1.07
LINC00538-201ENST00000626109 NHP2Q9NX24 153 aaKnown RBP8.36□□□□□ -1.07
LINC00538-201ENST00000626109 A8MWV9 139 aa8.35□□□□□ -1.07
LINC00538-201ENST00000626109 TMEM258P61165 79 aa8.35□□□□□ -1.07
LINC00538-201ENST00000626109 SNRPD3P62318 126 aaKnown RBP8.35□□□□□ -1.07
LINC00538-201ENST00000626109 TMEM61Q8N0U2 210 aa8.35□□□□□ -1.07
LINC00538-201ENST00000626109 NTN5Q8WTR8 489 aaPredicted RBP8.35□□□□□ -1.07
LINC00538-201ENST00000626109 IGHV3OR16-9A0A0B4J2B5 98 aa8.35□□□□□ -1.07
LINC00538-201ENST00000626109 A0A0J9YXV3 536 aa8.35□□□□□ -1.07
LINC00538-201ENST00000626109 RBMY1FQ15415 496 aaKnown RBP8.35□□□□□ -1.07
LINC00538-201ENST00000626109 DCANP1Q8TF63 244 aa8.35□□□□□ -1.07
LINC00538-201ENST00000626109 HERVK_113P61574 105 aa8.34□□□□□ -1.07
LINC00538-201ENST00000626109 REG3AQ06141 175 aa8.34□□□□□ -1.07
LINC00538-201ENST00000626109 TMEM141Q96I45 108 aa8.34□□□□□ -1.07
LINC00538-201ENST00000626109 CD7P09564 240 aa8.33□□□□□ -1.08
LINC00538-201ENST00000626109 DEFB1P60022 68 aa8.33□□□□□ -1.08
LINC00538-201ENST00000626109 LINC00242Q5T6M2 205 aa8.33□□□□□ -1.08
LINC00538-201ENST00000626109 IMUPQ9GZP8 106 aa8.33□□□□□ -1.08
LINC00538-201ENST00000626109 XCL2Q9UBD3 114 aa8.33□□□□□ -1.08
LINC00538-201ENST00000626109 KIF25-AS1Q9Y6Z4 181 aa8.33□□□□□ -1.08
LINC00538-201ENST00000626109 TRAV2A0A0B4J234 112 aa8.32□□□□□ -1.08
LINC00538-201ENST00000626109 A8MUN3 132 aa8.32□□□□□ -1.08
LINC00538-201ENST00000626109 IGLL5B9A064 214 aa8.32□□□□□ -1.08
LINC00538-201ENST00000626109 DUSP14O95147 198 aaKnown RBP8.32□□□□□ -1.08
LINC00538-201ENST00000626109 TRAV12-3A0A0B4J271 114 aa8.31□□□□□ -1.08
LINC00538-201ENST00000626109 F8W1H4 67 aa8.31□□□□□ -1.08
LINC00538-201ENST00000626109 POLR2KP53803 58 aaKnown RBP8.31□□□□□ -1.08
LINC00538-201ENST00000626109 TIMM17AQ99595 171 aa8.31□□□□□ -1.08
LINC00538-201ENST00000626109 TRBV7-3A0A075B6L6 115 aa8.31□□□□□ -1.08
LINC00538-201ENST00000626109 K7EQG2 157 aa8.31□□□□□ -1.08
LINC00538-201ENST00000626109 K7ERJ3 54 aa8.31□□□□□ -1.08
LINC00538-201ENST00000626109 LINC00315P59091 139 aa8.31□□□□□ -1.08
LINC00538-201ENST00000626109 SUMO4Q6EEV6 95 aa8.31□□□□□ -1.08
LINC00538-201ENST00000626109 ZFP2Q6ZN57 461 aa8.31□□□□□ -1.08
LINC00538-201ENST00000626109 TRBV6-5A0A0K0K1A5 114 aa8.3□□□□□ -1.08
LINC00538-201ENST00000626109 ZNF815PA8K554 130 aa8.3□□□□□ -1.08
LINC00538-201ENST00000626109 LST1O00453 97 aa8.3□□□□□ -1.08
LINC00538-201ENST00000626109 ANK2Q01484 3957 aa8.3□□□□□ -1.08
LINC00538-201ENST00000626109 TRAV13-1A0A0B4J241 112 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 IGHV4-28A0A0C4DH34 117 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 A0A0J9YX75 114 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 TRBV27A0A0K0K1C4 114 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 EGFEM1PQ0D2K5 195 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 IGHV3-16A0A0C4DH30 117 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 SDHAF1A6NFY7 115 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 IGIPA6NJ69 53 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 ZNF688P0C7X2 276 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 FOXI1Q12951 378 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 RRN3P1Q2M238 152 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 AMTNQ6UX39 209 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 LINC00526Q96FQ7 95 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 SPANXDQ9BXN6 97 aa8.29□□□□□ -1.08
LINC00538-201ENST00000626109 VWFP04275 2813 aa8.28□□□□□ -1.08
LINC00538-201ENST00000626109 IGHV1OR15-1A0A075B7D0 117 aa8.28□□□□□ -1.08
LINC00538-201ENST00000626109 TRBV7-6A0A0J9YX20 115 aa8.28□□□□□ -1.08
LINC00538-201ENST00000626109 TMEM262E9PQX1 116 aa8.28□□□□□ -1.08
LINC00538-201ENST00000626109 H3BMG7 143 aa8.28□□□□□ -1.08
LINC00538-201ENST00000626109 UQCRQO14949 82 aa8.28□□□□□ -1.08
LINC00538-201ENST00000626109 CMC4P56277 68 aaPredicted RBP8.28□□□□□ -1.08
LINC00538-201ENST00000626109 RHOHQ15669 191 aa8.28□□□□□ -1.08
LINC00538-201ENST00000626109 LINC00313P59037 77 aa8.27□□□□□ -1.09
LINC00538-201ENST00000626109 ZNF706Q9Y5V0 76 aaPredicted RBP8.27□□□□□ -1.09
LINC00538-201ENST00000626109 C11orf86A6NJI1 115 aa8.27□□□□□ -1.09
LINC00538-201ENST00000626109 PSPHP1O15172 72 aa8.27□□□□□ -1.09
LINC00538-201ENST00000626109 KRTAP10-11P60412 298 aa8.27□□□□□ -1.09
LINC00538-201ENST00000626109 ZNF56Q15929 161 aa8.27□□□□□ -1.09
LINC00538-201ENST00000626109 FAM74A4Q5TZK3 123 aa8.27□□□□□ -1.09
LINC00538-201ENST00000626109 DEFB131AP59861 70 aa8.26□□□□□ -1.09
LINC00538-201ENST00000626109 ODF3L2Q3SX64 289 aa8.26□□□□□ -1.09
LINC00538-201ENST00000626109 ZNF73O43830 326 aaPredicted RBP8.25□□□□□ -1.09
LINC00538-201ENST00000626109 TSHBP01222 138 aa8.25□□□□□ -1.09
LINC00538-201ENST00000626109 KPRPQ5T749 579 aaPredicted RBP8.25□□□□□ -1.09
LINC00538-201ENST00000626109 IGLV4-69A0A075B6H9 119 aa8.25□□□□□ -1.09
LINC00538-201ENST00000626109 IGHV6-1A0A0B4J1U7 121 aa8.25□□□□□ -1.09
LINC00538-201ENST00000626109 M0QY20 66 aa8.25□□□□□ -1.09
LINC00538-201ENST00000626109 IGHV4-30-4P0DP06 118 aa8.25□□□□□ -1.09
LINC00538-201ENST00000626109 ZNF876PQ49A33 203 aa8.25□□□□□ -1.09
LINC00538-201ENST00000626109 TMEM170BQ5T4T1 132 aa8.25□□□□□ -1.09
LINC00538-201ENST00000626109 NOTCH3Q9UM47 2321 aa8.25□□□□□ -1.09
LINC00538-201ENST00000626109 TRRAPQ9Y4A5 3859 aa8.24□□□□□ -1.09
LINC00538-201ENST00000626109 TRAV12-2A0A075B6T6 113 aa8.24□□□□□ -1.09
LINC00538-201ENST00000626109 I3L3M4 83 aa8.24□□□□□ -1.09
LINC00538-201ENST00000626109 COX7A2LO14548 114 aa8.24□□□□□ -1.09
LINC00538-201ENST00000626109 IGKV3-20P01619 116 aa8.24□□□□□ -1.09
LINC00538-201ENST00000626109 RPL39P62891 51 aaKnown RBP8.24□□□□□ -1.09
LINC00538-201ENST00000626109 M0R378 163 aa8.23□□□□□ -1.09
LINC00538-201ENST00000626109 UBE2L6O14933 153 aa8.23□□□□□ -1.09
LINC00538-201ENST00000626109 LGALS3P17931 250 aaKnown RBP8.23□□□□□ -1.09
LINC00538-201ENST00000626109 SPINK13Q1W4C9 94 aa8.23□□□□□ -1.09
LINC00538-201ENST00000626109 MORN3Q6PF18 240 aaPredicted RBP8.23□□□□□ -1.09
LINC00538-201ENST00000626109 IGHV1-58A0A0C4DH39 117 aa8.23□□□□□ -1.09
LINC00538-201ENST00000626109 K7EQD1 137 aa8.23□□□□□ -1.09
LINC00538-201ENST00000626109 LCE2DQ5TA82 110 aaPredicted RBP8.23□□□□□ -1.09
LINC00538-201ENST00000626109 NFE4Q86UQ8 179 aa8.23□□□□□ -1.09
LINC00538-201ENST00000626109 WFDC10AQ9H1F0 79 aa8.23□□□□□ -1.09
LINC00538-201ENST00000626109 SMCPP49901 116 aaPredicted RBP8.22□□□□□ -1.09
LINC00538-201ENST00000626109 UBE2D1P51668 147 aa8.22□□□□□ -1.09
LINC00538-201ENST00000626109 TMEM243Q9BU79 118 aa8.22□□□□□ -1.09
LINC00538-201ENST00000626109 KLK5Q9Y337 293 aaPredicted RBP8.22□□□□□ -1.09
LINC00538-201ENST00000626109 A0A0J9YY99 117 aa8.21□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms