RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 RASL11AQ6T310 242 aa2.17□□□□□ -2.06
CKS1BP3-201ENST00000600888 TEX261Q6UWH6 196 aa2.17□□□□□ -2.06
CKS1BP3-201ENST00000600888 LYZL1Q6UWQ5 148 aa2.17□□□□□ -2.06
CKS1BP3-201ENST00000600888 ENHOQ6UWT2 76 aa2.17□□□□□ -2.06
CKS1BP3-201ENST00000600888 NKAPP1Q8N9T2 125 aa2.17□□□□□ -2.06
CKS1BP3-201ENST00000600888 UBE2WQ96B02 151 aa2.17□□□□□ -2.06
CKS1BP3-201ENST00000600888 DPH3P1Q9H4G8 78 aa2.17□□□□□ -2.06
CKS1BP3-201ENST00000600888 NIT2Q9NQR4 276 aa2.17□□□□□ -2.06
CKS1BP3-201ENST00000600888 FAT1Q14517 4588 aa2.17□□□□□ -2.06
CKS1BP3-201ENST00000600888 IGKV2D-24A0A075B6R9 120 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 TRAV8-4A0A0B4J246 113 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 IGHV1-24A0A0C4DH33 117 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 MUC21A0A0G2JKD1 596 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 MUC21A0A140T8X8 626 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 A8MWL6 223 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 TMEM262E9PQX1 116 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 KRTAP4-16G5E9R7 235 aaPredicted RBP2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 K7EN84 100 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 NCR2O95944 276 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 CRPP02741 224 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 FUSP35637 526 aaKnown RBP eCLIP2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 RBX1P62877 108 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 MPV17L2Q567V2 206 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 ALKAL2Q6UX46 152 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 KRTAP5-5Q701N2 237 aaPredicted RBP2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 BAALCQ8WXS3 180 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 HIST1H4GQ99525 98 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 KRTAP4-3Q9BYR4 195 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 VCX2Q9H322 139 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 SMDT1Q9H4I9 107 aa2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 RPP21Q9H633 154 aaKnown RBP2.16□□□□□ -2.06
CKS1BP3-201ENST00000600888 TRBV6-5A0A0K0K1A5 114 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 GATCO43716 136 aaKnown RBP2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 ANGP03950 147 aaKnown RBP2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 MGPP08493 103 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 SRP19P09132 144 aaKnown RBP2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 INAFM2P0DMQ5 153 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 NKX2-5P52952 324 aaPredicted RBP2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 COTL1Q14019 142 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 Q5VSD8 79 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 SMIM15Q7Z3B0 74 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 LINC01551Q86U37 167 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 C9orf163Q8N9P6 203 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 GATD1Q8NB37 220 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 TSKUQ8WUA8 353 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 RNF185Q96GF1 192 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 SMIM7Q9BQ49 75 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 TMEM243Q9BU79 118 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 RNASE7Q9H1E1 156 aaKnown RBP2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 OSTCQ9NRP0 149 aa2.15□□□□□ -2.07
CKS1BP3-201ENST00000600888 DNAH8Q96JB1 4490 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 IGLV4-60A0A075B6I1 120 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 A0A1B0GUT8 65 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 ZNF727A8MUV8 499 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 LECT2O14960 151 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 SMR3BP02814 79 aaPredicted RBP2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 ESDP10768 282 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 ZNF25P17030 456 aaPredicted RBP2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 POLR2KP53803 58 aaKnown RBP2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 CNBPP62633 177 aaKnown RBP2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 REG3AQ06141 175 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 CIRBPQ14011 172 aaKnown RBP2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 LINC00269Q8N2A0 174 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 CIRBP-AS1Q8TBR5 109 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 ISOC2Q96AB3 205 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 BORCS7Q96B45 105 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 CHAC1Q9BUX1 264 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 LCE3DQ9BYE3 92 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 EIF5A2Q9GZV4 153 aaKnown RBP2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 TMEM191AQ9H0A3 160 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 V9GYV3 84 aa2.14□□□□□ -2.07
CKS1BP3-201ENST00000600888 MYCBP2O75592 4640 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 TRBV24-1A0A075B6N3 115 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 TRBV27A0A0K0K1C4 114 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 A0A1B0GVG6 124 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 A0A1B0GW15 77 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 SMIM27A0A1W2PRY6 76 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 LINC00862A6NCI5 91 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 SDHAF1A6NFY7 115 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 HIGD1CA8MV81 97 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 I3L3M4 83 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 UBE2L6O14933 153 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 PPP1R17O96001 155 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 HLA-DQA1P01909 254 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 CHTF8P0CG12 524 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 RAB4AP20338 218 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 KRTAP10-4P60372 401 aaPredicted RBP2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 RPL23P62829 140 aaKnown RBP2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 PEA15Q15121 130 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 TMEM241Q24JQ0 296 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 SDIM1Q6ZPB5 146 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 SCXQ7RTU7 201 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 MRPL52Q86TS9 123 aaKnown RBP2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 RPL39LQ96EH5 51 aaKnown RBP2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 MRAP2Q96G30 205 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 NAT8BQ9UHF3 227 aa2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 CSDC2Q9Y534 153 aaKnown RBP2.13□□□□□ -2.07
CKS1BP3-201ENST00000600888 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.12□□□□□ -2.07
CKS1BP3-201ENST00000600888 TRAV26-2A0A0B4J265 109 aa2.12□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms