RNA–Protein interactions for RNA: ENST00000599144.5

IRF3-222, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,117 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-222	ENST00000599144		H0Y9J4	135 aa		11.58	□□□□□ -0.56
IRF3-222	ENST00000599144	SUMO2	P61956	95 aa	Known RBP	11.58	□□□□□ -0.56
IRF3-222	ENST00000599144	CSDC2	Q9Y534	153 aa	Known RBP	11.58	□□□□□ -0.56
IRF3-222	ENST00000599144	RPL39	P62891	51 aa	Known RBP	11.57	□□□□□ -0.56
IRF3-222	ENST00000599144	GAGE2E	Q4V326	116 aa		11.57	□□□□□ -0.56
IRF3-222	ENST00000599144	UNQ6190/PRO20217	Q6UXQ8	127 aa		11.57	□□□□□ -0.56
IRF3-222	ENST00000599144	KRTAP7-1	Q8IUC3	87 aa		11.57	□□□□□ -0.56
IRF3-222	ENST00000599144	FAM104A	Q969W3	186 aa		11.57	□□□□□ -0.56
IRF3-222	ENST00000599144	SEC11C	Q9BY50	192 aa		11.57	□□□□□ -0.56
IRF3-222	ENST00000599144	GAGE2D	Q9UEU5	116 aa		11.57	□□□□□ -0.56
IRF3-222	ENST00000599144	KRTAP1-4	P0C5Y4	121 aa		11.56	□□□□□ -0.56
IRF3-222	ENST00000599144	PRR4	Q16378	134 aa		11.56	□□□□□ -0.56
IRF3-222	ENST00000599144	RNF151	Q2KHN1	245 aa		11.56	□□□□□ -0.56
IRF3-222	ENST00000599144	C6orf48	Q9UBA6	75 aa		11.56	□□□□□ -0.56
IRF3-222	ENST00000599144	MUC2	Q02817	5179 aa		11.56	□□□□□ -0.56
IRF3-222	ENST00000599144	NDUFA5	Q16718	116 aa		11.55	□□□□□ -0.56
IRF3-222	ENST00000599144	KIR2DL4	Q99706	377 aa		11.55	□□□□□ -0.56
IRF3-222	ENST00000599144	MRPL35	Q9NZE8	188 aa	Known RBP	11.55	□□□□□ -0.56
IRF3-222	ENST00000599144	MRPL51	Q4U2R6	128 aa	Known RBP	11.54	□□□□□ -0.56
IRF3-222	ENST00000599144	OR10D4P	Q8NGN7	298 aa		11.54	□□□□□ -0.56
IRF3-222	ENST00000599144	NDUFA1	O15239	70 aa		11.53	□□□□□ -0.56
IRF3-222	ENST00000599144	ADCYAP1	P18509	176 aa		11.53	□□□□□ -0.56
IRF3-222	ENST00000599144	RIG	Q13278	110 aa		11.53	□□□□□ -0.56
IRF3-222	ENST00000599144		V9GYV3	84 aa		11.53	□□□□□ -0.56
IRF3-222	ENST00000599144	IGHV3OR16-9	A0A0B4J2B5	98 aa		11.52	□□□□□ -0.57
IRF3-222	ENST00000599144	PPP1R2P9	O14990	202 aa		11.52	□□□□□ -0.57
IRF3-222	ENST00000599144	MT-ND4L	P03901	98 aa		11.52	□□□□□ -0.57
IRF3-222	ENST00000599144	SMAGP	Q0VAQ4	97 aa		11.52	□□□□□ -0.57
IRF3-222	ENST00000599144	IMMP2L	Q96T52	175 aa		11.52	□□□□□ -0.57
IRF3-222	ENST00000599144	TIMM21	Q9BVV7	248 aa		11.52	□□□□□ -0.57
IRF3-222	ENST00000599144	IGLV1-50	A0A075B6I6	118 aa		11.51	□□□□□ -0.57
IRF3-222	ENST00000599144	C10orf91	Q5T1B1	145 aa		11.51	□□□□□ -0.57
IRF3-222	ENST00000599144	CARHSP1	Q9Y2V2	147 aa	Known RBP	11.51	□□□□□ -0.57
IRF3-222	ENST00000599144		M0QXV9	152 aa		11.5	□□□□□ -0.57
IRF3-222	ENST00000599144	UBE2B	P63146	152 aa		11.5	□□□□□ -0.57
IRF3-222	ENST00000599144	FAM104B	Q5XKR9	115 aa		11.5	□□□□□ -0.57
IRF3-222	ENST00000599144	IFITM10	A6NMD0	228 aa		11.49	□□□□□ -0.57
IRF3-222	ENST00000599144	UBE2D1	P51668	147 aa		11.49	□□□□□ -0.57
IRF3-222	ENST00000599144	SLC7A5P1	Q8MH63	180 aa		11.49	□□□□□ -0.57
IRF3-222	ENST00000599144	TMEM18	Q96B42	140 aa		11.49	□□□□□ -0.57
IRF3-222	ENST00000599144	ANAPC16	Q96DE5	110 aa		11.49	□□□□□ -0.57
IRF3-222	ENST00000599144	PPP1R17	O96001	155 aa		11.48	□□□□□ -0.57
IRF3-222	ENST00000599144	TLX1NB	P0CAT3	122 aa		11.48	□□□□□ -0.57
IRF3-222	ENST00000599144	TCAP	O15273	167 aa		11.47	□□□□□ -0.57
IRF3-222	ENST00000599144	KIAA0087	Q14695	138 aa		11.47	□□□□□ -0.57
IRF3-222	ENST00000599144	C2orf82	Q6UX34	121 aa		11.47	□□□□□ -0.57
IRF3-222	ENST00000599144	NAT8B	Q9UHF3	227 aa		11.47	□□□□□ -0.57
IRF3-222	ENST00000599144	SMIM27	A0A1W2PRY6	76 aa		11.46	□□□□□ -0.57
IRF3-222	ENST00000599144	TNFRSF6B	O95407	300 aa		11.46	□□□□□ -0.57
IRF3-222	ENST00000599144	APOC3	P02656	99 aa		11.46	□□□□□ -0.57
IRF3-222	ENST00000599144	CKS2	P33552	79 aa		11.46	□□□□□ -0.57
IRF3-222	ENST00000599144	C9orf129	Q5T035	196 aa	Known RBP	11.46	□□□□□ -0.57
IRF3-222	ENST00000599144	CTDSP1	Q9GZU7	261 aa		11.46	□□□□□ -0.57
IRF3-222	ENST00000599144	TSPAN13	O95857	204 aa		11.45	□□□□□ -0.58
IRF3-222	ENST00000599144	HBB	P68871	147 aa		11.45	□□□□□ -0.58
IRF3-222	ENST00000599144	SVBP	Q8N300	66 aa		11.45	□□□□□ -0.58
IRF3-222	ENST00000599144	C20orf78	Q9BR46	151 aa		11.45	□□□□□ -0.58
IRF3-222	ENST00000599144	SMIM2	Q9BVW6	85 aa		11.45	□□□□□ -0.58
IRF3-222	ENST00000599144	KRTAP9-2	Q9BYQ4	174 aa		11.45	□□□□□ -0.58
IRF3-222	ENST00000599144	SPANXA1	Q9NS26	97 aa		11.45	□□□□□ -0.58
IRF3-222	ENST00000599144		F8WDY8	70 aa		11.44	□□□□□ -0.58
IRF3-222	ENST00000599144	NPY	P01303	97 aa		11.44	□□□□□ -0.58
IRF3-222	ENST00000599144	RHEB	Q15382	184 aa		11.44	□□□□□ -0.58
IRF3-222	ENST00000599144	TRBV24-1	A0A075B6N3	115 aa		11.43	□□□□□ -0.58
IRF3-222	ENST00000599144		D6R8Y8	96 aa		11.43	□□□□□ -0.58
IRF3-222	ENST00000599144	SNAPIN	O95295	136 aa		11.43	□□□□□ -0.58
IRF3-222	ENST00000599144	MRPS36	P82909	103 aa	Known RBP	11.43	□□□□□ -0.58
IRF3-222	ENST00000599144	TGIF2-C20orf24	A0A0A6YYL0	155 aa		11.41	□□□□□ -0.58
IRF3-222	ENST00000599144	RPL32	P62910	135 aa	Known RBP	11.41	□□□□□ -0.58
IRF3-222	ENST00000599144	LINC00242	Q5T6M2	205 aa		11.41	□□□□□ -0.58
IRF3-222	ENST00000599144	ZC2HC1B	Q5TFG8	222 aa		11.41	□□□□□ -0.58
IRF3-222	ENST00000599144	MRPL54	Q6P161	138 aa	Known RBP	11.41	□□□□□ -0.58
IRF3-222	ENST00000599144	RPS10P5	Q9NQ39	176 aa		11.41	□□□□□ -0.58
IRF3-222	ENST00000599144		A0A1B0GW15	77 aa		11.4	□□□□□ -0.58
IRF3-222	ENST00000599144	LINC00469	Q8N7U9	141 aa		11.4	□□□□□ -0.58
IRF3-222	ENST00000599144	NDUFC2-KCTD14	E9PQ53	114 aa		11.39	□□□□□ -0.59
IRF3-222	ENST00000599144	S100A8	P05109	93 aa		11.39	□□□□□ -0.59
IRF3-222	ENST00000599144	RPL13A	P40429	203 aa	Known RBP	11.39	□□□□□ -0.59
IRF3-222	ENST00000599144	IGLV4-3	A0A075B6K6	122 aa		11.38	□□□□□ -0.59
IRF3-222	ENST00000599144	S100P	P25815	95 aa		11.38	□□□□□ -0.59
IRF3-222	ENST00000599144	FAT4	Q6V0I7	4981 aa		11.37	□□□□□ -0.59
IRF3-222	ENST00000599144	TRBV30	A0A0K0K1B3	111 aa		11.37	□□□□□ -0.59
IRF3-222	ENST00000599144	ZNF861P	O60384	105 aa		11.37	□□□□□ -0.59
IRF3-222	ENST00000599144	ATP5L2	Q7Z4Y8	100 aa		11.37	□□□□□ -0.59
IRF3-222	ENST00000599144	PACRG	Q96M98	296 aa	Predicted RBP	11.37	□□□□□ -0.59
IRF3-222	ENST00000599144	IFI27	P40305	119 aa	Predicted RBP	11.36	□□□□□ -0.59
IRF3-222	ENST00000599144	XAGE1A	Q9HD64	81 aa		11.36	□□□□□ -0.59
IRF3-222	ENST00000599144	TRAV9-1	A0A075B6T8	112 aa		11.35	□□□□□ -0.59
IRF3-222	ENST00000599144		A0A087X002	238 aa		11.35	□□□□□ -0.59
IRF3-222	ENST00000599144	TOMM7	Q9P0U1	55 aa		11.35	□□□□□ -0.59
IRF3-222	ENST00000599144	C22orf24	Q9Y442	160 aa		11.35	□□□□□ -0.59
IRF3-222	ENST00000599144		A0A1B0GXF2	115 aa		11.33	□□□□□ -0.6
IRF3-222	ENST00000599144	ANAPC11	Q9NYG5	84 aa		11.33	□□□□□ -0.6
IRF3-222	ENST00000599144		A0A0U1RQV1	116 aa		11.32	□□□□□ -0.6
IRF3-222	ENST00000599144	RAB5A	P20339	215 aa		11.32	□□□□□ -0.6
IRF3-222	ENST00000599144	TMEM141	Q96I45	108 aa		11.32	□□□□□ -0.6
IRF3-222	ENST00000599144	LOC389332	A0A1B0GUA5	103 aa		11.31	□□□□□ -0.6
IRF3-222	ENST00000599144	LCE2A	Q5TA79	106 aa	Predicted RBP	11.3	□□□□□ -0.6
IRF3-222	ENST00000599144	TEX43	Q6ZNM6	134 aa		11.3	□□□□□ -0.6
IRF3-222	ENST00000599144	TMEM136	Q6ZRR5	245 aa		11.3	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms