RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 CSDC2Q9Y534 153 aaKnown RBP10.54□□□□□ -0.72
SHKBP1-215ENST00000597649 LINC01549A6NIU2 74 aa10.53□□□□□ -0.72
SHKBP1-215ENST00000597649 C9orf163Q8N9P6 203 aa10.53□□□□□ -0.72
SHKBP1-215ENST00000597649 CHCHD1Q96BP2 118 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-215ENST00000597649 CDC42SE2Q9NRR3 84 aa10.53□□□□□ -0.72
SHKBP1-215ENST00000597649 C1orf196B1AJZ1 125 aa10.52□□□□□ -0.73
SHKBP1-215ENST00000597649 MIAQ16674 131 aa10.52□□□□□ -0.73
SHKBP1-215ENST00000597649 SDIM1Q6ZPB5 146 aa10.52□□□□□ -0.73
SHKBP1-215ENST00000597649 TOMM6Q96B49 74 aa10.52□□□□□ -0.73
SHKBP1-215ENST00000597649 PRR34Q9NV39 138 aa10.52□□□□□ -0.73
SHKBP1-215ENST00000597649 Q6ZRU5 148 aa10.51□□□□□ -0.73
SHKBP1-215ENST00000597649 URB1-AS1Q96HZ7 61 aa10.51□□□□□ -0.73
SHKBP1-215ENST00000597649 SCGB3A1Q96QR1 104 aa10.51□□□□□ -0.73
SHKBP1-215ENST00000597649 PYGO1Q9Y3Y4 419 aa10.51□□□□□ -0.73
SHKBP1-215ENST00000597649 TRAV8-4A0A0B4J246 113 aa10.5□□□□□ -0.73
SHKBP1-215ENST00000597649 HSBP1O75506 76 aa10.5□□□□□ -0.73
SHKBP1-215ENST00000597649 KRTAP26-1Q6PEX3 210 aa10.5□□□□□ -0.73
SHKBP1-215ENST00000597649 Q6ZN92 141 aa10.5□□□□□ -0.73
SHKBP1-215ENST00000597649 Q6ZUT4 128 aa10.5□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST1H2BKO60814 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HBDP02042 147 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST1H2BJP06899 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST1H2BOP23527 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST1H2BBP33778 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST1H2BDP58876 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST1H2BCP62807 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 MRPS36P82909 103 aaKnown RBP10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 PMCHL1Q16048 86 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST2H2BEQ16778 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 RNASE13Q5GAN3 156 aaKnown RBP10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 PAPPA-AS1Q5QFB9 102 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST1H2BHQ93079 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST1H2BNQ99877 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 HIST1H2BMQ99879 126 aa10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 OPRPNQ99935 248 aaPredicted RBP10.49□□□□□ -0.73
SHKBP1-215ENST00000597649 IGLV10-54A0A075B6I4 117 aa10.48□□□□□ -0.73
SHKBP1-215ENST00000597649 SERF1AO75920 110 aa10.48□□□□□ -0.73
SHKBP1-215ENST00000597649 SS18Q15532 418 aa10.48□□□□□ -0.73
SHKBP1-215ENST00000597649 ERASQ7Z444 233 aa10.48□□□□□ -0.73
SHKBP1-215ENST00000597649 TMEM141Q96I45 108 aa10.48□□□□□ -0.73
SHKBP1-215ENST00000597649 VCX2Q9H322 139 aa10.48□□□□□ -0.73
SHKBP1-215ENST00000597649 IGLV4-3A0A075B6K6 122 aa10.47□□□□□ -0.73
SHKBP1-215ENST00000597649 IGIPA6NJ69 53 aa10.47□□□□□ -0.73
SHKBP1-215ENST00000597649 NPSP0C0P6 89 aa10.47□□□□□ -0.73
SHKBP1-215ENST00000597649 TEX43Q6ZNM6 134 aa10.47□□□□□ -0.73
SHKBP1-215ENST00000597649 TIMM17AQ99595 171 aa10.47□□□□□ -0.73
SHKBP1-215ENST00000597649 TRAV13-1A0A0B4J241 112 aa10.46□□□□□ -0.73
SHKBP1-215ENST00000597649 LINC00959A0A1B0GUT2 108 aa10.46□□□□□ -0.73
SHKBP1-215ENST00000597649 IFITM10A6NMD0 228 aa10.46□□□□□ -0.73
SHKBP1-215ENST00000597649 CIRBPQ14011 172 aaKnown RBP10.46□□□□□ -0.73
SHKBP1-215ENST00000597649 C2orf88Q9BSF0 95 aa10.46□□□□□ -0.73
SHKBP1-215ENST00000597649 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP10.45□□□□□ -0.74
SHKBP1-215ENST00000597649 CCL25O15444 150 aa10.45□□□□□ -0.74
SHKBP1-215ENST00000597649 ODF1Q14990 250 aa10.45□□□□□ -0.74
SHKBP1-215ENST00000597649 A0A096LNJ9 63 aa10.44□□□□□ -0.74
SHKBP1-215ENST00000597649 ATP5LO75964 103 aa10.44□□□□□ -0.74
SHKBP1-215ENST00000597649 NDUFA6P56556 154 aa10.44□□□□□ -0.74
SHKBP1-215ENST00000597649 FAM19A2Q8N3H0 131 aa10.44□□□□□ -0.74
SHKBP1-215ENST00000597649 CHCHD10Q8WYQ3 142 aaPredicted RBP10.44□□□□□ -0.74
SHKBP1-215ENST00000597649 GAGE12HA6NDE8 117 aa10.43□□□□□ -0.74
SHKBP1-215ENST00000597649 XCL1P47992 114 aa10.43□□□□□ -0.74
SHKBP1-215ENST00000597649 PDZD11Q5EBL8 140 aa10.43□□□□□ -0.74
SHKBP1-215ENST00000597649 FAM104AQ969W3 186 aa10.43□□□□□ -0.74
SHKBP1-215ENST00000597649 SLPIP03973 132 aa10.42□□□□□ -0.74
SHKBP1-215ENST00000597649 LINC00310P59036 64 aa10.42□□□□□ -0.74
SHKBP1-215ENST00000597649 A0A087WYN8 130 aa10.41□□□□□ -0.74
SHKBP1-215ENST00000597649 NUPR1O60356 82 aa10.41□□□□□ -0.74
SHKBP1-215ENST00000597649 CHTF8P0CG12 524 aa10.41□□□□□ -0.74
SHKBP1-215ENST00000597649 ZC2HC1BQ5TFG8 222 aa10.41□□□□□ -0.74
SHKBP1-215ENST00000597649 AMELXQ99217 191 aa10.41□□□□□ -0.74
SHKBP1-215ENST00000597649 CNBPP62633 177 aaKnown RBP10.4□□□□□ -0.74
SHKBP1-215ENST00000597649 PMVKQ15126 192 aa10.4□□□□□ -0.74
SHKBP1-215ENST00000597649 CD164L2Q6UWJ8 174 aa10.4□□□□□ -0.74
SHKBP1-215ENST00000597649 LEPROTL1O95214 131 aa10.39□□□□□ -0.75
SHKBP1-215ENST00000597649 LINC00173Q6ZV60 143 aa10.39□□□□□ -0.75
SHKBP1-215ENST00000597649 IFI27L1Q96BM0 104 aa10.39□□□□□ -0.75
SHKBP1-215ENST00000597649 FABP4P15090 132 aa10.38□□□□□ -0.75
SHKBP1-215ENST00000597649 UBE2D1P51668 147 aa10.38□□□□□ -0.75
SHKBP1-215ENST00000597649 SEC11AP67812 179 aa10.38□□□□□ -0.75
SHKBP1-215ENST00000597649 DPH3Q96FX2 82 aa10.38□□□□□ -0.75
SHKBP1-215ENST00000597649 CST9LQ9H4G1 147 aa10.38□□□□□ -0.75
SHKBP1-215ENST00000597649 HSPB8Q9UJY1 196 aa10.38□□□□□ -0.75
SHKBP1-215ENST00000597649 hDV102S1A0JD36 115 aa10.37□□□□□ -0.75
SHKBP1-215ENST00000597649 S100A6P06703 90 aa10.37□□□□□ -0.75
SHKBP1-215ENST00000597649 FOXI1Q12951 378 aa10.37□□□□□ -0.75
SHKBP1-215ENST00000597649 COA6Q5JTJ3 125 aaKnown RBP10.37□□□□□ -0.75
SHKBP1-215ENST00000597649 CFAP161Q6P656 301 aa10.37□□□□□ -0.75
SHKBP1-215ENST00000597649 SPACA4Q8TDM5 124 aa10.37□□□□□ -0.75
SHKBP1-215ENST00000597649 IGHV3-64A0A075B6Q5 118 aa10.36□□□□□ -0.75
SHKBP1-215ENST00000597649 COX7A2LO14548 114 aa10.36□□□□□ -0.75
SHKBP1-215ENST00000597649 MALP21145 153 aa10.36□□□□□ -0.75
SHKBP1-215ENST00000597649 LINC00242Q5T6M2 205 aa10.36□□□□□ -0.75
SHKBP1-215ENST00000597649 LINC01600Q96MT4 127 aa10.36□□□□□ -0.75
SHKBP1-215ENST00000597649 GEMIN7Q9H840 131 aaKnown RBP10.36□□□□□ -0.75
SHKBP1-215ENST00000597649 PLAC8Q9NZF1 115 aa10.36□□□□□ -0.75
SHKBP1-215ENST00000597649 C5orf38Q86SI9 138 aa10.35□□□□□ -0.75
SHKBP1-215ENST00000597649 LPAP08519 4548 aa10.35□□□□□ -0.75
SHKBP1-215ENST00000597649 A0A0J9YXV3 536 aa10.34□□□□□ -0.75
SHKBP1-215ENST00000597649 HERVK_113P63121 156 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 73.8 ms