RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 LINC01620Q4KN68 170 aa16.67■□□□□ 0.26
TRIM28-204ENST00000594806 LINC00242Q5T6M2 205 aa16.67■□□□□ 0.26
TRIM28-204ENST00000594806 C5orf38Q86SI9 138 aa16.67■□□□□ 0.26
TRIM28-204ENST00000594806 COLCA2A8K830 154 aa16.66■□□□□ 0.26
TRIM28-204ENST00000594806 SLPIP03973 132 aa16.66■□□□□ 0.26
TRIM28-204ENST00000594806 SEC11AP67812 179 aa16.66■□□□□ 0.26
TRIM28-204ENST00000594806 FAM19A3Q7Z5A8 133 aa16.66■□□□□ 0.26
TRIM28-204ENST00000594806 URB1-AS1Q96HZ7 61 aa16.66■□□□□ 0.26
TRIM28-204ENST00000594806 FAM30AQ9NZY2 134 aa16.65■□□□□ 0.26
TRIM28-204ENST00000594806 IGHV3-64A0A075B6Q5 118 aa16.64■□□□□ 0.25
TRIM28-204ENST00000594806 TRGC2P03986 189 aa16.64■□□□□ 0.25
TRIM28-204ENST00000594806 APOBP04114 4563 aaKnown RBP16.63■□□□□ 0.25
TRIM28-204ENST00000594806 HBDP02042 147 aa16.63■□□□□ 0.25
TRIM28-204ENST00000594806 LINC01561Q8N1V8 128 aa16.63■□□□□ 0.25
TRIM28-204ENST00000594806 OR10D4PQ8NGN7 298 aa16.63■□□□□ 0.25
TRIM28-204ENST00000594806 CHCHD1Q96BP2 118 aaKnown RBP16.63■□□□□ 0.25
TRIM28-204ENST00000594806 A0A087WZ39 114 aa16.62■□□□□ 0.25
TRIM28-204ENST00000594806 RYR1P21817 5038 aa16.62■□□□□ 0.25
TRIM28-204ENST00000594806 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP16.61■□□□□ 0.25
TRIM28-204ENST00000594806 ZC2HC1BQ5TFG8 222 aa16.61■□□□□ 0.25
TRIM28-204ENST00000594806 SDIM1Q6ZPB5 146 aa16.61■□□□□ 0.25
TRIM28-204ENST00000594806 PKIGQ9Y2B9 76 aa16.61■□□□□ 0.25
TRIM28-204ENST00000594806 A0A096LNJ9 63 aa16.6■□□□□ 0.25
TRIM28-204ENST00000594806 HERVK_113P63121 156 aa16.6■□□□□ 0.25
TRIM28-204ENST00000594806 C2orf48Q96LS8 159 aa16.6■□□□□ 0.25
TRIM28-204ENST00000594806 F8WDY8 70 aa16.59■□□□□ 0.25
TRIM28-204ENST00000594806 COX6A2Q02221 97 aa16.59■□□□□ 0.25
TRIM28-204ENST00000594806 HERC2O95714 4834 aa16.59■□□□□ 0.25
TRIM28-204ENST00000594806 HSPG2P98160 4391 aa16.59■□□□□ 0.25
TRIM28-204ENST00000594806 SYCNQ0VAF6 134 aa16.58■□□□□ 0.24
TRIM28-204ENST00000594806 PMVKQ15126 192 aa16.58■□□□□ 0.24
TRIM28-204ENST00000594806 Q8N1X5 172 aa16.58■□□□□ 0.24
TRIM28-204ENST00000594806 CARD19Q96LW7 228 aa16.58■□□□□ 0.24
TRIM28-204ENST00000594806 IGLV4-69A0A075B6H9 119 aa16.57■□□□□ 0.24
TRIM28-204ENST00000594806 SPAG11BQ08648 103 aa16.57■□□□□ 0.24
TRIM28-204ENST00000594806 ORAOV1Q8WV07 137 aa16.57■□□□□ 0.24
TRIM28-204ENST00000594806 CHAC1Q9BUX1 264 aa16.57■□□□□ 0.24
TRIM28-204ENST00000594806 CST9LQ9H4G1 147 aa16.57■□□□□ 0.24
TRIM28-204ENST00000594806 DNAH8Q96JB1 4490 aa16.56■□□□□ 0.24
TRIM28-204ENST00000594806 ATP5LO75964 103 aa16.56■□□□□ 0.24
TRIM28-204ENST00000594806 PDZD11Q5EBL8 140 aa16.56■□□□□ 0.24
TRIM28-204ENST00000594806 BAGE3Q86Y29 109 aa16.56■□□□□ 0.24
TRIM28-204ENST00000594806 LINC00526Q96FQ7 95 aa16.56■□□□□ 0.24
TRIM28-204ENST00000594806 GEMIN7Q9H840 131 aaKnown RBP16.56■□□□□ 0.24
TRIM28-204ENST00000594806 TINCRA0A1B0GVN0 87 aa16.54■□□□□ 0.24
TRIM28-204ENST00000594806 SCO1O75880 301 aa16.54■□□□□ 0.24
TRIM28-204ENST00000594806 CAMK2N2Q96S95 79 aa16.54■□□□□ 0.24
TRIM28-204ENST00000594806 PMCHL1Q16048 86 aa16.53■□□□□ 0.24
TRIM28-204ENST00000594806 SCXQ7RTU7 201 aa16.52■□□□□ 0.24
TRIM28-204ENST00000594806 A0A0J9YXV3 536 aa16.51■□□□□ 0.23
TRIM28-204ENST00000594806 HSBP1O75506 76 aa16.51■□□□□ 0.23
TRIM28-204ENST00000594806 CIRBPQ14011 172 aaKnown RBP16.51■□□□□ 0.23
TRIM28-204ENST00000594806 RNF151Q2KHN1 245 aa16.5■□□□□ 0.23
TRIM28-204ENST00000594806 S100A1P23297 94 aa16.49■□□□□ 0.23
TRIM28-204ENST00000594806 HAMPP81172 84 aa16.49■□□□□ 0.23
TRIM28-204ENST00000594806 Q6ZRU5 148 aa16.49■□□□□ 0.23
TRIM28-204ENST00000594806 CIRBP-AS1Q8TBR5 109 aa16.49■□□□□ 0.23
TRIM28-204ENST00000594806 CDKN2A-AS1Q9UH64 79 aa16.49■□□□□ 0.23
TRIM28-204ENST00000594806 IGLV5-45A0A087WSX0 123 aa16.48■□□□□ 0.23
TRIM28-204ENST00000594806 NDUFA1O15239 70 aa16.48■□□□□ 0.23
TRIM28-204ENST00000594806 PACRGQ96M98 296 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-204ENST00000594806 MRPL35Q9NZE8 188 aaKnown RBP16.48■□□□□ 0.23
TRIM28-204ENST00000594806 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP16.48■□□□□ 0.23
TRIM28-204ENST00000594806 KIAA0087Q14695 138 aa16.47■□□□□ 0.23
TRIM28-204ENST00000594806 LINC00469Q8N7U9 141 aa16.47■□□□□ 0.23
TRIM28-204ENST00000594806 LINC00474Q9P2X8 69 aa16.47■□□□□ 0.23
TRIM28-204ENST00000594806 NDUFA6P56556 154 aa16.46■□□□□ 0.23
TRIM28-204ENST00000594806 EPM2AB3EWF7 344 aa16.45■□□□□ 0.22
TRIM28-204ENST00000594806 LOC107984640A0A0U1RRK4 108 aa16.44■□□□□ 0.22
TRIM28-204ENST00000594806 FAM229AH3BQW9 127 aa16.44■□□□□ 0.22
TRIM28-204ENST00000594806 SERF1AO75920 110 aa16.44■□□□□ 0.22
TRIM28-204ENST00000594806 SMR3BP02814 79 aaPredicted RBP16.44■□□□□ 0.22
TRIM28-204ENST00000594806 PRSS2P07478 247 aa16.44■□□□□ 0.22
TRIM28-204ENST00000594806 IGLC3P0DOY3 106 aa16.44■□□□□ 0.22
TRIM28-204ENST00000594806 Q8IZM0 81 aa16.44■□□□□ 0.22
TRIM28-204ENST00000594806 SPACA4Q8TDM5 124 aa16.44■□□□□ 0.22
TRIM28-204ENST00000594806 DPH3Q96FX2 82 aa16.44■□□□□ 0.22
TRIM28-204ENST00000594806 IFI27L1Q96BM0 104 aa16.43■□□□□ 0.22
TRIM28-204ENST00000594806 KRTAP17-1Q9BYP8 105 aa16.43■□□□□ 0.22
TRIM28-204ENST00000594806 H3BRM9 83 aa16.42■□□□□ 0.22
TRIM28-204ENST00000594806 PANO1I0J062 215 aa16.42■□□□□ 0.22
TRIM28-204ENST00000594806 C6orf226Q5I0X4 101 aa16.41■□□□□ 0.22
TRIM28-204ENST00000594806 FAM19A2Q8N3H0 131 aa16.41■□□□□ 0.22
TRIM28-204ENST00000594806 A0A096LNI7 61 aa16.4■□□□□ 0.22
TRIM28-204ENST00000594806 TRAV12-1A0A0B4J245 112 aa16.4■□□□□ 0.22
TRIM28-204ENST00000594806 TRBV30A0A0K0K1B3 111 aa16.4■□□□□ 0.22
TRIM28-204ENST00000594806 CHTF8P0CG12 524 aa16.4■□□□□ 0.22
TRIM28-204ENST00000594806 LINC00310P59036 64 aa16.4■□□□□ 0.22
TRIM28-204ENST00000594806 Q5VSD8 79 aa16.4■□□□□ 0.22
TRIM28-204ENST00000594806 UNQ6190/PRO20217Q6UXQ8 127 aa16.39■□□□□ 0.21
TRIM28-204ENST00000594806 TOMM7Q9P0U1 55 aa16.39■□□□□ 0.21
TRIM28-204ENST00000594806 A0A087WYN8 130 aa16.38■□□□□ 0.21
TRIM28-204ENST00000594806 IGKV2-24A0A0C4DH68 120 aa16.38■□□□□ 0.21
TRIM28-204ENST00000594806 SMIM1B2RUZ4 78 aa16.38■□□□□ 0.21
TRIM28-204ENST00000594806 CKS1BP61024 79 aa16.38■□□□□ 0.21
TRIM28-204ENST00000594806 MAJINQ3KP22 176 aa16.38■□□□□ 0.21
TRIM28-204ENST00000594806 HIST1H2BKO60814 126 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 ATP6V1G1O75348 118 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 LEPROTL1O95214 131 aa16.37■□□□□ 0.21
TRIM28-204ENST00000594806 HIST1H2BJP06899 126 aa16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 229.9 ms