RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 PYGO1Q9Y3Y4 419 aa15.17■□□□□ 0.02
SHMT1-206ENST00000579558 PLAC8Q9NZF1 115 aa15.15■□□□□ 0.02
SHMT1-206ENST00000579558 CYSLTR1Q9Y271 337 aa15.15■□□□□ 0.02
SHMT1-206ENST00000579558 IGLV4-3A0A075B6K6 122 aa15.14■□□□□ 0.01
SHMT1-206ENST00000579558 A0A096LNI7 61 aa15.14■□□□□ 0.01
SHMT1-206ENST00000579558 KIAA1644Q3SXP7 199 aa15.14■□□□□ 0.01
SHMT1-206ENST00000579558 ORMDL2Q53FV1 153 aa15.14■□□□□ 0.01
SHMT1-206ENST00000579558 C2orf66Q6UXQ4 117 aa15.14■□□□□ 0.01
SHMT1-206ENST00000579558 TMEM141Q96I45 108 aa15.14■□□□□ 0.01
SHMT1-206ENST00000579558 NXT2Q9NPJ8 142 aaKnown RBP15.14■□□□□ 0.01
SHMT1-206ENST00000579558 C10orf91Q5T1B1 145 aa15.13■□□□□ 0.01
SHMT1-206ENST00000579558 CAMK2N2Q96S95 79 aa15.13■□□□□ 0.01
SHMT1-206ENST00000579558 IGHV3OR16-9A0A0B4J2B5 98 aa15.12■□□□□ 0.01
SHMT1-206ENST00000579558 K7EMI3 77 aa15.12■□□□□ 0.01
SHMT1-206ENST00000579558 SPAG11BQ08648 103 aa15.12■□□□□ 0.01
SHMT1-206ENST00000579558 Q6ZRU5 148 aa15.12■□□□□ 0.01
SHMT1-206ENST00000579558 CARHSP1Q9Y2V2 147 aaKnown RBP15.12■□□□□ 0.01
SHMT1-206ENST00000579558 STPG4Q8N801 248 aa15.11■□□□□ 0.01
SHMT1-206ENST00000579558 C2orf48Q96LS8 159 aa15.11■□□□□ 0.01
SHMT1-206ENST00000579558 LINC00474Q9P2X8 69 aa15.11■□□□□ 0.01
SHMT1-206ENST00000579558 J3QL48 77 aa15.1■□□□□ 0.01
SHMT1-206ENST00000579558 RHEBQ15382 184 aa15.1■□□□□ 0.01
SHMT1-206ENST00000579558 TEX43Q6ZNM6 134 aa15.1■□□□□ 0.01
SHMT1-206ENST00000579558 OR10D4PQ8NGN7 298 aa15.1■□□□□ 0.01
SHMT1-206ENST00000579558 ORAOV1Q8WV07 137 aa15.1■□□□□ 0.01
SHMT1-206ENST00000579558 TGIF2-C20orf24A0A0A6YYL0 155 aa15.09■□□□□ 0.01
SHMT1-206ENST00000579558 GNB1LQ9BYB4 327 aa15.09■□□□□ 0.01
SHMT1-206ENST00000579558 RPS10P5Q9NQ39 176 aa15.09■□□□□ 0.01
SHMT1-206ENST00000579558 Q6ZN92 141 aa15.08■□□□□ 0
SHMT1-206ENST00000579558 C2orf88Q9BSF0 95 aa15.08■□□□□ 0
SHMT1-206ENST00000579558 LOC107984640A0A0U1RRK4 108 aa15.07■□□□□ 0
SHMT1-206ENST00000579558 KRTAP29-1A8MX34 341 aaPredicted RBP15.07■□□□□ 0
SHMT1-206ENST00000579558 LINC00242Q5T6M2 205 aa15.07■□□□□ 0
SHMT1-206ENST00000579558 C7orf33Q8WU49 177 aa15.07■□□□□ 0
SHMT1-206ENST00000579558 COX19Q49B96 90 aa15.06■□□□□ 0
SHMT1-206ENST00000579558 G0S2P27469 103 aa15.05■□□□□ -0
SHMT1-206ENST00000579558 UBE2D1P51668 147 aa15.05■□□□□ -0
SHMT1-206ENST00000579558 HNRNPA3P51991 378 aaKnown RBP15.05■□□□□ -0
SHMT1-206ENST00000579558 GAGE2BQ13066 116 aa15.05■□□□□ -0
SHMT1-206ENST00000579558 ZC2HC1BQ5TFG8 222 aa15.05■□□□□ -0
SHMT1-206ENST00000579558 VCX2Q9H322 139 aa15.05■□□□□ -0
SHMT1-206ENST00000579558 IGIPA6NJ69 53 aa15.04■□□□□ -0
SHMT1-206ENST00000579558 NPSP0C0P6 89 aa15.04■□□□□ -0
SHMT1-206ENST00000579558 PTTG1IPP53801 180 aa15.04■□□□□ -0
SHMT1-206ENST00000579558 LINC00173Q6ZV60 143 aa15.04■□□□□ -0
SHMT1-206ENST00000579558 AMELXQ99217 191 aa15.04■□□□□ -0
SHMT1-206ENST00000579558 A0A087WZ39 114 aa15.03■□□□□ -0
SHMT1-206ENST00000579558 ALKBH7Q9BT30 221 aaPredicted RBP15.03■□□□□ -0
SHMT1-206ENST00000579558 F8WDY8 70 aa15.02■□□□□ -0
SHMT1-206ENST00000579558 MT-ND6P03923 174 aa15.02■□□□□ -0
SHMT1-206ENST00000579558 MRPL18Q9H0U6 180 aaKnown RBP15.02■□□□□ -0
SHMT1-206ENST00000579558 PKHD1L1Q86WI1 4243 aa15.01□□□□□ -0.01
SHMT1-206ENST00000579558 A0A0J9YXV3 536 aa15.01□□□□□ -0.01
SHMT1-206ENST00000579558 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP15.01□□□□□ -0.01
SHMT1-206ENST00000579558 NDUFA1O15239 70 aa15.01□□□□□ -0.01
SHMT1-206ENST00000579558 FABP9Q0Z7S8 132 aa15.01□□□□□ -0.01
SHMT1-206ENST00000579558 RNF151Q2KHN1 245 aa15.01□□□□□ -0.01
SHMT1-206ENST00000579558 TOMM6Q96B49 74 aa15.01□□□□□ -0.01
SHMT1-206ENST00000579558 RPL18AQ02543 176 aaKnown RBP15□□□□□ -0.01
SHMT1-206ENST00000579558 PAPPA-AS1Q5QFB9 102 aa15□□□□□ -0.01
SHMT1-206ENST00000579558 MRPL35Q9NZE8 188 aaKnown RBP15□□□□□ -0.01
SHMT1-206ENST00000579558 APOC3P02656 99 aa14.99□□□□□ -0.01
SHMT1-206ENST00000579558 TIMM17AQ99595 171 aa14.99□□□□□ -0.01
SHMT1-206ENST00000579558 OXTP01178 125 aa14.98□□□□□ -0.01
SHMT1-206ENST00000579558 NDUFA5Q16718 116 aa14.97□□□□□ -0.01
SHMT1-206ENST00000579558 C10orf25Q5T742 122 aa14.97□□□□□ -0.01
SHMT1-206ENST00000579558 UNQ6190/PRO20217Q6UXQ8 127 aa14.97□□□□□ -0.01
SHMT1-206ENST00000579558 KIAA0087Q14695 138 aa14.96□□□□□ -0.01
SHMT1-206ENST00000579558 ERASQ7Z444 233 aa14.96□□□□□ -0.01
SHMT1-206ENST00000579558 LINC01561Q8N1V8 128 aa14.96□□□□□ -0.01
SHMT1-206ENST00000579558 SCGB3A1Q96QR1 104 aa14.96□□□□□ -0.01
SHMT1-206ENST00000579558 LRP1Q07954 4544 aaKnown RBP14.95□□□□□ -0.02
SHMT1-206ENST00000579558 LINC01546A6NGU7 62 aa14.95□□□□□ -0.02
SHMT1-206ENST00000579558 FA2HQ7L5A8 372 aa14.95□□□□□ -0.02
SHMT1-206ENST00000579558 FAM19A3Q7Z5A8 133 aa14.95□□□□□ -0.02
SHMT1-206ENST00000579558 SNAPINO95295 136 aa14.94□□□□□ -0.02
SHMT1-206ENST00000579558 SVBPQ8N300 66 aa14.94□□□□□ -0.02
SHMT1-206ENST00000579558 SMCO4Q9NRQ5 59 aa14.94□□□□□ -0.02
SHMT1-206ENST00000579558 C6orf48Q9UBA6 75 aa14.94□□□□□ -0.02
SHMT1-206ENST00000579558 SEC11AP67812 179 aa14.93□□□□□ -0.02
SHMT1-206ENST00000579558 PRR3P79522 188 aaKnown RBP14.93□□□□□ -0.02
SHMT1-206ENST00000579558 FAT3Q8TDW7 4589 aa14.92□□□□□ -0.02
SHMT1-206ENST00000579558 A0A1W2PNN7 141 aa14.92□□□□□ -0.02
SHMT1-206ENST00000579558 LINC01549A6NIU2 74 aa14.92□□□□□ -0.02
SHMT1-206ENST00000579558 HERVK_113P63121 156 aa14.92□□□□□ -0.02
SHMT1-206ENST00000579558 TRAPPC1Q9Y5R8 145 aa14.92□□□□□ -0.02
SHMT1-206ENST00000579558 C9orf116Q5BN46 136 aaPredicted RBP14.91□□□□□ -0.02
SHMT1-206ENST00000579558 GEMIN7Q9H840 131 aaKnown RBP14.91□□□□□ -0.02
SHMT1-206ENST00000579558 TLX1NBP0CAT3 122 aa14.9□□□□□ -0.02
SHMT1-206ENST00000579558 C2orf82Q6UX34 121 aa14.9□□□□□ -0.02
SHMT1-206ENST00000579558 PRSS2P07478 247 aa14.89□□□□□ -0.03
SHMT1-206ENST00000579558 TOMM7Q9P0U1 55 aa14.89□□□□□ -0.03
SHMT1-206ENST00000579558 CDKN2A-AS1Q9UH64 79 aa14.89□□□□□ -0.03
SHMT1-206ENST00000579558 TRBV30A0A0K0K1B3 111 aa14.88□□□□□ -0.03
SHMT1-206ENST00000579558 Q6ZRP5 223 aa14.88□□□□□ -0.03
SHMT1-206ENST00000579558 PACRGQ96M98 296 aaPredicted RBP14.88□□□□□ -0.03
SHMT1-206ENST00000579558 CKS1BP61024 79 aa14.85□□□□□ -0.03
SHMT1-206ENST00000579558 GAGE2EQ4V326 116 aa14.85□□□□□ -0.03
SHMT1-206ENST00000579558 C6orf226Q5I0X4 101 aa14.85□□□□□ -0.03
SHMT1-206ENST00000579558 Q8IZM0 81 aa14.85□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms