RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 IGLV4-69A0A075B6H9 119 aa13□□□□□ -0.33
VPS53-216ENST00000574029 LOC107984640A0A0U1RRK4 108 aa13□□□□□ -0.33
VPS53-216ENST00000574029 TCAPO15273 167 aa13□□□□□ -0.33
VPS53-216ENST00000574029 NPYP01303 97 aa13□□□□□ -0.33
VPS53-216ENST00000574029 PRSS47A8MTI9 375 aa12.99□□□□□ -0.33
VPS53-216ENST00000574029 FCER1GP30273 86 aa12.99□□□□□ -0.33
VPS53-216ENST00000574029 GAGE2BQ13066 116 aa12.99□□□□□ -0.33
VPS53-216ENST00000574029 PRELID3AQ96N28 172 aa12.99□□□□□ -0.33
VPS53-216ENST00000574029 SMIM2Q9BVW6 85 aa12.99□□□□□ -0.33
VPS53-216ENST00000574029 LAMTOR2Q9Y2Q5 125 aa12.99□□□□□ -0.33
VPS53-216ENST00000574029 C1orf196B1AJZ1 125 aa12.98□□□□□ -0.33
VPS53-216ENST00000574029 S100PP25815 95 aa12.98□□□□□ -0.33
VPS53-216ENST00000574029 CSDC2Q9Y534 153 aaKnown RBP12.98□□□□□ -0.33
VPS53-216ENST00000574029 A0A1W2PNN7 141 aa12.97□□□□□ -0.33
VPS53-216ENST00000574029 COX7A2LO14548 114 aa12.97□□□□□ -0.33
VPS53-216ENST00000574029 MALP21145 153 aa12.97□□□□□ -0.33
VPS53-216ENST00000574029 RPS10P5Q9NQ39 176 aa12.97□□□□□ -0.33
VPS53-216ENST00000574029 UBE2D4Q9Y2X8 147 aa12.96□□□□□ -0.33
VPS53-216ENST00000574029 APOC3P02656 99 aa12.95□□□□□ -0.34
VPS53-216ENST00000574029 CAMK2N2Q96S95 79 aa12.95□□□□□ -0.34
VPS53-216ENST00000574029 APOMO95445 188 aa12.94□□□□□ -0.34
VPS53-216ENST00000574029 SMAGPQ0VAQ4 97 aa12.94□□□□□ -0.34
VPS53-216ENST00000574029 NDUFA5Q16718 116 aa12.94□□□□□ -0.34
VPS53-216ENST00000574029 SVBPQ8N300 66 aa12.94□□□□□ -0.34
VPS53-216ENST00000574029 C2orf48Q96LS8 159 aa12.94□□□□□ -0.34
VPS53-216ENST00000574029 GNB1LQ9BYB4 327 aa12.94□□□□□ -0.34
VPS53-216ENST00000574029 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.93□□□□□ -0.34
VPS53-216ENST00000574029 SNAPINO95295 136 aa12.93□□□□□ -0.34
VPS53-216ENST00000574029 COX19Q49B96 90 aa12.93□□□□□ -0.34
VPS53-216ENST00000574029 TMEM18Q96B42 140 aa12.93□□□□□ -0.34
VPS53-216ENST00000574029 TIMM21Q9BVV7 248 aa12.93□□□□□ -0.34
VPS53-216ENST00000574029 PSORS1C2Q9UIG4 136 aa12.93□□□□□ -0.34
VPS53-216ENST00000574029 C9orf116Q5BN46 136 aaPredicted RBP12.92□□□□□ -0.34
VPS53-216ENST00000574029 RNASE13Q5GAN3 156 aaKnown RBP12.92□□□□□ -0.34
VPS53-216ENST00000574029 TRAV13-1A0A0B4J241 112 aa12.91□□□□□ -0.34
VPS53-216ENST00000574029 MAP1LC3AQ9H492 121 aa12.91□□□□□ -0.34
VPS53-216ENST00000574029 C5orf38Q86SI9 138 aa12.9□□□□□ -0.34
VPS53-216ENST00000574029 MT-ND6P03923 174 aa12.89□□□□□ -0.35
VPS53-216ENST00000574029 RAB5AP20339 215 aa12.89□□□□□ -0.35
VPS53-216ENST00000574029 RPL18AQ02543 176 aaKnown RBP12.89□□□□□ -0.35
VPS53-216ENST00000574029 RNF151Q2KHN1 245 aa12.89□□□□□ -0.35
VPS53-216ENST00000574029 Q6ZUT4 128 aa12.89□□□□□ -0.35
VPS53-216ENST00000574029 Q8N8P6 123 aa12.89□□□□□ -0.35
VPS53-216ENST00000574029 PHF5AQ7RTV0 110 aaKnown RBP12.88□□□□□ -0.35
VPS53-216ENST00000574029 LOC389332A0A1B0GUA5 103 aa12.87□□□□□ -0.35
VPS53-216ENST00000574029 K7EMI3 77 aa12.87□□□□□ -0.35
VPS53-216ENST00000574029 SPAG11BQ08648 103 aa12.87□□□□□ -0.35
VPS53-216ENST00000574029 KIAA1644Q3SXP7 199 aa12.87□□□□□ -0.35
VPS53-216ENST00000574029 OPRPNQ99935 248 aaPredicted RBP12.87□□□□□ -0.35
VPS53-216ENST00000574029 RPL39P62891 51 aaKnown RBP12.86□□□□□ -0.35
VPS53-216ENST00000574029 C1orf137Q5JT78 98 aa12.86□□□□□ -0.35
VPS53-216ENST00000574029 OR10D4PQ8NGN7 298 aa12.86□□□□□ -0.35
VPS53-216ENST00000574029 SPANXA1Q9NS26 97 aa12.86□□□□□ -0.35
VPS53-216ENST00000574029 NXT2Q9NPJ8 142 aaKnown RBP12.85□□□□□ -0.35
VPS53-216ENST00000574029 SLC7A5P1Q8MH63 180 aa12.84□□□□□ -0.35
VPS53-216ENST00000574029 FAM104AQ969W3 186 aa12.84□□□□□ -0.35
VPS53-216ENST00000574029 ALKBH7Q9BT30 221 aaPredicted RBP12.84□□□□□ -0.35
VPS53-216ENST00000574029 MRPL35Q9NZE8 188 aaKnown RBP12.84□□□□□ -0.35
VPS53-216ENST00000574029 PYGO1Q9Y3Y4 419 aa12.84□□□□□ -0.35
VPS53-216ENST00000574029 TGIF2-C20orf24A0A0A6YYL0 155 aa12.83□□□□□ -0.36
VPS53-216ENST00000574029 F8WDY8 70 aa12.83□□□□□ -0.36
VPS53-216ENST00000574029 MRPS36P82909 103 aaKnown RBP12.83□□□□□ -0.36
VPS53-216ENST00000574029 MRPL18Q9H0U6 180 aaKnown RBP12.83□□□□□ -0.36
VPS53-216ENST00000574029 IFI27P40305 119 aaPredicted RBP12.82□□□□□ -0.36
VPS53-216ENST00000574029 ORMDL2Q53FV1 153 aa12.82□□□□□ -0.36
VPS53-216ENST00000574029 IGHV3OR16-9A0A0B4J2B5 98 aa12.81□□□□□ -0.36
VPS53-216ENST00000574029 IGLV7-43P04211 117 aa12.81□□□□□ -0.36
VPS53-216ENST00000574029 FABP9Q0Z7S8 132 aa12.81□□□□□ -0.36
VPS53-216ENST00000574029 ORAOV1Q8WV07 137 aa12.81□□□□□ -0.36
VPS53-216ENST00000574029 DIRC1Q969H9 104 aa12.8□□□□□ -0.36
VPS53-216ENST00000574029 YPEL4Q96NS1 127 aa12.8□□□□□ -0.36
VPS53-216ENST00000574029 TLX1NBP0CAT3 122 aa12.79□□□□□ -0.36
VPS53-216ENST00000574029 LINC01546A6NGU7 62 aa12.78□□□□□ -0.36
VPS53-216ENST00000574029 NDUFA1O15239 70 aa12.78□□□□□ -0.36
VPS53-216ENST00000574029 G0S2P27469 103 aa12.78□□□□□ -0.36
VPS53-216ENST00000574029 C10orf25Q5T742 122 aa12.78□□□□□ -0.36
VPS53-216ENST00000574029 C2orf66Q6UXQ4 117 aa12.78□□□□□ -0.36
VPS53-216ENST00000574029 KRTAP11-1Q8IUC1 163 aa12.78□□□□□ -0.36
VPS53-216ENST00000574029 PRR26Q8N8Z3 221 aa12.78□□□□□ -0.36
VPS53-216ENST00000574029 CYSLTR1Q9Y271 337 aa12.78□□□□□ -0.36
VPS53-216ENST00000574029 FAM168BA1KXE4 195 aa12.77□□□□□ -0.37
VPS53-216ENST00000574029 TRAPPC1Q9Y5R8 145 aa12.77□□□□□ -0.37
VPS53-216ENST00000574029 LPAP08519 4548 aa12.77□□□□□ -0.37
VPS53-216ENST00000574029 A0A087WZ39 114 aa12.76□□□□□ -0.37
VPS53-216ENST00000574029 H0Y9J4 135 aa12.76□□□□□ -0.37
VPS53-216ENST00000574029 NPSP0C0P6 89 aa12.76□□□□□ -0.37
VPS53-216ENST00000574029 IGLV4-3A0A075B6K6 122 aa12.75□□□□□ -0.37
VPS53-216ENST00000574029 UNQ6190/PRO20217Q6UXQ8 127 aa12.75□□□□□ -0.37
VPS53-216ENST00000574029 SMCO4Q9NRQ5 59 aa12.75□□□□□ -0.37
VPS53-216ENST00000574029 C6orf48Q9UBA6 75 aa12.75□□□□□ -0.37
VPS53-216ENST00000574029 IGIPA6NJ69 53 aa12.74□□□□□ -0.37
VPS53-216ENST00000574029 TMEM141Q96I45 108 aa12.74□□□□□ -0.37
VPS53-216ENST00000574029 IFITM10A6NMD0 228 aa12.73□□□□□ -0.37
VPS53-216ENST00000574029 FAM19A5Q7Z5A7 132 aaPredicted RBP12.73□□□□□ -0.37
VPS53-216ENST00000574029 KRTAP7-1Q8IUC3 87 aa12.73□□□□□ -0.37
VPS53-216ENST00000574029 TOMM6Q96B49 74 aa12.73□□□□□ -0.37
VPS53-216ENST00000574029 LINC01549A6NIU2 74 aa12.71□□□□□ -0.37
VPS53-216ENST00000574029 KIAA0087Q14695 138 aa12.71□□□□□ -0.37
VPS53-216ENST00000574029 GAGE2EQ4V326 116 aa12.71□□□□□ -0.37
VPS53-216ENST00000574029 AMELXQ99217 191 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms