RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 Q6ZUT4 128 aa9.97□□□□□ -0.81
CLN3-229ENST00000567963 C5orf38Q86SI9 138 aa9.97□□□□□ -0.81
CLN3-229ENST00000567963 CAMK2N2Q96S95 79 aa9.97□□□□□ -0.81
CLN3-229ENST00000567963 A0A0J9YXV3 536 aa9.96□□□□□ -0.82
CLN3-229ENST00000567963 CKS2P33552 79 aa9.96□□□□□ -0.82
CLN3-229ENST00000567963 C2orf48Q96LS8 159 aa9.96□□□□□ -0.82
CLN3-229ENST00000567963 A0A1B0GW15 77 aa9.95□□□□□ -0.82
CLN3-229ENST00000567963 A0A1W2PNN7 141 aa9.95□□□□□ -0.82
CLN3-229ENST00000567963 APOMO95445 188 aa9.95□□□□□ -0.82
CLN3-229ENST00000567963 RPL32P62910 135 aaKnown RBP9.95□□□□□ -0.82
CLN3-229ENST00000567963 REG3GQ6UW15 175 aa9.95□□□□□ -0.82
CLN3-229ENST00000567963 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.94□□□□□ -0.82
CLN3-229ENST00000567963 TCAPO15273 167 aa9.94□□□□□ -0.82
CLN3-229ENST00000567963 TNFRSF6BO95407 300 aa9.94□□□□□ -0.82
CLN3-229ENST00000567963 KRTAP10-8P60410 259 aa9.94□□□□□ -0.82
CLN3-229ENST00000567963 RPL39P62891 51 aaKnown RBP9.94□□□□□ -0.82
CLN3-229ENST00000567963 ODF1Q14990 250 aa9.94□□□□□ -0.82
CLN3-229ENST00000567963 LRP2P98164 4655 aa9.93□□□□□ -0.82
CLN3-229ENST00000567963 FAM104AQ969W3 186 aa9.93□□□□□ -0.82
CLN3-229ENST00000567963 IMMP2LQ96T52 175 aa9.93□□□□□ -0.82
CLN3-229ENST00000567963 RPS10P5Q9NQ39 176 aa9.93□□□□□ -0.82
CLN3-229ENST00000567963 D6R8Y8 96 aa9.91□□□□□ -0.82
CLN3-229ENST00000567963 RPL18AQ02543 176 aaKnown RBP9.91□□□□□ -0.82
CLN3-229ENST00000567963 SPAG11BQ08648 103 aa9.91□□□□□ -0.82
CLN3-229ENST00000567963 RNF151Q2KHN1 245 aa9.91□□□□□ -0.82
CLN3-229ENST00000567963 C9orf116Q5BN46 136 aaPredicted RBP9.91□□□□□ -0.82
CLN3-229ENST00000567963 OR10D4PQ8NGN7 298 aa9.91□□□□□ -0.82
CLN3-229ENST00000567963 OPRPNQ99935 248 aaPredicted RBP9.91□□□□□ -0.82
CLN3-229ENST00000567963 SMIM2Q9BVW6 85 aa9.91□□□□□ -0.82
CLN3-229ENST00000567963 IGHV3OR16-9A0A0B4J2B5 98 aa9.91□□□□□ -0.82
CLN3-229ENST00000567963 HBBP68871 147 aa9.91□□□□□ -0.82
CLN3-229ENST00000567963 MRPL54Q6P161 138 aaKnown RBP9.91□□□□□ -0.82
CLN3-229ENST00000567963 SPANXA1Q9NS26 97 aa9.91□□□□□ -0.82
CLN3-229ENST00000567963 A0A1B0GXF2 115 aa9.9□□□□□ -0.83
CLN3-229ENST00000567963 NPYP01303 97 aa9.9□□□□□ -0.83
CLN3-229ENST00000567963 S100A8P05109 93 aa9.9□□□□□ -0.83
CLN3-229ENST00000567963 MRPS36P82909 103 aaKnown RBP9.9□□□□□ -0.83
CLN3-229ENST00000567963 TRAV9-1A0A075B6T8 112 aa9.89□□□□□ -0.83
CLN3-229ENST00000567963 MRPL35Q9NZE8 188 aaKnown RBP9.89□□□□□ -0.83
CLN3-229ENST00000567963 PSORS1C2Q9UIG4 136 aa9.89□□□□□ -0.83
CLN3-229ENST00000567963 F8WDY8 70 aa9.88□□□□□ -0.83
CLN3-229ENST00000567963 PPBPP02775 128 aa9.88□□□□□ -0.83
CLN3-229ENST00000567963 ORAOV1Q8WV07 137 aa9.88□□□□□ -0.83
CLN3-229ENST00000567963 PHF5AQ7RTV0 110 aaKnown RBP9.87□□□□□ -0.83
CLN3-229ENST00000567963 YPEL4Q96NS1 127 aa9.87□□□□□ -0.83
CLN3-229ENST00000567963 MT-ND6P03923 174 aa9.86□□□□□ -0.83
CLN3-229ENST00000567963 ATP5L2Q7Z4Y8 100 aa9.86□□□□□ -0.83
CLN3-229ENST00000567963 IFITM10A6NMD0 228 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 NDUFA1O15239 70 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 S100PP25815 95 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 CBLN2Q8IUK8 224 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 ORMDL3Q8N138 153 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 SMCO4Q9NRQ5 59 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 RAB5AP20339 215 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 C1orf137Q5JT78 98 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 C10orf25Q5T742 122 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 TMEM136Q6ZRR5 245 aa9.85□□□□□ -0.83
CLN3-229ENST00000567963 RNF213Q63HN8 5207 aa9.84□□□□□ -0.83
CLN3-229ENST00000567963 TLX1NBP0CAT3 122 aa9.84□□□□□ -0.83
CLN3-229ENST00000567963 IFI27P40305 119 aaPredicted RBP9.84□□□□□ -0.83
CLN3-229ENST00000567963 UNQ6190/PRO20217Q6UXQ8 127 aa9.84□□□□□ -0.83
CLN3-229ENST00000567963 PYGO1Q9Y3Y4 419 aa9.84□□□□□ -0.83
CLN3-229ENST00000567963 SCO1O75880 301 aa9.83□□□□□ -0.84
CLN3-229ENST00000567963 PRELID3AQ96N28 172 aa9.83□□□□□ -0.84
CLN3-229ENST00000567963 C6orf48Q9UBA6 75 aa9.83□□□□□ -0.84
CLN3-229ENST00000567963 A0A087WZ39 114 aa9.82□□□□□ -0.84
CLN3-229ENST00000567963 TGIF2-C20orf24A0A0A6YYL0 155 aa9.82□□□□□ -0.84
CLN3-229ENST00000567963 FAM168BA1KXE4 195 aa9.82□□□□□ -0.84
CLN3-229ENST00000567963 PRSS47A8MTI9 375 aa9.82□□□□□ -0.84
CLN3-229ENST00000567963 IGLV4-3A0A075B6K6 122 aa9.81□□□□□ -0.84
CLN3-229ENST00000567963 KIAA0087Q14695 138 aa9.81□□□□□ -0.84
CLN3-229ENST00000567963 LINC00242Q5T6M2 205 aa9.81□□□□□ -0.84
CLN3-229ENST00000567963 IGLV7-43P04211 117 aa9.79□□□□□ -0.84
CLN3-229ENST00000567963 GAGE2EQ4V326 116 aa9.79□□□□□ -0.84
CLN3-229ENST00000567963 KRTAP11-1Q8IUC1 163 aa9.79□□□□□ -0.84
CLN3-229ENST00000567963 TMEM141Q96I45 108 aa9.79□□□□□ -0.84
CLN3-229ENST00000567963 GAGE2DQ9UEU5 116 aa9.79□□□□□ -0.84
CLN3-229ENST00000567963 LOC389332A0A1B0GUA5 103 aa9.79□□□□□ -0.84
CLN3-229ENST00000567963 LAMTOR2Q9Y2Q5 125 aa9.79□□□□□ -0.84
CLN3-229ENST00000567963 COX19Q49B96 90 aa9.78□□□□□ -0.84
CLN3-229ENST00000567963 TEX43Q6ZNM6 134 aa9.78□□□□□ -0.84
CLN3-229ENST00000567963 FAM19A5Q7Z5A7 132 aaPredicted RBP9.78□□□□□ -0.84
CLN3-229ENST00000567963 KRTAP7-1Q8IUC3 87 aa9.78□□□□□ -0.84
CLN3-229ENST00000567963 TRBV30A0A0K0K1B3 111 aa9.77□□□□□ -0.85
CLN3-229ENST00000567963 COLCA2A8K830 154 aa9.77□□□□□ -0.85
CLN3-229ENST00000567963 UBE2D1P51668 147 aa9.77□□□□□ -0.85
CLN3-229ENST00000567963 C2orf82Q6UX34 121 aa9.77□□□□□ -0.85
CLN3-229ENST00000567963 DIRC1Q969H9 104 aa9.77□□□□□ -0.85
CLN3-229ENST00000567963 GNB1LQ9BYB4 327 aa9.77□□□□□ -0.85
CLN3-229ENST00000567963 MAP1LC3AQ9H492 121 aa9.77□□□□□ -0.85
CLN3-229ENST00000567963 C2orf66Q6UXQ4 117 aa9.75□□□□□ -0.85
CLN3-229ENST00000567963 LINC01561Q8N1V8 128 aa9.75□□□□□ -0.85
CLN3-229ENST00000567963 Q8N8P6 123 aa9.75□□□□□ -0.85
CLN3-229ENST00000567963 C2orf88Q9BSF0 95 aa9.75□□□□□ -0.85
CLN3-229ENST00000567963 CYSLTR1Q9Y271 337 aa9.75□□□□□ -0.85
CLN3-229ENST00000567963 NDUFC2-KCTD14E9PQ53 114 aa9.74□□□□□ -0.85
CLN3-229ENST00000567963 H0Y9J4 135 aa9.74□□□□□ -0.85
CLN3-229ENST00000567963 ZC2HC1BQ5TFG8 222 aa9.74□□□□□ -0.85
CLN3-229ENST00000567963 LINC00173Q6ZV60 143 aa9.74□□□□□ -0.85
CLN3-229ENST00000567963 PRR26Q8N8Z3 221 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 135.8 ms