RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 ODF3L2Q3SX64 289 aa9.45□□□□□ -0.9
CLN3-210ENST00000563874 C1orf158Q8N1D5 194 aa9.44□□□□□ -0.9
CLN3-210ENST00000563874 IGHV4-31P0DP07 118 aa9.44□□□□□ -0.9
CLN3-210ENST00000563874 BBC3Q96PG8 261 aaPredicted RBP9.44□□□□□ -0.9
CLN3-210ENST00000563874 SETXQ7Z333 2677 aaKnown RBP9.44□□□□□ -0.9
CLN3-210ENST00000563874 STHQ8IWL8 128 aa9.43□□□□□ -0.9
CLN3-210ENST00000563874 LRRC75A-AS1Q8N1F1 130 aa9.43□□□□□ -0.9
CLN3-210ENST00000563874 C4orf3Q8WVX3 66 aa9.43□□□□□ -0.9
CLN3-210ENST00000563874 COX7A2LO14548 114 aa9.42□□□□□ -0.9
CLN3-210ENST00000563874 FSHBP01225 129 aa9.42□□□□□ -0.9
CLN3-210ENST00000563874 RPL36AP83881 106 aaKnown RBP9.42□□□□□ -0.9
CLN3-210ENST00000563874 Q6Q795 121 aa9.42□□□□□ -0.9
CLN3-210ENST00000563874 RPL36ALQ969Q0 106 aaKnown RBP9.42□□□□□ -0.9
CLN3-210ENST00000563874 IGKV3OR2-268A0A0C4DH90 116 aa9.42□□□□□ -0.9
CLN3-210ENST00000563874 C1orf43Q9BWL3 253 aa9.42□□□□□ -0.9
CLN3-210ENST00000563874 Q96MF0 132 aa9.41□□□□□ -0.9
CLN3-210ENST00000563874 CHCHD5Q9BSY4 110 aa9.41□□□□□ -0.9
CLN3-210ENST00000563874 K7EQD1 137 aa9.41□□□□□ -0.9
CLN3-210ENST00000563874 KRTAP10-9P60411 292 aa9.41□□□□□ -0.9
CLN3-210ENST00000563874 NBPF19A0A087WUL8 3843 aa9.41□□□□□ -0.9
CLN3-210ENST00000563874 DEFB121Q5J5C9 76 aa9.4□□□□□ -0.9
CLN3-210ENST00000563874 NOP10Q9NPE3 64 aaKnown RBP9.4□□□□□ -0.9
CLN3-210ENST00000563874 CDC42SE2Q9NRR3 84 aa9.4□□□□□ -0.9
CLN3-210ENST00000563874 GCN1Q92616 2671 aaKnown RBP9.4□□□□□ -0.9
CLN3-210ENST00000563874 FAM218AQ96MZ4 157 aa9.4□□□□□ -0.9
CLN3-210ENST00000563874 LOC100131303A0A0U1RQF7 123 aa9.4□□□□□ -0.91
CLN3-210ENST00000563874 FAM240AA0A1B0GVK7 77 aa9.4□□□□□ -0.91
CLN3-210ENST00000563874 DAZ2Q13117 558 aaKnown RBP9.4□□□□□ -0.91
CLN3-210ENST00000563874 DAZ4Q86SG3 579 aaKnown RBP9.4□□□□□ -0.91
CLN3-210ENST00000563874 DAZ3Q9NR90 486 aaKnown RBP9.4□□□□□ -0.91
CLN3-210ENST00000563874 J3KT08 172 aa9.39□□□□□ -0.91
CLN3-210ENST00000563874 TOMM7Q9P0U1 55 aa9.39□□□□□ -0.91
CLN3-210ENST00000563874 PRB1P04280 392 aa9.39□□□□□ -0.91
CLN3-210ENST00000563874 Q9HAA7 133 aa9.38□□□□□ -0.91
CLN3-210ENST00000563874 CR1P17927 2039 aa9.38□□□□□ -0.91
CLN3-210ENST00000563874 UBE2L6O14933 153 aa9.38□□□□□ -0.91
CLN3-210ENST00000563874 BAALC-AS2P0C853 105 aa9.38□□□□□ -0.91
CLN3-210ENST00000563874 PLA2G2AP14555 144 aa9.37□□□□□ -0.91
CLN3-210ENST00000563874 SMCR5Q8TEV8 140 aa9.37□□□□□ -0.91
CLN3-210ENST00000563874 PKIGQ9Y2B9 76 aa9.37□□□□□ -0.91
CLN3-210ENST00000563874 FN1P02751 2386 aaKnown RBP9.37□□□□□ -0.91
CLN3-210ENST00000563874 WFDC10AQ9H1F0 79 aa9.37□□□□□ -0.91
CLN3-210ENST00000563874 MTORP42345 2549 aa9.37□□□□□ -0.91
CLN3-210ENST00000563874 IL17DQ8TAD2 202 aa9.37□□□□□ -0.91
CLN3-210ENST00000563874 ITPR3Q14573 2671 aa9.36□□□□□ -0.91
CLN3-210ENST00000563874 TRBV10-1A0A0K0K1A3 114 aa9.36□□□□□ -0.91
CLN3-210ENST00000563874 HRCT1Q6UXD1 115 aa9.36□□□□□ -0.91
CLN3-210ENST00000563874 TRGV2A0A075B6R0 118 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 MIR7-3HGQ8N6C7 128 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 TMEM243Q9BU79 118 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 V9GYY9 64 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 FAM236AA0A1B0GUQ0 79 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 FAM236BA0A1B0GV22 79 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 FAM19A3Q7Z5A8 133 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 COPS9Q8WXC6 57 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 RPL35AP18077 110 aaKnown RBP9.35□□□□□ -0.91
CLN3-210ENST00000563874 ZNF843Q8N446 348 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 C22orf24Q9Y442 160 aa9.35□□□□□ -0.91
CLN3-210ENST00000563874 HELZ2Q9BYK8 2649 aaKnown RBP9.34□□□□□ -0.91
CLN3-210ENST00000563874 LINC00337Q8N6G1 96 aa9.34□□□□□ -0.91
CLN3-210ENST00000563874 TRBV7-7A0A0K0K1E9 115 aa9.34□□□□□ -0.91
CLN3-210ENST00000563874 FLNAP21333 2647 aaKnown RBP9.33□□□□□ -0.92
CLN3-210ENST00000563874 J3QKU1 62 aa9.33□□□□□ -0.92
CLN3-210ENST00000563874 ACANP16112 2415 aa9.33□□□□□ -0.92
CLN3-210ENST00000563874 TRACP01848 142 aa9.33□□□□□ -0.92
CLN3-210ENST00000563874 C4orf26Q17RF5 130 aa9.33□□□□□ -0.92
CLN3-210ENST00000563874 APCP25054 2843 aa9.33□□□□□ -0.92
CLN3-210ENST00000563874 CRPP02741 224 aa9.33□□□□□ -0.92
CLN3-210ENST00000563874 LINC00158P58513 81 aa9.33□□□□□ -0.92
CLN3-210ENST00000563874 HIST2H2BCQ6DN03 193 aa9.33□□□□□ -0.92
CLN3-210ENST00000563874 COX7B2Q8TF08 81 aa9.33□□□□□ -0.92
CLN3-210ENST00000563874 IGLV4-60A0A075B6I1 120 aa9.32□□□□□ -0.92
CLN3-210ENST00000563874 IGKV2-28A0A075B6P5 120 aa9.32□□□□□ -0.92
CLN3-210ENST00000563874 CCL24O00175 119 aa9.32□□□□□ -0.92
CLN3-210ENST00000563874 IGKV2D-28P01615 120 aa9.32□□□□□ -0.92
CLN3-210ENST00000563874 GAGE2AQ6NT46 116 aa9.32□□□□□ -0.92
CLN3-210ENST00000563874 SND1-IT1Q9HBX3 110 aa9.32□□□□□ -0.92
CLN3-210ENST00000563874 GIG44P09565 113 aaPredicted RBP9.31□□□□□ -0.92
CLN3-210ENST00000563874 ACYP1P07311 99 aa9.31□□□□□ -0.92
CLN3-210ENST00000563874 PFN2P35080 140 aa9.31□□□□□ -0.92
CLN3-210ENST00000563874 NBEAL2Q6ZNJ1 2754 aa9.3□□□□□ -0.92
CLN3-210ENST00000563874 C11orf68Q9H3H3 251 aaKnown RBP9.3□□□□□ -0.92
CLN3-210ENST00000563874 A0A087WYN8 130 aa9.3□□□□□ -0.92
CLN3-210ENST00000563874 TRGV4A0A0C4DH28 118 aa9.3□□□□□ -0.92
CLN3-210ENST00000563874 C5orf38Q86SI9 138 aa9.3□□□□□ -0.92
CLN3-210ENST00000563874 FLNBO75369 2602 aaKnown RBP9.3□□□□□ -0.92
CLN3-210ENST00000563874 TRAV13-2A0A0B4J235 113 aa9.3□□□□□ -0.92
CLN3-210ENST00000563874 PLAC8L1A1L4L8 177 aa9.3□□□□□ -0.92
CLN3-210ENST00000563874 C9orf129Q5T035 196 aaKnown RBP9.3□□□□□ -0.92
CLN3-210ENST00000563874 ATP5G1P05496 136 aa9.29□□□□□ -0.92
CLN3-210ENST00000563874 SMIM11BQ8TCY0 68 aa9.29□□□□□ -0.92
CLN3-210ENST00000563874 MALP21145 153 aa9.29□□□□□ -0.92
CLN3-210ENST00000563874 DEFB113Q30KQ7 82 aa9.29□□□□□ -0.92
CLN3-210ENST00000563874 UBR5O95071 2799 aaPredicted RBP9.29□□□□□ -0.92
CLN3-210ENST00000563874 RPL28P46779 137 aaKnown RBP9.28□□□□□ -0.92
CLN3-210ENST00000563874 LINC00643Q86TS7 51 aa9.28□□□□□ -0.92
CLN3-210ENST00000563874 DNAJC9-AS1A6NH13 148 aa9.28□□□□□ -0.92
CLN3-210ENST00000563874 CCL18P55774 89 aa9.28□□□□□ -0.92
CLN3-210ENST00000563874 KLK5Q9Y337 293 aaPredicted RBP9.28□□□□□ -0.92
CLN3-210ENST00000563874 DNAL4O96015 105 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms